Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG4G4790 Aethionema arabicum HOM05D005938 ORTHO05D007654 3.2e-165 585.1 310 100.0
BcaC08g46988 Brassica carinata HOM05D005938 ORTHO05D007654 7.9e-116 421.0 263 82.1
C06p48680 Brassica napus HOM05D005938 ORTHO05D007654 1.0e-115 420.6 325 69.8
Thhalv10018904m.g Eutrema salsugineum HOM05D005938 ORTHO05D007654 2.3e-115 419.5 258 82.6
Sp5g29710 Schrenkiella parvula HOM05D005938 ORTHO05D007654 1.3e-113 413.7 261 81.2
CARHR067810 Cardamine hirsuta HOM05D005938 ORTHO05D007654 2.1e-113 412.9 256 82.4
AL2G34410 Arabidopsis lyrata HOM05D005938 ORTHO05D007654 2.8e-113 412.5 258 80.2
BcaC08g46886 Brassica carinata HOM05D005938 ORTHO05D007654 6.9e-112 407.9 268 78.4
A07p40340 Brassica napus HOM05D005938 ORTHO05D007654 1.2e-111 407.1 258 81.4
Carub.0002s2133 Capsella rubella HOM05D005938 ORTHO05D007654 1.2e-111 407.1 258 80.2
BolC6t39901H Brassica oleracea HOM05D005938 ORTHO05D007654 2.2e-110 402.9 332 67.8
BraA07t31575Z Brassica rapa HOM05D005938 ORTHO05D007654 2.3e-107 392.9 281 74.7
AT1G74530 Arabidopsis thaliana HOM05D005938 ORTHO05D007654 9.7e-106 387.5 261 77.8
THA.LOC104812546 Tarenaya hassleriana HOM05D005938 ORTHO05D007654 5.5e-101 371.7 253 75.1
BcaC08g46884 Brassica carinata HOM05D005938 ORTHO05D007654 1.2e-100 370.5 281 70.8
Aa31LG7G3570 Aethionema arabicum HOM05D005938 ORTHO05D007654 8.2e-97 357.8 244 75.4
Dinv38693 Davidia involucrata HOM05D005938 ORTHO05D007654 3.2e-85 319.3 249 64.7
Actinidia34992 Actinidia chinensis HOM05D005938 ORTHO05D007654 2.7e-84 316.2 241 67.2
Sc10g0009920 Simmondsia chinensis HOM05D005938 ORTHO05D007654 2.7e-84 316.2 243 65.8
CiPaw.11G042800 Carya illinoinensis HOM05D005938 ORTHO05D007654 3.6e-84 315.8 251 63.3
QL10p016543 Quercus lobata HOM05D005938 ORTHO05D007654 3.6e-84 315.8 254 63.0
CANSAT80G1410 Cannabis sativa HOM05D005938 ORTHO05D007654 4.7e-84 315.5 236 67.4
Atru.chr9.2268 Acer truncatum HOM05D005938 ORTHO05D007654 8.0e-84 314.7 252 64.3
Sed0010411 Sechium edule HOM05D005938 ORTHO05D007654 1.4e-83 313.9 243 65.8
CsaV3_1G002270 Cucumis sativus L. HOM05D005938 ORTHO05D007654 2.3e-83 313.2 234 67.1
Glyma.06G192800 Glycine max HOM05D005938 ORTHO05D007654 2.3e-83 313.2 246 63.8
Lj1g0012745 Lotus japonicus HOM05D005938 ORTHO05D007654 2.3e-83 313.2 248 62.9
CSS0017360 Camellia sinensis var. sinensis HOM05D005938 ORTHO05D007654 3.9e-83 312.4 238 66.8
CSS0040883 Camellia sinensis var. sinensis HOM05D005938 ORTHO05D007654 3.9e-83 312.4 238 66.8
Prupe.5G190900 Prunus persica HOM05D005938 ORTHO05D007654 8.8e-83 311.2 237 65.4
Ciclev10021191m.g Citrus clementina HOM05D005938 ORTHO05D007654 1.1e-82 310.8 291 57.7
Gorai.008G192300 Gossypium raimondii HOM05D005938 ORTHO05D007654 1.5e-82 310.5 245 65.3
Phvul.009G188150 Phaseolus vulgaris HOM05D005938 ORTHO05D007654 3.3e-82 309.3 246 62.2
MELO3C017167.2 Cucumis melo HOM05D005938 ORTHO05D007654 5.7e-82 308.5 234 66.7
Lalb_Chr08g0235801 Lupinus albus HOM05D005938 ORTHO05D007654 1.3e-81 307.4 241 64.3
Gohir.D12G179280 Gossypium hirsutum HOM05D005938 ORTHO05D007654 2.8e-81 306.2 245 65.3
Cc04_g16920 Coffea canephora HOM05D005938 ORTHO05D007654 3.7e-81 305.8 236 64.0
MD14G1198100 Malus domestica HOM05D005938 ORTHO05D007654 4.8e-81 305.4 238 63.9
GSVIVG01008024001 Vitis vinifera HOM05D005938 ORTHO05D007654 8.2e-81 304.7 250 63.6
Psat5g187160 Pisum sativum HOM05D005938 ORTHO05D007654 1.1e-80 304.3 238 63.0
Hund09357 Selenicereus undatus HOM05D005938 ORTHO05D007654 1.1e-80 304.3 252 62.7
Eucgr.A02632 Eucalyptus grandis HOM05D005938 ORTHO05D007654 1.4e-80 303.9 241 63.5
PGR083G1660 Punica granatum HOM05D005938 ORTHO05D007654 1.4e-80 303.9 236 64.4
MSTRG.9633 Avicennia marina HOM05D005938 ORTHO05D007654 3.1e-80 302.8 243 62.1
MD06G1191700 Malus domestica HOM05D005938 ORTHO05D007654 3.1e-80 302.8 238 64.3
COL.COLO4_24542 Corchorus olitorius HOM05D005938 ORTHO05D007654 9.1e-80 301.2 220 70.0
SalBow7G2600 Salvia bowleyana HOM05D005938 ORTHO05D007654 2.0e-79 300.1 241 61.8
FAN18G0122 Fragaria x ananassa HOM05D005938 ORTHO05D007654 3.5e-79 299.3 234 65.0
Gohir.A12G176500 Gossypium hirsutum HOM05D005938 ORTHO05D007654 3.5e-79 299.3 245 63.3
FAN08G1160 Fragaria x ananassa HOM05D005938 ORTHO05D007654 5.9e-79 298.5 234 65.0
ClCG06G016260 Citrullus lanatus HOM05D005938 ORTHO05D007654 7.7e-79 298.1 244 62.7
Ca_13688_v3 Cicer arietinum L. HOM05D005938 ORTHO05D007654 1.0e-78 297.7 234 62.0
FAN13G2109 Fragaria x ananassa HOM05D005938 ORTHO05D007654 1.0e-78 297.7 234 64.5
Ah.02g113360 Amaranthus hybridus HOM05D005938 ORTHO05D007654 1.3e-78 297.4 200 73.0
FvH4_5g15170 Fragaria vesca HOM05D005938 ORTHO05D007654 1.7e-78 297.0 234 64.5
TAR374G0085 Trochodendron aralioides HOM05D005938 ORTHO05D007654 5.0e-78 295.4 237 61.2
TWI15G1099 Tripterygium wilfordii HOM05D005938 ORTHO05D007654 1.1e-77 294.3 201 71.6
HanXRQChr05g0158101 Helianthus annuus HOM05D005938 ORTHO05D007654 1.9e-77 293.5 232 65.9
FAN04G0099 Fragaria x ananassa HOM05D005938 ORTHO05D007654 2.5e-77 293.1 234 64.5
Rhsim12G0157100 Rhododendron simsii HOM05D005938 ORTHO05D007654 4.2e-77 292.4 237 64.1
Cfa018959 Carpinus fangiana HOM05D005938 ORTHO05D007654 1.2e-76 290.8 204 71.1
Cpa.g.c30141.1 Carica papaya HOM05D005938 ORTHO05D007654 1.6e-76 290.4 207 70.5
EL10Ac5g10981 Beta vulgaris HOM05D005938 ORTHO05D007654 2.1e-76 290.0 200 72.0
RcHm_v2.0_Chr7g0181011 Rosa chinensis HOM05D005938 ORTHO05D007654 2.1e-76 290.0 238 62.6
vmacro16554 Vaccinium macrocarpon HOM05D005938 ORTHO05D007654 2.7e-76 289.7 276 56.9
PGSC0003DMG400000598 Solanum tuberosum HOM05D005938 ORTHO05D007654 3.6e-76 289.3 247 59.5
TPR.G11812 Trifolium pratense HOM05D005938 ORTHO05D007654 3.6e-76 289.3 237 61.6
Aqoxy3G03351 Aquilegia oxysepala HOM05D005938 ORTHO05D007654 4.7e-76 288.9 233 63.5
Nitab4.5_0004103g0010 Nicotiana tabacum HOM05D005938 ORTHO05D007654 6.1e-76 288.5 244 58.6
Solyc03g116330.3 Solanum lycopersicum HOM05D005938 ORTHO05D007654 8.0e-76 288.1 243 59.3
Migut.D01830 Erythranthe guttata HOM05D005938 ORTHO05D007654 1.0e-75 287.7 234 62.0
Nn3g17204 Nelumbo nucifera HOM05D005938 ORTHO05D007654 1.0e-75 287.7 258 58.9
Potri.018G047400 Populus trichocarpa HOM05D005938 ORTHO05D007654 1.0e-75 287.7 221 68.3
AUR62008387 Chenopodium quinoa HOM05D005938 ORTHO05D007654 1.4e-75 287.3 196 71.9
TAR622G1433 Trochodendron aralioides HOM05D005938 ORTHO05D007654 3.0e-75 286.2 217 65.0
AUR62021711 Chenopodium quinoa HOM05D005938 ORTHO05D007654 4.0e-75 285.8 196 71.4
PSO063G3647 Papaver somniferum HOM05D005938 ORTHO05D007654 1.2e-74 284.3 238 60.9
Atru.BG.195.p Acer truncatum HOM05D005938 ORTHO05D007654 1.5e-74 283.9 195 71.3
ECA246G4427 Erigeron canadensis HOM05D005938 ORTHO05D007654 1.5e-74 283.9 245 59.2
SGA_v2.0_scaffold114G31898 Striga asiatica HOM05D005938 ORTHO05D007654 1.5e-74 283.9 250 60.4
CAN.G407.117 Capsicum annuum HOM05D005938 ORTHO05D007654 4.4e-74 282.3 243 57.6
arahy.Tifrunner.gnm1.ann1.KGI6NM Arachis hypogaea HOM05D005938 ORTHO05D007654 1.3e-73 280.8 253 55.7
arahy.Tifrunner.gnm1.ann1.VVHC1U Arachis hypogaea HOM05D005938 ORTHO05D007654 1.7e-73 280.4 253 56.1
Oeu016169.1 Olea europaea HOM05D005938 ORTHO05D007654 1.7e-73 280.4 214 65.9
Lj9A462G75 Lonicera japonica HOM05D005938 ORTHO05D007654 4.8e-73 278.9 225 60.9
Peaxi162Scf00274g00846 Petunia axillaris HOM05D005938 ORTHO05D007654 6.3e-73 278.5 250 58.0
CDE02G0021 Ceratophyllum demersum HOM05D005938 ORTHO05D007654 1.2e-71 274.2 215 60.9
Sabra18G0045600 Salix brachista HOM05D005938 ORTHO05D007654 1.2e-71 274.2 199 69.3
Duzib205G1012 Durio zibethinus HOM05D005938 ORTHO05D007654 2.0e-71 273.5 245 61.2
Nitab4.5_0002257g0140 Nicotiana tabacum HOM05D005938 ORTHO05D007654 3.5e-71 272.7 272 52.2
DCAR_021525 Daucus carota HOM05D005938 ORTHO05D007654 6.5e-70 268.5 240 58.3
unitig_744.g24387 Utricularia gibba HOM05D005938 ORTHO05D007654 6.5e-70 268.5 232 57.8
Thecc.03G084300 Theobroma cacao HOM05D005938 ORTHO05D007654 2.5e-69 266.5 245 59.6
Sopen03g035260 Solanum pennellii HOM05D005938 ORTHO05D007654 7.2e-69 265.0 196 63.3
Lsat_1_v5_gn_5_19401 Lactuca sativa HOM05D005938 ORTHO05D007654 3.6e-68 262.7 245 55.9
CSS0050188 Camellia sinensis var. sinensis HOM05D005938 ORTHO05D007654 1.0e-67 261.2 210 63.8
Manes.06G094000 Manihot esculenta HOM05D005938 ORTHO05D007654 4.4e-66 255.8 242 55.8
ATR0564G381 Amborella trichopoda HOM05D005938 ORTHO05D007654 2.4e-64 250.0 220 59.1
Os08g0171000 Oryza sativa ssp. japonica HOM05D005938 ORTHO05D007654 1.3e-62 244.2 200 58.5
Mapoly0002s0073 Marchantia polymorpha HOM05D005938 ORTHO05D007654 3.8e-62 242.7 195 62.1
SEGI_36934 Sequoiadendron giganteum HOM05D005938 ORTHO05D007654 8.6e-62 241.5 236 52.1
SHI04241 Sapria himalayana HOM05D005938 ORTHO05D007654 2.8e-60 236.5 299 47.8
Haze_07341 Corylus avellana HOM05D005938 ORTHO05D007654 1.4e-51 207.6 331 43.2
FAN10G3346 Fragaria x ananassa HOM05D005938 ORTHO05D007654 4.4e-50 202.6 146 68.5
Pp3c17_15280 Physcomitrium patens HOM05D005938 ORTHO05D007654 7.5e-50 201.8 198 52.5
AagrBONN_evm.TU.Sc2ySwM_117.1670 Anthoceros agrestis HOM05D005938 ORTHO05D007654 1.7e-49 200.7 217 50.7
SMO270G0117 Selaginella moellendorffii HOM05D005938 ORTHO05D007654 3.5e-47 193.0 199 50.3
Medtr0036s0320 Medicago truncatula HOM05D005938 ORTHO05D007654 7.8e-47 191.8 124 73.4
CBR_g66809 Chara braunii HOM05D005938 ORTHO05D007654 2.3e-46 190.3 203 45.3
Glyma.04G170700 Glycine max HOM05D005938 ORTHO05D007654 1.1e-45 188.0 165 57.6
Zm00001eb415000 Zea mays HOM05D005938 ORTHO05D007654 1.1e-43 181.4 198 53.0
VMungo1309G2195 Vigna mungo HOM05D005938 ORTHO05D007654 6.6e-38 162.2 110 70.9
Hma1.2p1_0735F.1_g210490 Hydrangea macrophylla HOM05D005938 ORTHO05D007654 4.0e-35 152.9 103 73.8
MBI02_g23681_MAGBIO Magnolia biondii HOM05D005938 ORTHO05D007654 7.1e-32 142.1 99 71.7
arahy.Tifrunner.gnm1.ann1.518D86 Arachis hypogaea HOM05D005938 ORTHO05D007654 1.0e-30 138.3 144 47.9
FAN18G0131 Fragaria x ananassa HOM05D005938 ORTHO05D007654 2.5e-29 133.7 155 50.3
Medtr3g040450 Medicago truncatula HOM05D005938 ORTHO05D007654 5.6e-29 132.5 145 50.3
VMungo0019G0001 Vigna mungo HOM05D005938 ORTHO05D007654 8.1e-28 128.6 197 43.1
MCO16G029 Micromonas commoda HOM05D005938 ORTHO05D007654 4.0e-27 126.3 220 35.0
FAN01G1759 Fragaria x ananassa HOM05D005938 ORTHO05D007654 2.4e-24 117.1 106 58.5
Cre12.g513300 Chlamydomonas reinhardtii HOM05D005938 ORTHO05D007654 7.8e-23 112.1 218 34.4
MD17G1094500 Malus domestica HOM05D005938 ORTHO05D007654 2.5e-21 107.1 79 63.3
PRCOL_00003564 Prasinoderma coloniale HOM05D005938 ORTHO05D007654 1.6e-20 104.4 196 37.2
QL12p034017 Quercus lobata HOM05D000176 ORTHO05D000106 2.2e-17 94.0 140 40.0
QL02p071402 Quercus lobata HOM05D005938 ORTHO05D028155 2.9e-17 93.6 69 60.9
QL07p001114 Quercus lobata HOM05D005938 ORTHO05D007654 2.4e-16 90.5 59 71.2
MBI15_g27838_MAGBIO Magnolia biondii HOM05D005938 ORTHO05D007654 1.5e-10 71.2 52 69.2
Thhalv10000377m.g Eutrema salsugineum HOM05D005938 ORTHO05D007654 2.2e-09 67.4 92 46.7


User provided reference genes

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