Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG4G4510 Aethionema arabicum HOM05D006637 ORTHO05D001736 1.8e-128 463.0 252 100.0
AT1G74220 Arabidopsis thaliana HOM05D006637 ORTHO05D001736 1.5e-74 283.9 258 67.4
Sp5g29400 Schrenkiella parvula HOM05D006637 ORTHO05D001736 5.7e-74 282.0 271 62.4
CARHR067480 Cardamine hirsuta HOM05D006637 ORTHO05D001736 3.1e-72 276.2 263 63.1
AL2G34100 Arabidopsis lyrata HOM05D006637 ORTHO05D001736 3.2e-69 266.2 267 62.2
Carub.0002s2101 Capsella rubella HOM05D006637 ORTHO05D001736 2.1e-68 263.5 271 61.6
BcaB05g24843 Brassica carinata HOM05D006637 ORTHO05D001736 1.1e-61 241.1 256 57.4
BcaC03g15494 Brassica carinata HOM05D006637 ORTHO05D001736 3.2e-61 239.6 253 58.1
BcaC08g45599 Brassica carinata HOM05D006637 ORTHO05D001736 3.2e-61 239.6 247 60.7
BraA02t06967Z Brassica rapa HOM05D006637 ORTHO05D001736 3.2e-61 239.6 250 58.0
BolC6t38463H Brassica oleracea HOM05D006637 ORTHO05D001736 7.2e-61 238.4 248 60.5
BraA07t31550Z Brassica rapa HOM05D006637 ORTHO05D001736 7.2e-61 238.4 263 58.6
C02p31780 Brassica napus HOM05D006637 ORTHO05D001736 4.0e-59 232.6 252 57.5
BraA07t30588Z Brassica rapa HOM05D006637 ORTHO05D001736 5.2e-59 232.3 248 59.3
BolC2t09205H Brassica oleracea HOM05D006637 ORTHO05D001736 1.2e-58 231.1 253 56.9
A07p40060 Brassica napus HOM05D006637 ORTHO05D001736 4.4e-58 229.2 259 59.5
A02p19190 Brassica napus HOM05D006637 ORTHO05D001736 3.7e-57 226.1 253 55.7
Thhalv10018880m.g Eutrema salsugineum HOM05D006637 ORTHO05D001736 4.8e-57 225.7 262 57.6
C06p48410 Brassica napus HOM05D006637 ORTHO05D001736 3.5e-55 219.5 262 54.6
C06p33490 Brassica napus HOM05D000311 ORTHO05D000183 6.3e-49 198.7 204 62.3
BcaC03g15490 Brassica carinata HOM05D006637 ORTHO05D001736 2.4e-48 196.8 239 56.9
A07p29500 Brassica napus HOM05D000311 ORTHO05D000183 2.4e-48 196.8 204 61.8
BcaC08g46854 Brassica carinata HOM05D006637 ORTHO05D001736 2.7e-47 193.4 252 52.0
THA.LOC104808038 Tarenaya hassleriana HOM05D006637 ORTHO05D001736 1.4e-43 181.0 252 48.8
BolC6t39870H Brassica oleracea HOM05D006637 ORTHO05D001736 1.8e-43 180.6 263 47.9
Cpa.g.sc10.158 Carica papaya HOM05D006637 ORTHO05D001736 2.3e-22 110.5 264 36.0
Atru.chr9.567 Acer truncatum HOM05D006637 ORTHO05D001736 2.3e-19 100.5 262 34.0
TWI15G0882 Tripterygium wilfordii HOM05D006637 ORTHO05D001736 8.9e-19 98.6 290 33.8
Lalb_Chr13g0302841 Lupinus albus HOM05D006637 ORTHO05D001736 1.2e-18 98.2 275 35.3
Manes.06G084300 Manihot esculenta HOM05D006637 ORTHO05D001736 7.6e-18 95.5 255 34.5
Cfa019342 Carpinus fangiana HOM05D000824 ORTHO05D003555 1.7e-17 94.4 193 38.9
Thecc.03G102400 Theobroma cacao HOM05D006637 ORTHO05D001736 2.2e-17 94.0 237 37.1
Duzib205G1030 Durio zibethinus HOM05D006637 ORTHO05D001736 6.4e-17 92.4 259 34.4
Potri.015G057200 Populus trichocarpa HOM05D006637 ORTHO05D001736 6.4e-17 92.4 256 34.4
Duzib068G0311 Durio zibethinus HOM05D006637 ORTHO05D001736 8.4e-17 92.0 233 36.1
Potri.012G061700 Populus trichocarpa HOM05D006637 ORTHO05D001736 1.9e-16 90.9 257 33.9
TWI81G0402 Tripterygium wilfordii HOM05D006637 ORTHO05D001736 3.2e-16 90.1 276 34.1
Sed0008450 Sechium edule HOM05D006637 ORTHO05D001736 4.1e-16 89.7 254 36.2
Aqoxy3G03685 Aquilegia oxysepala HOM05D006637 ORTHO05D001736 5.4e-16 89.4 207 41.1
Phvul.009G201900 Phaseolus vulgaris HOM05D006637 ORTHO05D001736 9.2e-16 88.6 270 33.7
Psat4g068920 Pisum sativum HOM05D006637 ORTHO05D001736 9.2e-16 88.6 265 40.0
Ciclev10023416m.g Citrus clementina HOM05D006637 ORTHO05D001736 1.2e-15 88.2 273 34.4
Lj4g0016086 Lotus japonicus HOM05D006637 ORTHO05D001736 2.1e-15 87.4 254 33.9
Prupe.5G205600 Prunus persica HOM05D006637 ORTHO05D001736 2.1e-15 87.4 253 35.2
Gohir.A12G182900 Gossypium hirsutum HOM05D006637 ORTHO05D001736 2.7e-15 87.0 228 36.4
MD14G1212300 Malus domestica HOM05D006637 ORTHO05D001736 4.6e-15 86.3 270 35.6
Ca_21771_v3 Cicer arietinum L. HOM05D006637 ORTHO05D001736 1.0e-14 85.1 246 33.3
BcaB05g24564 Brassica carinata HOM05D006637 ORTHO05D001736 1.3e-14 84.7 84 63.1
CiPaw.11G054000 Carya illinoinensis HOM05D006637 ORTHO05D001736 1.3e-14 84.7 257 33.1
Lj5C102T22 Lonicera japonica HOM05D006637 ORTHO05D001736 1.3e-14 84.7 245 33.9
Gohir.D12G186000 Gossypium hirsutum HOM05D006637 ORTHO05D001736 3.0e-14 83.6 233 34.8
Gorai.008G199400 Gossypium raimondii HOM05D006637 ORTHO05D001736 3.0e-14 83.6 233 34.8
Nn4g23435 Nelumbo nucifera HOM05D006637 ORTHO05D001736 3.0e-14 83.6 212 34.0
Manes.14G086000 Manihot esculenta HOM05D006637 ORTHO05D001736 5.1e-14 82.8 267 34.5
FvH4_5g13780 Fragaria vesca HOM05D006637 ORTHO05D001736 6.6e-14 82.4 271 31.0
Phvul.003G184500 Phaseolus vulgaris HOM05D006637 ORTHO05D001736 1.1e-13 81.6 247 33.2
Sabra12G0044700 Salix brachista HOM05D006637 ORTHO05D001736 1.1e-13 81.6 230 35.2
FAN08G0389 Fragaria x ananassa HOM05D006637 ORTHO05D001736 1.5e-13 81.3 282 30.5
QL10p019649 Quercus lobata HOM05D006637 ORTHO05D001736 1.5e-13 81.3 216 35.2
TPR.G2044 Trifolium pratense HOM05D006637 ORTHO05D001736 1.5e-13 81.3 249 34.9
CsaV3_1G002960 Cucumis sativus L. HOM05D006637 ORTHO05D001736 1.9e-13 80.9 255 32.9
FAN18G2922 Fragaria x ananassa HOM05D006637 ORTHO05D001736 2.5e-13 80.5 271 31.0
MD06G1225400 Malus domestica HOM05D006637 ORTHO05D001736 2.5e-13 80.5 195 37.9
VMungo1215G2016 Vigna mungo HOM05D006637 ORTHO05D001736 3.3e-13 80.1 252 34.5
Glyma.05G020700 Glycine max HOM05D006637 ORTHO05D001736 4.3e-13 79.7 248 31.0
FAN13G0480 Fragaria x ananassa HOM05D006637 ORTHO05D001736 7.3e-13 79.0 282 30.5
MELO3C017227.2 Cucumis melo HOM05D006637 ORTHO05D001736 2.8e-12 77.0 255 32.5
COL.COLO4_06852 Corchorus olitorius HOM05D006637 ORTHO05D001736 3.6e-12 76.6 176 38.1
PGR083G0945 Punica granatum HOM05D006637 ORTHO05D001736 3.6e-12 76.6 286 33.2
RcHm_v2.0_Chr7g0183151 Rosa chinensis HOM05D006637 ORTHO05D001736 3.6e-12 76.6 277 31.4
ClCG06G015610 Citrullus lanatus HOM05D006637 ORTHO05D001736 8.1e-12 75.5 191 38.2
AT2G03630 Arabidopsis thaliana HOM05D003787 ORTHO05D001736 1.1e-11 75.1 264 28.8
ATR0177G031 Amborella trichopoda HOM05D003787 ORTHO05D001736 1.4e-11 74.7 203 37.4
Haze_07733 Corylus avellana HOM05D006637 ORTHO05D001736 1.4e-11 74.7 146 39.7
Oeu044877.1 Olea europaea HOM05D006637 ORTHO05D001736 1.8e-11 74.3 188 37.2
Glyma.06G204000 Glycine max HOM05D006637 ORTHO05D001736 2.4e-11 73.9 201 37.3
TAR371G0370 Trochodendron aralioides HOM05D006637 ORTHO05D001736 2.4e-11 73.9 255 31.4
Carub.0005s0277 Capsella rubella HOM05D003787 ORTHO05D001736 3.1e-11 73.6 276 29.7
Actinidia04823 Actinidia chinensis HOM05D006637 ORTHO05D001736 4.0e-11 73.2 158 36.1
Medtr3g025960 Medicago truncatula HOM05D006637 ORTHO05D001736 4.0e-11 73.2 277 28.5
Glyma.17G078600 Glycine max HOM05D006637 ORTHO05D001736 5.2e-11 72.8 206 35.0
PSO017G7320 Papaver somniferum HOM05D006637 ORTHO05D001736 5.2e-11 72.8 222 32.9
Potri.010G158000 Populus trichocarpa HOM05D003787 ORTHO05D001736 5.2e-11 72.8 256 32.4
Sp2g14470 Schrenkiella parvula HOM05D003787 ORTHO05D001736 6.9e-11 72.4 76 52.6
PSO478G0913 Papaver somniferum HOM05D006637 ORTHO05D001736 8.9e-11 72.0 214 33.2
MBI19_g14007_MAGBIO Magnolia biondii HOM05D006637 ORTHO05D001736 1.5e-10 71.2 249 30.5
GSVIVG01012223001 Vitis vinifera HOM05D003787 ORTHO05D001736 1.5e-10 71.2 202 33.2
Lalb_Chr07g0178311 Lupinus albus HOM05D006637 ORTHO05D001736 2.0e-10 70.9 261 29.9
CAN.G1228.21 Capsicum annuum HOM05D006637 ORTHO05D001736 2.6e-10 70.5 256 30.9
Cc00_g04710 Coffea canephora HOM05D006637 ORTHO05D001736 2.6e-10 70.5 184 34.8
Nn3g17457 Nelumbo nucifera HOM05D003787 ORTHO05D001736 2.6e-10 70.5 261 30.3
Sed0021860 Sechium edule HOM05D006637 ORTHO05D001736 2.6e-10 70.5 252 32.1
Gohir.A03G070200 Gossypium hirsutum HOM05D006637 ORTHO05D001736 3.4e-10 70.1 174 35.6
Dinv22776 Davidia involucrata HOM05D006637 ORTHO05D001736 4.4e-10 69.7 220 34.5
CiPaw.05G124800 Carya illinoinensis HOM05D003787 ORTHO05D001736 5.8e-10 69.3 190 36.8
PGSC0003DMG400024635 Solanum tuberosum HOM05D006637 ORTHO05D001736 5.8e-10 69.3 251 28.3
Glyma.04G162200 Glycine max HOM05D006637 ORTHO05D001736 7.6e-10 68.9 265 33.6
CDE02G2765 Ceratophyllum demersum HOM05D003787 ORTHO05D001736 1.3e-09 68.2 219 30.6
A09p24510 Brassica napus HOM05D003787 ORTHO05D001736 1.7e-09 67.8 230 33.0
Thhalv10005553m.g Eutrema salsugineum HOM05D003787 ORTHO05D001736 1.7e-09 67.8 175 36.6
PSO017G1216 Papaver somniferum HOM05D006637 ORTHO05D001736 1.7e-09 67.8 200 39.5
vmacro16493 Vaccinium macrocarpon HOM05D006637 ORTHO05D001736 1.7e-09 67.8 193 34.2
Gohir.D11G036700 Gossypium hirsutum HOM05D006637 ORTHO05D001736 2.2e-09 67.4 259 28.6
BraA09t38045Z Brassica rapa HOM05D003787 ORTHO05D001736 3.8e-09 66.6 243 31.7
Gohir.D03G096675 Gossypium hirsutum HOM05D006637 ORTHO05D001736 3.8e-09 66.6 192 34.4
AUR62021555 Chenopodium quinoa HOM05D006637 ORTHO05D001736 4.9e-09 66.2 86 48.8
PSO478G3423 Papaver somniferum HOM05D006637 ORTHO05D001736 4.9e-09 66.2 200 39.5
Gorai.007G039500 Gossypium raimondii HOM05D006637 ORTHO05D001736 6.4e-09 65.9 259 28.6
Sc04g0004350 Simmondsia chinensis HOM05D006637 ORTHO05D001736 8.4e-09 65.5 277 33.2
AUR62008536 Chenopodium quinoa HOM05D006637 ORTHO05D001736 1.1e-08 65.1 107 43.9
Rhsim12G0148600 Rhododendron simsii HOM05D006637 ORTHO05D001736 1.1e-08 65.1 178 33.1
DCAR_011559 Daucus carota HOM05D006637 ORTHO05D001736 1.9e-08 64.3 78 50.0
PGR119G1736 Punica granatum HOM05D003787 ORTHO05D001736 1.9e-08 64.3 205 31.2
Sc10g0009690 Simmondsia chinensis HOM05D006637 ORTHO05D001736 1.9e-08 64.3 275 28.4
Ca_14358_v3 Cicer arietinum L. HOM05D006637 ORTHO05D001736 2.4e-08 63.9 292 32.2
Thecc.02G330000 Theobroma cacao HOM05D003787 ORTHO05D001736 2.4e-08 63.9 76 50.0
AL5G13410 Arabidopsis lyrata HOM05D006637 ORTHO05D001736 3.2e-08 63.5 73 52.1
Medtr4g109570 Medicago truncatula HOM05D006637 ORTHO05D001736 3.2e-08 63.5 239 32.6
GSVIVG01007850001 Vitis vinifera HOM05D006637 ORTHO05D001736 3.2e-08 63.5 252 30.2
BcaC04g21469 Brassica carinata HOM05D000070 ORTHO05D006344 5.4e-08 62.8 89 41.6
Gorai.003G101400 Gossypium raimondii HOM05D006637 ORTHO05D001736 7.1e-08 62.4 192 35.4
TPR.G12192 Trifolium pratense HOM05D006637 ORTHO05D001736 7.1e-08 62.4 259 30.5
TAR622G0628 Trochodendron aralioides HOM05D003787 ORTHO05D001736 9.3e-08 62.0 255 31.0
Ciclev10033684m.g Citrus clementina HOM05D003787 ORTHO05D001736 1.2e-07 61.6 236 30.9
Lsat_1_v5_gn_4_111160 Lactuca sativa HOM05D006637 ORTHO05D001736 1.2e-07 61.6 60 53.3
Cfa007670 Carpinus fangiana HOM05D003787 ORTHO05D001736 1.6e-07 61.2 265 28.7
Psat5g203560 Pisum sativum HOM05D006637 ORTHO05D001736 1.6e-07 61.2 260 29.6
CSS0001662 Camellia sinensis var. sinensis HOM05D003787 ORTHO05D001736 2.1e-07 60.8 272 30.1
Sabra10G0120000 Salix brachista HOM05D003787 ORTHO05D001736 2.1e-07 60.8 185 31.9
Sopen03g034130 Solanum pennellii HOM05D006637 ORTHO05D001736 2.7e-07 60.5 255 28.6
THA.LOC104801821 Tarenaya hassleriana HOM05D003787 ORTHO05D001736 2.7e-07 60.5 253 28.5
TWI31G1463 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 2.7e-07 60.5 85 44.7
Sc12g0007280 Simmondsia chinensis HOM05D006637 ORTHO05D001736 3.5e-07 60.1 283 27.6
TWI79G0236 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 3.5e-07 60.1 214 29.4
MELO3C012154.2 Cucumis melo HOM05D003787 ORTHO05D001736 6.0e-07 59.3 108 40.7
Potri.008G096300 Populus trichocarpa HOM05D003787 ORTHO05D001736 6.0e-07 59.3 192 32.8
Aqoxy3G00509 Aquilegia oxysepala HOM05D006637 ORTHO05D001736 7.8e-07 58.9 194 33.5
Haze_11903 Corylus avellana HOM05D003787 ORTHO05D001736 7.8e-07 58.9 83 44.6
Duzib268G1106 Durio zibethinus HOM05D003787 ORTHO05D001736 7.8e-07 58.9 182 34.1
Sabra08G0072600 Salix brachista HOM05D003787 ORTHO05D001736 7.8e-07 58.9 194 32.0
Solyc03g115060.3 Solanum lycopersicum HOM05D006637 ORTHO05D001736 7.8e-07 58.9 248 29.0
Actinidia17586 Actinidia chinensis HOM05D003787 ORTHO05D001736 1.3e-06 58.2 256 32.4
Duzib251G0768 Durio zibethinus HOM05D003787 ORTHO05D001736 1.7e-06 57.8 182 35.2
CDE05G3272 Ceratophyllum demersum HOM05D003787 ORTHO05D001736 2.3e-06 57.4 221 28.5
CsaV3_5G033340 Cucumis sativus L. HOM05D003787 ORTHO05D001736 2.3e-06 57.4 84 47.6
Dinv16736 Davidia involucrata HOM05D003787 ORTHO05D001736 2.3e-06 57.4 123 39.8
SHI15724 Sapria himalayana HOM05D003787 ORTHO05D001736 2.3e-06 57.4 195 32.3
Solyc02g088840.3 Solanum lycopersicum HOM05D003787 ORTHO05D001736 2.3e-06 57.4 83 45.8
BolC9t56002H Brassica oleracea HOM05D005523 ORTHO05D007089 3.0e-06 57.0 217 29.5
COL.COLO4_27878 Corchorus olitorius HOM05D003787 ORTHO05D001736 3.9e-06 56.6 180 31.7
Gohir.A12G161000 Gossypium hirsutum HOM05D039012 ORTHO05D001736 3.9e-06 56.6 72 44.4
Gorai.008G176900 Gossypium raimondii HOM05D039012 ORTHO05D001736 3.9e-06 56.6 72 44.4
Medtr5g045480 Medicago truncatula HOM05D003787 ORTHO05D001736 5.1e-06 56.2 92 43.5
Os07g0298100 Oryza sativa ssp. japonica HOM05D003787 ORTHO05D001736 5.1e-06 56.2 260 30.0
CSS0036361 Camellia sinensis var. sinensis HOM05D006637 ORTHO05D001736 6.6e-06 55.8 191 32.5
ClCG05G023700 Citrullus lanatus HOM05D003787 ORTHO05D001736 6.6e-06 55.8 185 35.7
Gohir.D12G164300 Gossypium hirsutum HOM05D039012 ORTHO05D001736 6.6e-06 55.8 72 44.4
Atru.chr8.428 Acer truncatum HOM05D003787 ORTHO05D001736 8.7e-06 55.5 227 28.6
Cpa.g.sc1.128 Carica papaya HOM05D003787 ORTHO05D001736 8.7e-06 55.5 97 42.3
Dinv33830 Davidia involucrata HOM05D003787 ORTHO05D001736 8.7e-06 55.5 216 34.7
Migut.K01274 Erythranthe guttata HOM05D003787 ORTHO05D001736 8.7e-06 55.5 95 45.3


User provided reference genes

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