Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG4G430 Aethionema arabicum HOM05D004884 ORTHO05D005873 9.5e-95 350.1 172 100.0
Dinv30589 Davidia involucrata HOM05D004884 ORTHO05D005873 1.5e-68 263.1 135 91.9
THA.LOC104812503 Tarenaya hassleriana HOM05D004884 ORTHO05D005873 1.5e-68 263.1 133 93.2
AL1G27470 Arabidopsis lyrata HOM05D004884 ORTHO05D005873 2.0e-68 262.7 145 89.0
AT1G15370 Arabidopsis thaliana HOM05D004884 ORTHO05D005873 2.0e-68 262.7 145 89.0
Carub.0001s1514 Capsella rubella HOM05D004884 ORTHO05D005873 2.6e-68 262.3 143 89.5
CARHR015900 Cardamine hirsuta HOM05D004884 ORTHO05D005873 5.8e-68 261.2 145 88.3
THA.LOC104808231 Tarenaya hassleriana HOM05D004884 ORTHO05D005873 5.8e-68 261.2 133 93.2
Hma1.2p1_0515F.1_g170110 Hydrangea macrophylla HOM05D004884 ORTHO05D005873 4.9e-67 258.1 135 88.9
ECA240G3509 Erigeron canadensis HOM05D004884 ORTHO05D005873 6.4e-67 257.7 133 91.0
CSS0003587 Camellia sinensis var. sinensis HOM05D004884 ORTHO05D005873 8.4e-67 257.3 135 90.4
PGR031G3479 Punica granatum HOM05D004884 ORTHO05D005873 1.4e-66 256.5 133 91.0
Lsat_1_v5_gn_1_2440 Lactuca sativa HOM05D004884 ORTHO05D005873 3.2e-66 255.4 133 89.5
MD17G1208900 Malus domestica HOM05D004884 ORTHO05D005873 3.2e-66 255.4 133 89.5
ECA247G2927 Erigeron canadensis HOM05D001354 ORTHO05D002582 4.1e-66 255.0 133 90.2
Prupe.3G084300 Prunus persica HOM05D004884 ORTHO05D005873 4.1e-66 255.0 133 89.5
Actinidia18100 Actinidia chinensis HOM05D004884 ORTHO05D005873 5.4e-66 254.6 135 87.4
Sp1g13700 Schrenkiella parvula HOM05D004884 ORTHO05D005873 7.1e-66 254.2 143 86.7
A09p61460 Brassica napus HOM05D004884 ORTHO05D005873 9.2e-66 253.8 168 75.6
HanXRQChr02g0046821 Helianthus annuus HOM05D004884 ORTHO05D005873 1.2e-65 253.4 133 88.7
QL05p029075 Quercus lobata HOM05D004884 ORTHO05D005873 1.6e-65 253.1 133 88.7
Rhsim10G0061400 Rhododendron simsii HOM05D004884 ORTHO05D005873 1.6e-65 253.1 135 85.9
BcaB03g14545 Brassica carinata HOM05D004884 ORTHO05D005873 2.1e-65 252.7 143 86.0
BcaC05g25475 Brassica carinata HOM05D004884 ORTHO05D005873 2.1e-65 252.7 143 86.0
BcaC05g25490 Brassica carinata HOM05D004884 ORTHO05D005873 2.1e-65 252.7 143 86.0
A06p11400 Brassica napus HOM05D004884 ORTHO05D005873 2.1e-65 252.7 143 86.0
C05p13510 Brassica napus HOM05D004884 ORTHO05D005873 2.1e-65 252.7 143 86.0
C08p45030 Brassica napus HOM05D004884 ORTHO05D005873 2.1e-65 252.7 143 86.0
BolC5t30088H Brassica oleracea HOM05D004884 ORTHO05D005873 2.1e-65 252.7 143 86.0
BraA06t24317Z Brassica rapa HOM05D004884 ORTHO05D005873 2.1e-65 252.7 143 86.0
BraA09t41517Z Brassica rapa HOM05D004884 ORTHO05D005873 2.1e-65 252.7 143 86.0
Thhalv10009024m.g Eutrema salsugineum HOM05D004884 ORTHO05D005873 2.1e-65 252.7 143 86.0
Manes.04G114100 Manihot esculenta HOM05D004884 ORTHO05D005873 2.1e-65 252.7 135 89.6
RcHm_v2.0_Chr2g0135941 Rosa chinensis HOM05D004884 ORTHO05D005873 2.1e-65 252.7 133 88.0
Oeu052257.1 Olea europaea HOM05D004884 ORTHO05D005873 2.7e-65 252.3 133 88.7
VMungo0331G0880 Vigna mungo HOM05D004884 ORTHO05D005873 2.7e-65 252.3 133 88.7
Migut.D01065 Erythranthe guttata HOM05D004884 ORTHO05D005873 3.5e-65 251.9 133 89.5
Oeu045160.1 Olea europaea HOM05D004884 ORTHO05D005873 3.5e-65 251.9 133 88.7
Lalb_Chr22g0350881 Lupinus albus HOM05D004884 ORTHO05D005873 4.6e-65 251.5 133 88.7
MSTRG.9432 Avicennia marina HOM05D004884 ORTHO05D005873 6.0e-65 251.1 133 88.0
Phvul.010G154800 Phaseolus vulgaris HOM05D004884 ORTHO05D005873 6.0e-65 251.1 133 88.0
BcaC07g41506 Brassica carinata HOM05D004884 ORTHO05D005873 7.8e-65 250.8 143 85.3
BolC8t52049H Brassica oleracea HOM05D004884 ORTHO05D005873 7.8e-65 250.8 143 85.3
Glyma.08G211500 Glycine max HOM05D004884 ORTHO05D005873 7.8e-65 250.8 133 88.0
SGA_v2.0_scaffold117G32369 Striga asiatica HOM05D004884 ORTHO05D005873 1.0e-64 250.4 133 88.7
Thhalv10019295m.g Eutrema salsugineum HOM05D004884 ORTHO05D005873 1.3e-64 250.0 143 86.0
CSS0011163 Camellia sinensis var. sinensis HOM05D004884 ORTHO05D005873 1.7e-64 249.6 131 89.3
Cc04_g04240 Coffea canephora HOM05D004884 ORTHO05D005873 1.7e-64 249.6 133 88.0
Lj3g0000080 Lotus japonicus HOM05D004884 ORTHO05D005873 1.7e-64 249.6 133 86.5
Psat5g301920 Pisum sativum HOM05D004884 ORTHO05D005873 1.7e-64 249.6 133 88.0
SalBow3G1656 Salvia bowleyana HOM05D004884 ORTHO05D005873 1.7e-64 249.6 133 88.0
Ciclev10026708m.g Citrus clementina HOM05D004884 ORTHO05D005873 3.0e-64 248.8 133 88.7
Lalb_Chr04g0262431 Lupinus albus HOM05D004884 ORTHO05D005873 3.0e-64 248.8 133 86.5
Eucgr.F02527 Eucalyptus grandis HOM05D004884 ORTHO05D005873 3.9e-64 248.4 131 87.8
vmacro20098 Vaccinium macrocarpon HOM05D004884 ORTHO05D005873 3.9e-64 248.4 135 84.4
CAN.G407.94 Capsicum annuum HOM05D004884 ORTHO05D005873 5.1e-64 248.1 133 85.0
GSVIVG01017313001 Vitis vinifera HOM05D004884 ORTHO05D005873 5.1e-64 248.1 133 86.5
Glyma.15G008700 Glycine max HOM05D004884 ORTHO05D005873 6.6e-64 247.7 128 89.1
Atru.chr1.2995 Acer truncatum HOM05D004884 ORTHO05D005873 8.6e-64 247.3 135 86.7
Glyma.07G031300 Glycine max HOM05D004884 ORTHO05D005873 1.1e-63 246.9 133 87.2
Solyc03g116600.3 Solanum lycopersicum HOM05D004884 ORTHO05D005873 1.1e-63 246.9 133 84.2
Sopen03g035510 Solanum pennellii HOM05D004884 ORTHO05D005873 1.1e-63 246.9 133 84.2
unitig_747.g21296 Utricularia gibba HOM05D004884 ORTHO05D005873 1.1e-63 246.9 133 84.2
Medtr2g103690 Medicago truncatula HOM05D004884 ORTHO05D005873 1.5e-63 246.5 133 87.2
Thecc.06G021400 Theobroma cacao HOM05D004884 ORTHO05D005873 1.5e-63 246.5 133 85.7
COL.COLO4_12946 Corchorus olitorius HOM05D004884 ORTHO05D005873 1.9e-63 246.1 133 85.7
FvH4_6g29940 Fragaria vesca HOM05D004884 ORTHO05D005873 1.9e-63 246.1 133 85.7
FAN14G1538 Fragaria x ananassa HOM05D004884 ORTHO05D005873 1.9e-63 246.1 133 85.7
Sabra01G0135700 Salix brachista HOM05D004884 ORTHO05D005873 1.9e-63 246.1 133 86.5
CiPaw.08G011500 Carya illinoinensis HOM05D004884 ORTHO05D005873 3.3e-63 245.4 133 85.0
PGSC0003DMG400000635 Solanum tuberosum HOM05D004884 ORTHO05D005873 4.3e-63 245.0 133 83.5
FAN09G2574 Fragaria x ananassa HOM05D004884 ORTHO05D005873 5.6e-63 244.6 133 85.0
Gohir.D10G076700 Gossypium hirsutum HOM05D004884 ORTHO05D005873 5.6e-63 244.6 133 86.5
Potri.001G193100 Populus trichocarpa HOM05D004884 ORTHO05D005873 5.6e-63 244.6 133 85.7
Solyc06g068080.4 Solanum lycopersicum HOM05D004884 ORTHO05D005873 5.6e-63 244.6 133 84.2
Sopen06g025360 Solanum pennellii HOM05D004884 ORTHO05D005873 5.6e-63 244.6 133 84.2
PGSC0003DMG400028511 Solanum tuberosum HOM05D004884 ORTHO05D005873 5.6e-63 244.6 133 84.2
Aqoxy1G02408 Aquilegia oxysepala HOM05D004884 ORTHO05D005873 9.6e-63 243.8 135 83.7
Nn2g12037 Nelumbo nucifera HOM05D004884 ORTHO05D005873 9.6e-63 243.8 135 83.7
FAN02G1988 Fragaria x ananassa HOM05D004884 ORTHO05D005873 1.2e-62 243.4 133 85.0
Duzib235G0621 Durio zibethinus HOM05D004884 ORTHO05D005873 1.6e-62 243.0 133 85.0
MBI04_g07835_MAGBIO Magnolia biondii HOM05D004884 ORTHO05D005873 4.7e-62 241.5 135 83.7
ClCG05G016940 Citrullus lanatus HOM05D004884 ORTHO05D005873 6.2e-62 241.1 133 83.5
MELO3C003694.2 Cucumis melo HOM05D004884 ORTHO05D005873 6.2e-62 241.1 133 83.5
TWI75G0638 Tripterygium wilfordii HOM05D004884 ORTHO05D005873 8.1e-62 240.7 133 83.5
CsaV3_3G046450 Cucumis sativus L. HOM05D004884 ORTHO05D005873 1.4e-61 240.0 133 82.7
PSO455G0277 Papaver somniferum HOM05D004884 ORTHO05D005873 1.4e-61 240.0 133 83.5
ATR1120G077 Amborella trichopoda HOM05D004884 ORTHO05D005873 1.8e-61 239.6 141 77.3
Gohir.A10G074700 Gossypium hirsutum HOM05D004884 ORTHO05D005873 2.4e-61 239.2 133 85.0
Peaxi162Scf00207g00728 Petunia axillaris HOM05D004884 ORTHO05D005873 3.1e-61 238.8 133 83.5
PSO170G2441 Papaver somniferum HOM05D004884 ORTHO05D005873 5.2e-61 238.0 133 82.7
TAR636G0424 Trochodendron aralioides HOM05D004884 ORTHO05D005873 5.2e-61 238.0 135 81.5
QL02p021869 Quercus lobata HOM05D004884 ORTHO05D005873 6.9e-61 237.7 133 82.0
Cfa013154 Carpinus fangiana HOM05D004884 ORTHO05D005873 9.0e-61 237.3 133 82.0
AUR62012381 Chenopodium quinoa HOM05D004884 ORTHO05D005873 9.0e-61 237.3 133 82.7
Sed0027624 Sechium edule HOM05D004884 ORTHO05D005873 1.5e-60 236.5 133 81.2
FAN05G0038 Fragaria x ananassa HOM05D004884 ORTHO05D005873 3.4e-60 235.3 153 74.5
CDE04G3015 Ceratophyllum demersum HOM05D004884 ORTHO05D005873 4.4e-60 235.0 133 82.0
Nitab4.5_0013106g0010 Nicotiana tabacum HOM05D004884 ORTHO05D005873 3.8e-59 231.9 126 85.7
Zm00001eb064920 Zea mays HOM05D004884 ORTHO05D005873 1.1e-58 230.3 133 81.2
EL10Ac2g04219 Beta vulgaris HOM05D004884 ORTHO05D005873 2.4e-58 229.2 143 76.2
Solyc11g008330.3 Solanum lycopersicum HOM05D004884 ORTHO05D005873 2.4e-58 229.2 135 77.0
Gohir.D06G099800 Gossypium hirsutum HOM05D004884 ORTHO05D005873 5.4e-58 228.0 132 78.8
Gorai.010G114700 Gossypium raimondii HOM05D004884 ORTHO05D005873 2.1e-57 226.1 128 79.7
TWI34G0752 Tripterygium wilfordii HOM05D004884 ORTHO05D005873 2.1e-57 226.1 133 75.2
Sed0022166 Sechium edule HOM05D004884 ORTHO05D005873 2.3e-56 222.6 127 79.5
Peaxi162Scf00332g00767 Petunia axillaris HOM05D004884 ORTHO05D005873 3.0e-56 222.2 128 83.6
Nitab4.5_0006187g0010 Nicotiana tabacum HOM05D004884 ORTHO05D005873 1.6e-54 216.5 130 76.2
AUR62031521 Chenopodium quinoa HOM05D004884 ORTHO05D005873 6.2e-54 214.5 183 60.1
arahy.Tifrunner.gnm1.ann1.Q10AU9 Arachis hypogaea HOM05D004884 ORTHO05D005873 1.4e-53 213.4 111 89.2
arahy.Tifrunner.gnm1.ann1.W4DERE Arachis hypogaea HOM05D004884 ORTHO05D005873 1.4e-53 213.4 111 89.2
Dinv38109 Davidia involucrata HOM05D000250 ORTHO05D002477 1.4e-53 213.4 111 89.2
Actinidia36285 Actinidia chinensis HOM05D004884 ORTHO05D005873 3.4e-52 208.8 111 85.6
EL10Ac9g22900 Beta vulgaris HOM05D004884 ORTHO05D005873 4.5e-52 208.4 135 72.6
Nitab4.5_0001764g0110 Nicotiana tabacum HOM05D004884 ORTHO05D005873 2.2e-51 206.1 110 86.4
AUR62012868 Chenopodium quinoa HOM05D004884 ORTHO05D005873 3.8e-51 205.3 133 71.4
CAN.G321.60 Capsicum annuum HOM05D004884 ORTHO05D005873 4.9e-51 204.9 119 78.2
Gorai.011G082800 Gossypium raimondii HOM05D004884 ORTHO05D005873 6.4e-51 204.5 111 86.5
SMO143G0054 Selaginella moellendorffii HOM05D004884 ORTHO05D005873 2.4e-50 202.6 130 71.5
SalBow6G6988 Salvia bowleyana HOM05D004884 ORTHO05D005873 3.2e-50 202.2 109 87.2
Sc23g0006790 Simmondsia chinensis HOM05D004884 ORTHO05D005873 2.7e-49 199.1 111 80.2
Sabra06G0198100 Salix brachista HOM05D004884 ORTHO05D005873 2.3e-48 196.1 113 79.6
Potri.006G253700 Populus trichocarpa HOM05D004884 ORTHO05D005873 1.1e-47 193.7 116 75.9
Peaxi162Scf00145g01210 Petunia axillaris HOM05D004884 ORTHO05D005873 9.6e-47 190.7 117 71.8
Pp3c18_11860 Physcomitrium patens HOM05D004884 ORTHO05D005873 6.2e-46 188.0 130 64.6
AagrBONN_evm.TU.Sc2ySwM_368.2705 Anthoceros agrestis HOM05D004884 ORTHO05D005873 9.9e-44 180.6 132 63.6
QL05p029040 Quercus lobata HOM05D004884 ORTHO05D005873 3.8e-43 178.7 130 68.5
Mapoly0005s0226 Marchantia polymorpha HOM05D004884 ORTHO05D005873 4.9e-43 178.3 130 58.5
CDE06G1547 Ceratophyllum demersum HOM05D004884 ORTHO05D005873 5.1e-40 168.3 105 73.3
Sopen11g004140 Solanum pennellii HOM05D004884 ORTHO05D005873 5.6e-39 164.9 104 72.1
Gorai.001G184900 Gossypium raimondii HOM05D004884 ORTHO05D005873 4.8e-38 161.8 100 76.0
Nitab4.5_0005235g0010 Nicotiana tabacum HOM05D004884 ORTHO05D005873 1.1e-37 160.6 119 63.9
Gohir.D07G161600 Gossypium hirsutum HOM05D004884 ORTHO05D005873 6.9e-37 157.9 100 75.0
BcaC07g41508 Brassica carinata HOM05D004884 ORTHO05D005873 1.9e-34 149.8 116 68.1
CBR_g8585 Chara braunii HOM05D004884 ORTHO05D005873 1.0e-32 144.1 130 52.3
Gohir.D13G076450 Gossypium hirsutum HOM05D004884 ORTHO05D005873 1.0e-32 144.1 82 80.5
Gorai.013G087100 Gossypium raimondii HOM05D004884 ORTHO05D005873 1.9e-31 139.8 87 77.0
Oeu024660.1 Olea europaea HOM05D004884 ORTHO05D005873 7.6e-28 127.9 69 88.4
Nitab4.5_0001450g0150 Nicotiana tabacum HOM05D004884 ORTHO05D005873 6.1e-25 118.2 86 64.0
Haze_21525 Corylus avellana HOM05D004884 ORTHO05D005873 1.8e-24 116.7 64 81.2
Nitab4.5_0000620g0040 Nicotiana tabacum HOM05D004884 ORTHO05D005873 3.7e-22 109.0 65 81.5
Gohir.A06G098210 Gossypium hirsutum HOM05D004884 ORTHO05D005873 5.0e-19 98.6 63 71.4
Gohir.A13G076901 Gossypium hirsutum HOM05D004884 ORTHO05D005873 1.6e-17 93.6 82 58.5
Gohir.D01G156500 Gossypium hirsutum HOM05D004884 ORTHO05D005873 4.7e-17 92.0 53 81.1
Cre12.g561200 Chlamydomonas reinhardtii HOM05D004884 ORTHO05D005873 1.1e-15 87.4 106 39.6
DCAR_015322 Daucus carota HOM05D004884 ORTHO05D005873 1.5e-15 87.0 45 86.7
MCO11G456 Micromonas commoda HOM05D004884 ORTHO05D005873 3.1e-13 79.3 151 32.5
Nn8g39461 Nelumbo nucifera HOM05D004884 ORTHO05D005873 9.1e-13 77.8 50 72.0
Hund04518 Selenicereus undatus HOM05D004884 ORTHO05D005873 1.2e-12 77.4 47 74.5
PRCOL_00001860 Prasinoderma coloniale HOM05D004884 ORTHO05D005873 3.4e-12 75.9 129 32.6
CAN.G185.10 Capsicum annuum HOM05D004884 ORTHO05D005873 1.0e-08 64.3 85 45.9
TPR.G29435 Trifolium pratense HOM05D004884 ORTHO05D005873 1.8e-08 63.5 33 84.8


User provided reference genes

Program Settings