Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG4G4200 Aethionema arabicum HOM05D005829 ORTHO05D007246 1.3e-117 426.4 214 100.0
AL2G33720 Arabidopsis lyrata HOM05D005829 ORTHO05D007246 7.9e-83 310.8 214 74.8
Carub.0002s2066 Capsella rubella HOM05D005829 ORTHO05D007246 2.2e-80 302.8 216 72.7
Sp5g29090 Schrenkiella parvula HOM05D005829 ORTHO05D007246 6.3e-80 301.2 214 74.3
CARHR067000 Cardamine hirsuta HOM05D005829 ORTHO05D007246 3.1e-79 298.9 217 73.3
BcaB03g15734 Brassica carinata HOM05D005829 ORTHO05D007246 8.8e-74 280.8 215 71.2
BcaC03g15467 Brassica carinata HOM05D005829 ORTHO05D007246 3.7e-72 275.4 214 69.6
C02p31470 Brassica napus HOM05D005829 ORTHO05D007246 3.7e-72 275.4 214 69.6
BolC2t09178H Brassica oleracea HOM05D005829 ORTHO05D007246 3.7e-72 275.4 214 69.6
BcaC08g45615 Brassica carinata HOM05D005829 ORTHO05D007246 4.8e-72 275.0 214 67.8
Thhalv10019131m.g Eutrema salsugineum HOM05D005829 ORTHO05D007246 4.8e-72 275.0 215 69.8
BraA02t06935Z Brassica rapa HOM05D005829 ORTHO05D007246 2.0e-70 269.6 214 68.2
A02p18930 Brassica napus HOM05D005829 ORTHO05D007246 5.9e-70 268.1 214 67.3
BcaB05g24816 Brassica carinata HOM05D005829 ORTHO05D007246 1.0e-69 267.3 215 66.5
BcaB05g24818 Brassica carinata HOM05D005829 ORTHO05D007246 1.0e-69 267.3 215 66.5
BolC6t38490H Brassica oleracea HOM05D005829 ORTHO05D007246 8.8e-66 254.2 214 65.0
C06p33760 Brassica napus HOM05D005829 ORTHO05D007246 1.5e-65 253.4 214 65.0
A07p29590 Brassica napus HOM05D005829 ORTHO05D007246 1.8e-63 246.5 214 62.6
AT1G73885 Arabidopsis thaliana HOM05D005829 ORTHO05D007246 4.1e-63 245.4 212 62.3
THA.LOC104813901 Tarenaya hassleriana HOM05D005829 ORTHO05D007246 9.1e-63 244.2 214 65.9
BraA07t30600Z Brassica rapa HOM05D005829 ORTHO05D007246 5.9e-62 241.5 214 62.6
BcaC03g15466 Brassica carinata HOM05D005829 ORTHO05D007246 4.5e-54 215.3 214 59.3
Cpa.g.sc13.3 Carica papaya HOM05D005829 ORTHO05D007246 7.0e-47 191.4 216 55.6
Gohir.A09G177500 Gossypium hirsutum HOM05D005829 ORTHO05D007246 1.1e-44 184.1 224 54.5
Gohir.D09G173000 Gossypium hirsutum HOM05D005829 ORTHO05D007246 3.3e-44 182.6 224 54.0
Gorai.006G194900 Gossypium raimondii HOM05D005829 ORTHO05D007246 4.3e-44 182.2 224 54.0
Dinv36156 Davidia involucrata HOM05D005829 ORTHO05D007246 1.2e-43 180.6 221 52.9
Duzib084G1006 Durio zibethinus HOM05D005829 ORTHO05D007246 8.0e-43 177.9 209 54.5
Haze_18659 Corylus avellana HOM05D005829 ORTHO05D007246 1.0e-42 177.6 214 50.9
Cfa019789 Carpinus fangiana HOM05D005829 ORTHO05D007246 4.0e-42 175.6 215 51.6
Manes.01G012500 Manihot esculenta HOM05D005829 ORTHO05D007246 8.9e-42 174.5 215 52.1
Lsat_1_v5_gn_8_146520 Lactuca sativa HOM05D005829 ORTHO05D007246 1.5e-41 173.7 199 53.3
CiPaw.15G129500 Carya illinoinensis HOM05D005829 ORTHO05D007246 2.0e-41 173.3 219 50.2
Duzib068G0473 Durio zibethinus HOM05D005829 ORTHO05D007246 2.0e-41 173.3 214 54.2
Thecc.03G033800 Theobroma cacao HOM05D005829 ORTHO05D007246 2.0e-41 173.3 209 52.2
HanXRQChr10g0314971 Helianthus annuus HOM05D005829 ORTHO05D007246 5.7e-41 171.8 203 52.7
CSS0021100 Camellia sinensis var. sinensis HOM05D005829 ORTHO05D007246 2.9e-40 169.5 170 60.6
Manes.05G145805 Manihot esculenta HOM05D005829 ORTHO05D007246 3.7e-40 169.1 229 48.9
GSVIVG01008273001 Vitis vinifera HOM05D005829 ORTHO05D007246 1.1e-39 167.5 189 54.0
Oeu006380.1 Olea europaea HOM05D005829 ORTHO05D007246 1.8e-39 166.8 192 56.2
Ciclev10022208m.g Citrus clementina HOM05D005829 ORTHO05D007246 5.4e-39 165.2 228 49.6
QL10p025073 Quercus lobata HOM05D005829 ORTHO05D007246 9.2e-39 164.5 223 48.4
Potri.015G053800 Populus trichocarpa HOM05D005829 ORTHO05D007246 1.2e-38 164.1 224 46.0
Atru.chr9.821 Acer truncatum HOM05D005829 ORTHO05D007246 2.7e-38 162.9 226 47.3
Sabra15G0075500 Salix brachista HOM05D005829 ORTHO05D007246 3.5e-38 162.5 222 46.8
arahy.Tifrunner.gnm1.ann1.K96EGP Arachis hypogaea HOM05D005829 ORTHO05D007246 7.8e-38 161.4 222 49.5
CANSAT21G0600 Cannabis sativa HOM05D005829 ORTHO05D007246 3.0e-37 159.5 221 46.6
Cc04_g07210 Coffea canephora HOM05D005829 ORTHO05D007246 3.0e-37 159.5 191 56.0
Oeu046995.1 Olea europaea HOM05D005829 ORTHO05D007246 1.1e-36 157.5 193 50.8
ECA234G2972 Erigeron canadensis HOM05D005829 ORTHO05D007246 1.5e-36 157.1 221 49.3
TAR629G3023 Trochodendron aralioides HOM05D005829 ORTHO05D007246 1.5e-36 157.1 179 55.9
PGR083G1885 Punica granatum HOM05D005829 ORTHO05D007246 2.5e-36 156.4 225 46.7
MSTRG.11323 Avicennia marina HOM05D005829 ORTHO05D007246 3.3e-36 156.0 215 48.4
Sc12g0006790 Simmondsia chinensis HOM05D005829 ORTHO05D007246 3.3e-36 156.0 211 47.4
ClCG06G014890 Citrullus lanatus HOM05D005829 ORTHO05D007246 7.3e-36 154.8 218 45.9
Hund02393 Selenicereus undatus HOM05D005829 ORTHO05D007246 7.3e-36 154.8 214 47.2
EL10Ac5g11432 Beta vulgaris HOM05D005829 ORTHO05D007246 9.5e-36 154.5 225 44.9
FAN13G0492 Fragaria x ananassa HOM05D005829 ORTHO05D007246 2.1e-35 153.3 217 46.1
FAN04G2288 Fragaria x ananassa HOM05D005829 ORTHO05D007246 4.7e-35 152.1 217 46.1
Eucgr.K02215 Eucalyptus grandis HOM05D005829 ORTHO05D007246 6.2e-35 151.8 184 51.6
FAN08G3097 Fragaria x ananassa HOM05D005829 ORTHO05D007246 6.2e-35 151.8 217 45.6
Peaxi162Scf00013g00945 Petunia axillaris HOM05D005829 ORTHO05D007246 6.2e-35 151.8 211 49.3
Migut.I00369 Erythranthe guttata HOM05D005829 ORTHO05D007246 8.0e-35 151.4 223 47.5
Prupe.5G220500 Prunus persica HOM05D005829 ORTHO05D007246 8.0e-35 151.4 219 47.9
MD14G1226000 Malus domestica HOM05D005829 ORTHO05D007246 1.0e-34 151.0 220 45.9
MD06G1215200 Malus domestica HOM05D005829 ORTHO05D007246 2.3e-34 149.8 220 47.7
Actinidia06971 Actinidia chinensis HOM05D005829 ORTHO05D007246 3.1e-34 149.4 215 47.4
MELO3C017300.2 Cucumis melo HOM05D005829 ORTHO05D007246 5.2e-34 148.7 220 47.3
FAN18G3094 Fragaria x ananassa HOM05D005829 ORTHO05D007246 8.9e-34 147.9 217 46.1
Nitab4.5_0010801g0020 Nicotiana tabacum HOM05D005829 ORTHO05D007246 2.6e-33 146.4 213 47.4
BcaC09g48855 Brassica carinata HOM05D005829 ORTHO05D007246 3.4e-33 146.0 98 77.6
C01p45190 Brassica napus HOM05D005829 ORTHO05D007246 3.4e-33 146.0 98 77.6
BolC1t04492H Brassica oleracea HOM05D005829 ORTHO05D007246 3.4e-33 146.0 98 77.6
Nitab4.5_0011561g0030 Nicotiana tabacum HOM05D005829 ORTHO05D007246 3.4e-33 146.0 213 47.4
Aqoxy3G00323 Aquilegia oxysepala HOM05D005829 ORTHO05D007246 4.4e-33 145.6 180 50.6
PSO478G3740 Papaver somniferum HOM05D005829 ORTHO05D007246 1.3e-32 144.1 219 45.2
arahy.Tifrunner.gnm1.ann1.SID7TX Arachis hypogaea HOM05D005829 ORTHO05D007246 1.7e-32 143.7 252 43.3
DCAR_023199 Daucus carota HOM05D005829 ORTHO05D007246 2.9e-32 142.9 194 50.5
RcHm_v2.0_Chr7g0185261 Rosa chinensis HOM05D005829 ORTHO05D007246 2.9e-32 142.9 217 45.2
TWI15G0782 Tripterygium wilfordii HOM05D005829 ORTHO05D007246 2.9e-32 142.9 217 46.1
Lalb_Chr14g0371231 Lupinus albus HOM05D005829 ORTHO05D007246 3.7e-32 142.5 212 44.8
Potri.015G054100 Populus trichocarpa HOM05D005829 ORTHO05D007246 3.7e-32 142.5 146 55.5
FvH4_5g12290 Fragaria vesca HOM05D005829 ORTHO05D007246 4.9e-32 142.1 217 45.2
FAN18G2130 Fragaria x ananassa HOM05D005829 ORTHO05D007246 4.9e-32 142.1 217 45.2
CsaV3_1G003750 Cucumis sativus L. HOM05D005829 ORTHO05D007246 8.3e-32 141.4 224 45.5
PSO017G1947 Papaver somniferum HOM05D005829 ORTHO05D007246 8.3e-32 141.4 216 44.4
PGSC0003DMG400004051 Solanum tuberosum HOM05D005829 ORTHO05D007246 8.3e-32 141.4 208 46.6
Sed0000228 Sechium edule HOM05D005829 ORTHO05D007246 1.4e-31 140.6 184 47.3
Solyc06g069170.4 Solanum lycopersicum HOM05D005829 ORTHO05D007246 4.1e-31 139.0 207 45.9
CAN.G423.7 Capsicum annuum HOM05D005829 ORTHO05D007246 7.0e-31 138.3 104 69.2
Sopen06g026440 Solanum pennellii HOM05D005829 ORTHO05D007246 1.2e-30 137.5 207 45.9
Ah.11g045030 Amaranthus hybridus HOM05D005829 ORTHO05D007246 2.7e-30 136.3 222 42.3
Rhsim13G0208500 Rhododendron simsii HOM05D005829 ORTHO05D007246 1.3e-29 134.0 249 40.2
ATR0665G268 Amborella trichopoda HOM05D005829 ORTHO05D007246 1.9e-28 130.2 169 47.9
unitig_749.g13417 Utricularia gibba HOM05D005829 ORTHO05D007246 1.9e-28 130.2 96 65.6
HPP92_013263 Vanilla planifolia HOM05D005829 ORTHO05D007246 7.3e-28 128.3 193 44.0
SGA_v2.0_scaffold25G10988 Striga asiatica HOM05D005829 ORTHO05D007246 9.5e-28 127.9 259 37.8
vmacro04041 Vaccinium macrocarpon HOM05D005829 ORTHO05D007246 4.7e-27 125.6 265 38.5
HPP92_013214 Vanilla planifolia HOM05D005829 ORTHO05D007246 4.7e-27 125.6 199 43.7
CDE05G0659 Ceratophyllum demersum HOM05D005829 ORTHO05D007246 8.1e-27 124.8 182 44.0
SEGI_06072 Sequoiadendron giganteum HOM05D005829 ORTHO05D007246 2.3e-26 123.2 124 51.6
Lj2g0004175 Lotus japonicus HOM05D005829 ORTHO05D007246 4.0e-26 122.5 219 37.9
Nn1g06955 Nelumbo nucifera HOM05D005829 ORTHO05D007246 4.0e-26 122.5 204 41.2
CDE11G0392 Ceratophyllum demersum HOM05D005829 ORTHO05D007246 7.5e-25 118.2 160 45.0
Os03g0710600 Oryza sativa ssp. japonica HOM05D005829 ORTHO05D007246 1.3e-24 117.5 179 41.9
TPR.G35237 Trifolium pratense HOM05D005829 ORTHO05D007246 1.1e-23 114.4 119 50.4
Gohir.A08G094610 Gossypium hirsutum HOM05D005829 ORTHO05D007246 1.9e-23 113.6 204 43.6
Ca_25501_v3 Cicer arietinum L. HOM05D005829 ORTHO05D007246 9.2e-23 111.3 213 35.7
Zm00001eb054790 Zea mays HOM05D005829 ORTHO05D007246 1.2e-22 110.9 154 46.8
THA.LOC104813291 Tarenaya hassleriana HOM05D005829 ORTHO05D007246 2.1e-22 110.2 73 82.2
Zm00001eb216440 Zea mays HOM05D005829 ORTHO05D007246 2.1e-22 110.2 154 44.8
Medtr6g084620 Medicago truncatula HOM05D005829 ORTHO05D007246 3.0e-21 106.3 216 38.9
Ca_00264_v3 Cicer arietinum L. HOM05D005829 ORTHO05D007246 4.3e-20 102.4 206 34.5
AagrBONN_evm.TU.Sc2ySwM_228.1174 Anthoceros agrestis HOM05D005829 ORTHO05D007246 1.2e-19 100.9 99 54.5
AagrBONN_evm.TU.Sc2ySwM_228.2224 Anthoceros agrestis HOM05D005829 ORTHO05D007246 4.7e-19 99.0 99 53.5
FAN14G0369 Fragaria x ananassa HOM05D005829 ORTHO05D007246 1.8e-18 97.1 65 67.7
Mapoly0028s0124 Marchantia polymorpha HOM05D005829 ORTHO05D007246 3.8e-16 89.4 91 47.3
AUR62029856 Chenopodium quinoa HOM05D005829 ORTHO05D007246 2.7e-14 83.2 59 72.9
AUR62025855 Chenopodium quinoa HOM05D005829 ORTHO05D007246 4.6e-14 82.4 78 57.7
COL.COLO4_04672 Corchorus olitorius HOM05D005829 ORTHO05D007246 4.6e-14 82.4 161 36.6
Nn3g17806 Nelumbo nucifera HOM05D005829 ORTHO05D007246 6.0e-14 82.0 160 36.2
Pp3c4_12650 Physcomitrium patens HOM05D005829 ORTHO05D007246 8.6e-13 78.2 87 49.4
Pp3c4_12780 Physcomitrium patens HOM05D005829 ORTHO05D007246 8.6e-13 78.2 87 49.4
BolC2t09172H Brassica oleracea HOM05D000194 ORTHO05D007246 9.6e-12 74.7 59 74.6
BcaC03g15457 Brassica carinata HOM05D000194 ORTHO05D000069 2.8e-11 73.2 59 72.9
SMO241G0040 Selaginella moellendorffii HOM05D005829 ORTHO05D007246 7.6e-09 65.1 193 33.2
Actinidia24460 Actinidia chinensis HOM05D005829 ORTHO05D007246 6.4e-08 62.0 40 62.5
SMO232G0029 Selaginella moellendorffii HOM05D005829 ORTHO05D007246 9.3e-07 58.2 90 41.1
CBR_g29305 Chara braunii HOM05D005829 ORTHO05D007246 7.8e-06 55.1 34 70.6


User provided reference genes

Program Settings