Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG4G3650 Aethionema arabicum HOM05D006388 ORTHO05D008026 1.5e-248 862.4 441 100.0
AT1G73380 Arabidopsis thaliana HOM05D006388 ORTHO05D008026 4.6e-194 681.4 448 79.0
Thhalv10018586m.g Eutrema salsugineum HOM05D006388 ORTHO05D008026 1.5e-192 676.4 444 78.6
Sp5g28310 Schrenkiella parvula HOM05D006388 ORTHO05D008026 1.9e-192 676.0 441 79.4
CARHR066430 Cardamine hirsuta HOM05D006388 ORTHO05D008026 9.6e-192 673.7 445 78.4
AL2G33160 Arabidopsis lyrata HOM05D006388 ORTHO05D008026 8.1e-191 670.6 447 79.2
Carub.0002s2012 Capsella rubella HOM05D006388 ORTHO05D008026 1.3e-188 663.3 443 78.3
BraA02t06912Z Brassica rapa HOM05D006388 ORTHO05D008026 4.6e-178 628.2 444 76.1
C02p31040 Brassica napus HOM05D006388 ORTHO05D008026 3.9e-177 625.2 443 74.7
BolC2t09150H Brassica oleracea HOM05D006388 ORTHO05D008026 1.2e-173 613.6 443 73.6
A02p18710 Brassica napus HOM05D006388 ORTHO05D008026 2.0e-173 612.8 445 73.9
THA.LOC104813931 Tarenaya hassleriana HOM05D006388 ORTHO05D008026 1.7e-164 583.2 442 68.8
Atru.chr6.990 Acer truncatum HOM05D006388 ORTHO05D008026 9.4e-131 471.1 451 57.4
Potri.004G067200 Populus trichocarpa HOM05D006388 ORTHO05D008026 9.8e-128 461.1 475 54.1
Cfa017806 Carpinus fangiana HOM05D006388 ORTHO05D008026 1.4e-126 457.2 472 56.6
COL.COLO4_30052 Corchorus olitorius HOM05D006388 ORTHO05D008026 1.7e-124 450.3 459 54.2
Prupe.5G245000 Prunus persica HOM05D006388 ORTHO05D008026 8.6e-124 448.0 487 53.8
TWI15G1133 Tripterygium wilfordii HOM05D006388 ORTHO05D008026 1.1e-123 447.6 458 54.6
Thecc.05G197200 Theobroma cacao HOM05D006388 ORTHO05D008026 1.5e-123 447.2 463 54.2
CiPaw.15G107500 Carya illinoinensis HOM05D006388 ORTHO05D008026 1.9e-123 446.8 468 55.6
Gohir.D08G245800 Gossypium hirsutum HOM05D006388 ORTHO05D008026 4.2e-123 445.7 465 53.1
Lalb_Chr03g0034281 Lupinus albus HOM05D006388 ORTHO05D008026 4.2e-123 445.7 508 51.2
Gohir.A08G225400 Gossypium hirsutum HOM05D006388 ORTHO05D008026 1.2e-122 444.1 465 52.9
Glyma.16G210900 Glycine max HOM05D006388 ORTHO05D008026 1.6e-122 443.7 510 51.6
TAR622G0711 Trochodendron aralioides HOM05D006388 ORTHO05D008026 1.6e-122 443.7 463 53.3
Duzib128G0602 Durio zibethinus HOM05D006388 ORTHO05D008026 4.7e-122 442.2 464 52.2
Sabra04G0045000 Salix brachista HOM05D006388 ORTHO05D008026 6.1e-122 441.8 505 50.1
Gorai.004G262300 Gossypium raimondii HOM05D006388 ORTHO05D008026 8.0e-122 441.4 465 52.7
Dinv03508 Davidia involucrata HOM05D006388 ORTHO05D008026 2.3e-121 439.9 473 52.0
Eucgr.K02329 Eucalyptus grandis HOM05D006388 ORTHO05D008026 2.3e-121 439.9 470 53.2
Cpa.g.sc168.3 Carica papaya HOM05D006388 ORTHO05D008026 5.2e-121 438.7 441 55.1
Lj2g0005711 Lotus japonicus HOM05D006388 ORTHO05D008026 6.8e-121 438.3 506 49.6
ClCG10G003610 Citrullus lanatus HOM05D006388 ORTHO05D008026 1.5e-120 437.2 462 54.1
RcHm_v2.0_Chr7g0176951 Rosa chinensis HOM05D006388 ORTHO05D008026 3.4e-120 436.0 459 54.7
Psat1g118840 Pisum sativum HOM05D006388 ORTHO05D008026 4.4e-120 435.6 507 49.3
MD14G1246700 Malus domestica HOM05D006388 ORTHO05D008026 9.8e-120 434.5 489 53.2
FAN13G2679 Fragaria x ananassa HOM05D006388 ORTHO05D008026 1.7e-119 433.7 455 54.7
Phvul.004G137100 Phaseolus vulgaris HOM05D006388 ORTHO05D008026 2.8e-119 433.0 472 52.3
VMungo0464G0944 Vigna mungo HOM05D006388 ORTHO05D008026 4.1e-118 429.1 504 49.6
CsaV3_3G003610 Cucumis sativus L. HOM05D006388 ORTHO05D008026 5.4e-118 428.7 463 52.9
Medtr6g068920 Medicago truncatula HOM05D006388 ORTHO05D008026 5.4e-118 428.7 509 49.9
MELO3C014032.2 Cucumis melo HOM05D006388 ORTHO05D008026 1.6e-117 427.2 463 53.1
FAN18G2055 Fragaria x ananassa HOM05D006388 ORTHO05D008026 3.5e-117 426.0 459 53.4
FvH4_5g18560 Fragaria vesca HOM05D006388 ORTHO05D008026 4.5e-117 425.6 459 53.4
TPR.G31361 Trifolium pratense HOM05D006388 ORTHO05D008026 5.9e-117 425.2 504 50.0
FAN08G3112 Fragaria x ananassa HOM05D006388 ORTHO05D008026 7.8e-117 424.9 455 54.1
Sed0000986 Sechium edule HOM05D006388 ORTHO05D008026 1.7e-116 423.7 462 51.3
arahy.Tifrunner.gnm1.ann1.586MWM Arachis hypogaea HOM05D006388 ORTHO05D008026 2.3e-116 423.3 503 50.1
Haze_18407 Corylus avellana HOM05D006388 ORTHO05D008026 8.6e-116 421.4 468 53.4
CANSAT80G2370 Cannabis sativa HOM05D006388 ORTHO05D008026 1.1e-115 421.0 455 54.5
PSO063G3611 Papaver somniferum HOM05D006388 ORTHO05D008026 2.5e-115 419.9 467 49.7
arahy.Tifrunner.gnm1.ann1.V0741V Arachis hypogaea HOM05D006388 ORTHO05D008026 3.3e-115 419.5 503 49.7
MBI03_g13439_MAGBIO Magnolia biondii HOM05D006388 ORTHO05D008026 1.2e-114 417.5 461 51.8
PGR044G0861 Punica granatum HOM05D006388 ORTHO05D008026 2.1e-114 416.8 473 52.4
Manes.02G226400 Manihot esculenta HOM05D006388 ORTHO05D008026 8.0e-114 414.8 458 52.4
Ca_25279_v3 Cicer arietinum L. HOM05D006388 ORTHO05D008026 3.7e-111 406.0 486 49.0
Lj5A168G91 Lonicera japonica HOM05D006388 ORTHO05D008026 3.2e-110 402.9 501 47.9
Nn4g26682 Nelumbo nucifera HOM05D006388 ORTHO05D008026 9.2e-110 401.4 455 51.2
ECA236G2607 Erigeron canadensis HOM05D006388 ORTHO05D008026 1.3e-108 397.5 454 50.2
ClCG00G000350 Citrullus lanatus HOM05D006388 ORTHO05D008026 8.6e-108 394.8 483 48.7
CDE04G0152 Ceratophyllum demersum HOM05D006388 ORTHO05D008026 6.8e-105 385.2 468 45.7
Sc10g0008630 Simmondsia chinensis HOM05D006388 ORTHO05D008026 1.2e-104 384.4 458 47.4
Lsat_1_v5_gn_8_64640 Lactuca sativa HOM05D006388 ORTHO05D008026 4.4e-104 382.5 450 48.2
Nitab4.5_0001495g0050 Nicotiana tabacum HOM05D006388 ORTHO05D008026 1.3e-103 380.9 460 49.8
HanXRQChr05g0141681 Helianthus annuus HOM05D006388 ORTHO05D008026 5.4e-102 375.6 446 47.8
Nitab4.5_0007717g0060 Nicotiana tabacum HOM05D006388 ORTHO05D008026 7.1e-102 375.2 461 48.4
ATR0124G024 Amborella trichopoda HOM05D006388 ORTHO05D008026 2.7e-101 373.2 488 45.1
Cc00_g12620 Coffea canephora HOM05D006388 ORTHO05D008026 6.0e-101 372.1 479 47.0
Aqoxy3G04328 Aquilegia oxysepala HOM05D006388 ORTHO05D008026 1.1e-99 367.9 461 46.9
EL10Ac8g19473 Beta vulgaris HOM05D006388 ORTHO05D008026 1.1e-99 367.9 476 45.2
DCAR_014753 Daucus carota HOM05D001996 ORTHO05D002072 1.5e-99 367.5 408 50.7
Ah.14g085810 Amaranthus hybridus HOM05D006388 ORTHO05D008026 1.2e-98 364.4 473 46.1
CAN.G861.30 Capsicum annuum HOM05D006388 ORTHO05D008026 1.1e-97 361.3 457 46.8
SalBow5G5586 Salvia bowleyana HOM05D006388 ORTHO05D008026 4.0e-97 359.4 463 47.3
PGSC0003DMG400015280 Solanum tuberosum HOM05D006388 ORTHO05D008026 6.8e-97 358.6 464 47.2
Sopen03g029690 Solanum pennellii HOM05D006388 ORTHO05D008026 1.5e-96 357.5 470 46.8
Ciclev10020647m.g Citrus clementina HOM05D006388 ORTHO05D008026 1.1e-94 351.3 382 52.1
SGA_v2.0_scaffold25G10731 Striga asiatica HOM05D006388 ORTHO05D008026 1.9e-94 350.5 470 46.0
AUR62040788 Chenopodium quinoa HOM05D006388 ORTHO05D008026 5.4e-94 349.0 410 48.8
Rhsim08G0125300 Rhododendron simsii HOM05D006388 ORTHO05D008026 5.4e-94 349.0 521 43.8
TPR.G3132 Trifolium pratense HOM05D006388 ORTHO05D008026 7.1e-94 348.6 426 48.1
Oeu063709.3 Olea europaea HOM05D006388 ORTHO05D008026 2.7e-93 346.7 467 46.3
GSVIVG01024248001 Vitis vinifera HOM05D006388 ORTHO05D008026 3.4e-88 329.7 436 48.6
QL10p033727 Quercus lobata HOM05D006388 ORTHO05D008026 6.4e-87 325.5 394 49.0
HPP92_007318 Vanilla planifolia HOM05D006388 ORTHO05D008026 1.2e-85 321.2 448 44.9
Solyc03g019930.4 Solanum lycopersicum HOM05D006388 ORTHO05D008026 2.1e-77 293.9 446 41.9
Migut.O00278 Erythranthe guttata HOM05D006388 ORTHO05D008026 8.1e-74 282.0 438 41.8
SEGI_28863 Sequoiadendron giganteum HOM05D006388 ORTHO05D008026 9.0e-73 278.5 459 39.4
Hund22363 Selenicereus undatus HOM05D006388 ORTHO05D008026 9.9e-72 275.0 400 42.5
unitig_749.g14324 Utricularia gibba HOM05D006388 ORTHO05D008026 1.7e-71 274.2 445 42.2
ClCG00G006010 Citrullus lanatus HOM05D006388 ORTHO05D008026 4.9e-71 272.7 337 49.0
vmacro17751 Vaccinium macrocarpon HOM05D006388 ORTHO05D008026 1.4e-70 271.2 378 46.0
Zm00001eb068340 Zea mays HOM05D006388 ORTHO05D008026 3.2e-70 270.0 440 40.7
Actinidia34678 Actinidia chinensis HOM05D006388 ORTHO05D008026 6.9e-65 252.3 337 47.2
Duzib128G0966 Durio zibethinus HOM05D006388 ORTHO05D008026 2.6e-64 250.4 193 64.8
Os10g0489800 Oryza sativa ssp. japonica HOM05D006388 ORTHO05D008026 2.7e-61 240.4 314 45.5
AagrBONN_evm.TU.Sc2ySwM_344.3994 Anthoceros agrestis HOM05D006388 ORTHO05D008026 3.4e-56 223.4 544 32.0
Glyma.09G161700 Glycine max HOM05D006388 ORTHO05D008026 1.7e-55 221.1 184 60.3
Peaxi162Scf00171g00011 Petunia axillaris HOM05D006388 ORTHO05D008026 8.4e-55 218.8 170 63.5
Mapoly0114s0003 Marchantia polymorpha HOM05D006388 ORTHO05D008026 1.1e-54 218.4 506 31.0
Duzib128G1156 Durio zibethinus HOM05D006388 ORTHO05D008026 1.3e-52 211.5 243 49.8
Gohir.A08G079000 Gossypium hirsutum HOM05D006388 ORTHO05D008026 3.3e-51 206.8 283 43.5
TPR.G27930 Trifolium pratense HOM05D006388 ORTHO05D008026 9.7e-51 205.3 200 55.5
SMO169G0166 Selaginella moellendorffii HOM05D006388 ORTHO05D008026 4.8e-50 203.0 468 33.3
FAN04G1542 Fragaria x ananassa HOM05D006388 ORTHO05D008026 1.1e-46 191.8 210 53.3
Pp3c1_7520 Physcomitrium patens HOM05D006388 ORTHO05D008026 1.9e-46 191.0 503 29.0
CSS0002556 Camellia sinensis var. sinensis HOM05D006388 ORTHO05D008026 9.7e-43 178.7 123 70.7
AUR62038569 Chenopodium quinoa HOM05D006388 ORTHO05D008026 4.8e-42 176.4 267 42.3
ClCG00G000360 Citrullus lanatus HOM05D006388 ORTHO05D008026 3.6e-37 160.2 123 66.7
CBR_g36351 Chara braunii HOM05D006388 ORTHO05D008026 1.8e-33 147.9 205 42.0
Glyma.09G161751 Glycine max HOM05D006388 ORTHO05D008026 2.7e-24 117.5 152 49.3
TPR.G16379 Trifolium pratense HOM05D006388 ORTHO05D008026 1.6e-21 108.2 101 55.4
vmacro17752 Vaccinium macrocarpon HOM05D006388 ORTHO05D008026 4.7e-21 106.7 83 65.1
TPR.G31360 Trifolium pratense HOM05D006388 ORTHO05D008026 4.0e-20 103.6 69 72.5
PGR044G2638 Punica granatum HOM05D006388 ORTHO05D008026 1.4e-12 78.6 89 52.8
Actinidia34679 Actinidia chinensis HOM05D006388 ORTHO05D008026 3.0e-12 77.4 45 77.8
MapolyY_B0043 Marchantia polymorpha HOM05D006388 ORTHO05D008026 4.0e-12 77.0 144 33.3
Hma1.2p1_0800F.1_g220210 Hydrangea macrophylla HOM05D006388 ORTHO05D008026 1.4e-09 68.6 52 63.5
Cre02.g083400 Chlamydomonas reinhardtii HOM05D006388 ORTHO05D008026 1.2e-08 65.5 171 31.0
TPR.G46 Trifolium pratense HOM05D006388 ORTHO05D008026 1.6e-08 65.1 79 45.6


User provided reference genes

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