Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG4G360 Aethionema arabicum HOM05D007391 ORTHO05D009446 6.0e-190 667.9 500 100.0
Thhalv10019584m.g Eutrema salsugineum HOM05D007391 ORTHO05D009446 4.3e-140 502.3 498 81.7
CARHR074420 Cardamine hirsuta HOM05D007391 ORTHO05D009446 1.0e-133 481.1 491 78.4
Sp5g35720 Schrenkiella parvula HOM05D007391 ORTHO05D009446 1.1e-130 471.1 490 78.2
BolC6t38059H Brassica oleracea HOM05D007391 ORTHO05D009446 6.5e-128 461.8 500 76.2
BcaC08g45291 Brassica carinata HOM05D007391 ORTHO05D009446 1.4e-127 460.7 500 76.0
AL2G41460 Arabidopsis lyrata HOM05D007391 ORTHO05D009446 4.2e-127 459.1 489 78.5
C06p28930 Brassica napus HOM05D007391 ORTHO05D009446 5.5e-127 458.8 500 75.8
A07p26510 Brassica napus HOM05D007391 ORTHO05D009446 1.2e-126 457.6 502 75.5
BraA07t30294Z Brassica rapa HOM05D007391 ORTHO05D009446 1.6e-126 457.2 500 75.6
BcaB02g07296 Brassica carinata HOM05D007391 ORTHO05D009446 1.0e-125 454.5 493 77.3
AT1G80080 Arabidopsis thaliana HOM05D007391 ORTHO05D009446 4.4e-124 449.1 499 76.4
THA.LOC104812512 Tarenaya hassleriana HOM05D007391 ORTHO05D009446 2.2e-104 383.6 468 73.3
Potri.001G202100 Populus trichocarpa HOM05D007391 ORTHO05D009446 3.1e-85 320.1 464 67.5
Ciclev10025464m.g Citrus clementina HOM05D007391 ORTHO05D009446 5.2e-85 319.3 443 70.4
CANSAT56G1818 Cannabis sativa HOM05D007391 ORTHO05D009446 3.4e-84 316.6 465 64.7
Sabra01G0159600 Salix brachista HOM05D007391 ORTHO05D009446 1.3e-83 314.7 465 67.1
TWI12G0860 Tripterygium wilfordii HOM05D007391 ORTHO05D009446 2.2e-83 313.9 447 67.1
Lj5C73G6 Lonicera japonica HOM05D007391 ORTHO05D009446 4.9e-83 312.8 462 65.8
PGR031G3861 Punica granatum HOM05D007391 ORTHO05D009446 9.2e-82 308.5 475 62.9
Haze_16564 Corylus avellana HOM05D007391 ORTHO05D009446 1.3e-80 304.7 457 66.5
Prupe.3G087800 Prunus persica HOM05D007391 ORTHO05D009446 2.3e-80 303.9 420 65.7
DCAR_016270 Daucus carota HOM05D007391 ORTHO05D009446 3.0e-80 303.5 459 66.9
SGA_v2.0_scaffold117G32353 Striga asiatica HOM05D007391 ORTHO05D009446 3.9e-80 303.1 481 66.9
Nn8g39512 Nelumbo nucifera HOM05D007391 ORTHO05D009446 8.1e-78 295.4 483 58.6
Cfa001957 Carpinus fangiana HOM05D007391 ORTHO05D001615 3.1e-77 293.5 427 68.6
Thecc.06G025300 Theobroma cacao HOM05D007391 ORTHO05D009446 1.2e-76 291.6 483 57.8
Dinv38125 Davidia involucrata HOM05D007391 ORTHO05D009446 5.8e-76 289.3 448 50.0
Glyma.13G365900 Glycine max HOM05D007391 ORTHO05D009446 1.3e-75 288.1 494 61.5
CAN.G12.8 Capsicum annuum HOM05D007391 ORTHO05D009446 3.7e-75 286.6 454 63.2
Cpa.g.sc390.6 Carica papaya HOM05D007391 ORTHO05D009446 3.7e-75 286.6 425 67.8
PGSC0003DMG400028627 Solanum tuberosum HOM05D007391 ORTHO05D009446 1.4e-74 284.6 425 67.1
CsaV3_4G001720 Cucumis sativus L. HOM05D007391 ORTHO05D009446 1.9e-74 284.3 438 66.7
MELO3C017862.2 Cucumis melo HOM05D007391 ORTHO05D009446 2.4e-74 283.9 426 70.0
Gohir.A05G123000 Gossypium hirsutum HOM05D007391 ORTHO05D009446 2.4e-74 283.9 487 60.0
VMungo1080G1749 Vigna mungo HOM05D007391 ORTHO05D009446 3.2e-74 283.5 438 63.0
Lalb_Chr14g0373831 Lupinus albus HOM05D007391 ORTHO05D009446 7.1e-74 282.3 491 61.7
FvH4_6g29640 Fragaria vesca HOM05D007391 ORTHO05D009446 1.2e-73 281.6 445 65.2
Phvul.005G178400 Phaseolus vulgaris HOM05D007391 ORTHO05D009446 1.2e-73 281.6 450 64.4
Cc08_g02940 Coffea canephora HOM05D007391 ORTHO05D009446 3.5e-73 280.0 462 64.3
Peaxi162Scf00034g00145 Petunia axillaris HOM05D007391 ORTHO05D009446 3.5e-73 280.0 480 61.7
Gorai.009G127900 Gossypium raimondii HOM05D007391 ORTHO05D009446 4.6e-73 279.6 486 57.4
Gohir.D05G123900 Gossypium hirsutum HOM05D007391 ORTHO05D009446 6.0e-73 279.3 486 57.4
CSS0028859 Camellia sinensis var. sinensis HOM05D007391 ORTHO05D009446 5.1e-72 276.2 463 63.3
Sed0009683 Sechium edule HOM05D007391 ORTHO05D009446 5.1e-72 276.2 492 59.1
CSS0027290 Camellia sinensis var. sinensis HOM05D007391 ORTHO05D009446 6.6e-72 275.8 463 63.5
FAN02G3910 Fragaria x ananassa HOM05D007391 ORTHO05D009446 6.6e-72 275.8 445 63.1
Duzib235G1403 Durio zibethinus HOM05D007391 ORTHO05D009446 8.6e-72 275.4 178 73.6
Rhsim08G0212800 Rhododendron simsii HOM05D007391 ORTHO05D009446 8.6e-72 275.4 451 62.5
Lsat_1_v5_gn_1_34341 Lactuca sativa HOM05D007391 ORTHO05D009446 5.6e-71 272.7 425 60.9
Nitab4.5_0003157g0010 Nicotiana tabacum HOM05D007391 ORTHO05D009446 7.3e-71 272.3 425 66.8
Migut.D01079 Erythranthe guttata HOM05D007391 ORTHO05D009446 1.2e-70 271.6 451 63.4
Nitab4.5_0009497g0020 Nicotiana tabacum HOM05D007391 ORTHO05D009446 2.8e-70 270.4 468 62.4
COL.COLO4_11942 Corchorus olitorius HOM05D007391 ORTHO05D009446 3.6e-70 270.0 188 69.1
Ah.01g006570 Amaranthus hybridus HOM05D007391 ORTHO05D009446 1.1e-69 268.5 434 64.1
arahy.Tifrunner.gnm1.ann1.9HLX1I Arachis hypogaea HOM05D007391 ORTHO05D009446 1.4e-69 268.1 435 64.1
arahy.Tifrunner.gnm1.ann1.QTUK9J Arachis hypogaea HOM05D007391 ORTHO05D009446 1.4e-69 268.1 435 64.1
Lj3g0005617 Lotus japonicus HOM05D007391 ORTHO05D009446 1.4e-69 268.1 171 76.0
MD17G1212400 Malus domestica HOM05D007391 ORTHO05D009446 1.4e-69 268.1 184 70.7
FAN14G5578 Fragaria x ananassa HOM05D007391 ORTHO05D009446 3.1e-69 266.9 415 65.1
Hma1.2p1_0017F.1_g011310 Hydrangea macrophylla HOM05D007391 ORTHO05D009446 3.1e-69 266.9 424 59.2
AUR62016333 Chenopodium quinoa HOM05D007391 ORTHO05D001615 5.2e-69 266.2 445 60.4
PSO675G3521 Papaver somniferum HOM05D007391 ORTHO05D009446 5.2e-69 266.2 395 64.6
FAN09G3908 Fragaria x ananassa HOM05D007391 ORTHO05D009446 6.8e-69 265.8 415 66.3
PSO541G2895 Papaver somniferum HOM05D007391 ORTHO05D009446 6.8e-69 265.8 184 70.7
QL05p031418 Quercus lobata HOM05D007391 ORTHO05D009446 8.9e-69 265.4 188 67.6
Actinidia15759 Actinidia chinensis HOM05D007391 ORTHO05D009446 1.2e-68 265.0 168 73.8
HanXRQChr02g0033491 Helianthus annuus HOM05D007391 ORTHO05D009446 1.5e-68 264.6 174 73.0
vmacro18998 Vaccinium macrocarpon HOM05D007391 ORTHO05D009446 2.0e-68 264.2 472 61.7
AUR62011514 Chenopodium quinoa HOM05D007391 ORTHO05D009446 3.4e-68 263.5 445 60.0
RcHm_v2.0_Chr2g0135241 Rosa chinensis HOM05D007391 ORTHO05D009446 3.4e-68 263.5 178 70.8
Sopen12g021940 Solanum pennellii HOM05D007391 ORTHO05D009446 4.4e-68 263.1 425 64.5
CiPaw.01G248400 Carya illinoinensis HOM05D007391 ORTHO05D009446 5.8e-68 262.7 430 64.2
Aqoxy7G03657 Aquilegia oxysepala HOM05D007391 ORTHO05D009446 7.6e-68 262.3 484 56.8
ClCG00G004450 Citrullus lanatus HOM05D007391 ORTHO05D009446 6.4e-67 259.2 434 62.4
ClCG07G012440 Citrullus lanatus HOM05D007391 ORTHO05D009446 6.4e-67 259.2 434 62.4
ECA247G3329 Erigeron canadensis HOM05D000038 ORTHO05D003992 8.4e-67 258.8 155 76.1
Manes.11G057100 Manihot esculenta HOM05D007391 ORTHO05D009446 2.4e-66 257.3 449 65.5
Solyc12g042760.1 Solanum lycopersicum HOM05D007391 ORTHO05D009446 3.2e-66 256.9 464 61.2
Medtr2g103940 Medicago truncatula HOM05D007391 ORTHO05D009446 2.7e-65 253.8 498 57.2
CSS0006296 Camellia sinensis var. sinensis HOM05D007391 ORTHO05D009446 1.3e-64 251.5 463 62.0
SalBow6G6709 Salvia bowleyana HOM05D007391 ORTHO05D009446 1.1e-63 248.4 463 45.8
Psat5g302680 Pisum sativum HOM05D007391 ORTHO05D009446 2.5e-63 247.3 490 58.2
SalBow6G7005 Salvia bowleyana HOM05D007391 ORTHO05D009446 2.5e-63 247.3 463 45.8
Dinv30607 Davidia involucrata HOM05D007391 ORTHO05D009446 1.2e-62 245.0 416 64.4
TPR.G37292 Trifolium pratense HOM05D007391 ORTHO05D001615 1.1e-61 241.9 496 59.9
HPP92_023155 Vanilla planifolia HOM05D007391 ORTHO05D009446 2.9e-59 233.8 472 53.6
Ca_01054_v3 Cicer arietinum L. HOM05D000085 ORTHO05D001615 6.4e-59 232.6 169 69.2
Sc12g0008730 Simmondsia chinensis HOM05D007391 ORTHO05D009446 1.4e-58 231.5 166 68.7
Actinidia01743 Actinidia chinensis HOM05D007391 ORTHO05D009446 1.9e-58 231.1 464 44.6
ATR0724G054 Amborella trichopoda HOM05D007391 ORTHO05D009446 1.3e-56 224.9 481 60.5
FAN05G3463 Fragaria x ananassa HOM05D007391 ORTHO05D009446 1.7e-56 224.6 173 64.2
SHI08938 Sapria himalayana HOM05D007391 ORTHO05D009446 7.3e-55 219.2 179 59.8
Os01g0623000 Oryza sativa ssp. japonica HOM05D007391 ORTHO05D009446 1.6e-54 218.0 164 62.2
Eucgr.J03068 Eucalyptus grandis HOM05D007391 ORTHO05D009446 3.4e-52 210.3 464 51.3
Zm00001eb159500 Zea mays HOM05D007391 ORTHO05D009446 1.3e-51 208.4 164 60.4
CDE02G2129 Ceratophyllum demersum HOM05D007391 ORTHO05D009446 2.5e-47 194.1 148 62.2
SEGI_31210 Sequoiadendron giganteum HOM05D007391 ORTHO05D009446 5.6e-47 193.0 136 66.9
MSTRG.4707 Avicennia marina HOM05D007391 ORTHO05D009446 4.3e-39 166.8 355 63.7
SMO339G0042 Selaginella moellendorffii HOM05D007391 ORTHO05D009446 1.4e-37 161.8 138 57.2
AagrBONN_evm.TU.Sc2ySwM_344.5688 Anthoceros agrestis HOM05D007391 ORTHO05D009446 1.4e-34 151.8 122 59.0
Pp3c3_3780 Physcomitrium patens HOM05D007391 ORTHO05D009446 1.6e-33 148.3 138 55.1
Hma1.2p1_0355F.1_g133910 Hydrangea macrophylla HOM05D007391 ORTHO05D009446 1.8e-29 134.8 78 76.9
Migut.D01074 Erythranthe guttata HOM05D007391 ORTHO05D009446 2.0e-28 131.3 97 67.0
C02p37620 Brassica napus HOM05D043129 ORTHO05D009446 7.9e-25 119.4 227 37.9
SMO358G0434 Selaginella moellendorffii HOM05D006470 ORTHO05D007978 1.1e-18 99.0 136 41.2
AagrBONN_evm.TU.Sc2ySwM_344.1086 Anthoceros agrestis HOM05D007391 ORTHO05D004210 3.2e-18 97.4 150 38.0
ATR0681G334 Amborella trichopoda HOM05D006470 ORTHO05D007978 7.2e-18 96.3 139 38.8
BraA02t07376Z Brassica rapa HOM05D007391 ORTHO05D009446 3.6e-17 94.0 76 59.2
Gohir.A07G150300 Gossypium hirsutum HOM05D006470 ORTHO05D007978 1.1e-15 89.0 162 34.0
Gohir.D07G156600 Gossypium hirsutum HOM05D006470 ORTHO05D007978 2.5e-15 87.8 138 36.2
Gorai.001G179700 Gossypium raimondii HOM05D006470 ORTHO05D007978 2.5e-15 87.8 138 36.2
Lsat_1_v5_gn_5_182700 Lactuca sativa HOM05D006470 ORTHO05D007978 1.3e-14 85.5 148 32.4
TAR362G1291 Trochodendron aralioides HOM05D006470 ORTHO05D007978 1.3e-14 85.5 136 32.4
Duzib138G0951 Durio zibethinus HOM05D006470 ORTHO05D007978 2.2e-14 84.7 138 35.5
SEGI_23933 Sequoiadendron giganteum HOM05D006470 ORTHO05D007978 2.2e-14 84.7 134 33.6
Cpa.g.sc165.30 Carica papaya HOM05D006470 ORTHO05D007978 6.3e-14 83.2 142 31.7
Hma1.2p1_0576F.1_g181850 Hydrangea macrophylla HOM05D006470 ORTHO05D007978 2.4e-13 81.3 145 35.9
SMO146G0184 Selaginella moellendorffii HOM05D003233 ORTHO05D007978 2.4e-13 81.3 147 33.3
Lj4g0016292 Lotus japonicus HOM05D004034 ORTHO05D004210 2.0e-12 78.2 138 35.5
Ciclev10020031m.g Citrus clementina HOM05D006470 ORTHO05D007978 4.5e-12 77.0 147 32.0
Cc01_g18070 Coffea canephora HOM05D006470 ORTHO05D007978 4.5e-12 77.0 136 33.1
Ca_09663_v3 Cicer arietinum L. HOM05D006470 ORTHO05D007978 7.7e-12 76.3 172 28.5
Medtr1g069695 Medicago truncatula HOM05D006470 ORTHO05D007978 7.7e-12 76.3 145 31.7
vmacro02686 Vaccinium macrocarpon HOM05D006470 ORTHO05D007978 7.7e-12 76.3 136 32.4
BraA01t00881Z Brassica rapa HOM05D006470 ORTHO05D007978 1.3e-11 75.5 184 29.9
BcaC09g51655 Brassica carinata HOM05D006470 ORTHO05D007978 2.2e-11 74.7 172 30.2
BolC1t01056H Brassica oleracea HOM05D006470 ORTHO05D007978 2.2e-11 74.7 172 30.2
Manes.12G034500 Manihot esculenta HOM05D006470 ORTHO05D007978 2.2e-11 74.7 148 30.4
C01p10920 Brassica napus HOM05D006470 ORTHO05D007978 2.9e-11 74.3 172 30.2
Glyma.08G097400 Glycine max HOM05D004034 ORTHO05D004210 2.9e-11 74.3 141 34.0
A01p09340 Brassica napus HOM05D006470 ORTHO05D007978 3.8e-11 73.9 184 29.3
Glyma.10G038800 Glycine max HOM05D006470 ORTHO05D007978 5.0e-11 73.6 159 30.8
SalBow4G0507 Salvia bowleyana HOM05D006470 ORTHO05D007978 8.5e-11 72.8 137 33.6
SMO239G0192 Selaginella moellendorffii HOM05D004034 ORTHO05D004210 1.1e-10 72.4 137 30.7
Ca_00534_v3 Cicer arietinum L. HOM05D004034 ORTHO05D004210 1.9e-10 71.6 140 32.1
AUR62025485 Chenopodium quinoa HOM05D006470 ORTHO05D007978 3.2e-10 70.9 140 32.9
MBI07_g00478_MAGBIO Magnolia biondii HOM05D004034 ORTHO05D004210 3.2e-10 70.9 141 31.2
Phvul.007G191000 Phaseolus vulgaris HOM05D006470 ORTHO05D007978 3.2e-10 70.9 173 27.2
VMungo0720G2572 Vigna mungo HOM05D006470 ORTHO05D007978 3.2e-10 70.9 151 32.5
Actinidia11188 Actinidia chinensis HOM05D000176 ORTHO05D000106 4.2e-10 70.5 133 31.6
Glyma.15G093000 Glycine max HOM05D004034 ORTHO05D004210 4.2e-10 70.5 138 31.9
TWI12G0101 Tripterygium wilfordii HOM05D006470 ORTHO05D007978 5.5e-10 70.1 138 29.7
CiPaw.03G267400 Carya illinoinensis HOM05D006470 ORTHO05D007978 7.2e-10 69.7 149 32.2
PGSC0003DMG400021279 Solanum tuberosum HOM05D004034 ORTHO05D004210 7.2e-10 69.7 137 30.7
Migut.D00451 Erythranthe guttata HOM05D006470 ORTHO05D007978 1.2e-09 68.9 206 29.6
Sopen10g003730 Solanum pennellii HOM05D004034 ORTHO05D004210 1.2e-09 68.9 137 31.4
arahy.Tifrunner.gnm1.ann1.78CLWT Arachis hypogaea HOM05D004034 ORTHO05D004210 1.6e-09 68.6 141 29.1
arahy.Tifrunner.gnm1.ann1.ZI84TJ Arachis hypogaea HOM05D004034 ORTHO05D004210 1.6e-09 68.6 141 29.1
Psat6g062280 Pisum sativum HOM05D006470 ORTHO05D007978 1.6e-09 68.6 156 30.8
Sp7g26550 Schrenkiella parvula HOM05D006470 ORTHO05D007978 2.7e-09 67.8 145 31.7
ATR0213G033 Amborella trichopoda HOM05D004034 ORTHO05D004210 3.6e-09 67.4 139 29.5
Thhalv10004133m.g Eutrema salsugineum HOM05D003233 ORTHO05D003694 4.7e-09 67.0 156 29.5
TWI18G0736 Tripterygium wilfordii HOM05D006470 ORTHO05D007978 4.7e-09 67.0 138 29.7
DCAR_012563 Daucus carota HOM05D006470 ORTHO05D007978 7.9e-09 66.2 140 30.0
Nn6g34427 Nelumbo nucifera HOM05D004034 ORTHO05D004210 7.9e-09 66.2 126 32.5
arahy.Tifrunner.gnm1.ann1.NTND9X Arachis hypogaea HOM05D006470 ORTHO05D007978 1.4e-08 65.5 166 28.3
Lalb_Chr25g0289891 Lupinus albus HOM05D006470 ORTHO05D007978 1.8e-08 65.1 141 29.8
CARHR288530 Cardamine hirsuta HOM05D003233 ORTHO05D003694 2.3e-08 64.7 148 31.8
Glyma.13G125201 Glycine max HOM05D006470 ORTHO05D007978 3.9e-08 63.9 138 29.7
Thhalv10027034m.g Eutrema salsugineum HOM05D006470 ORTHO05D007978 5.1e-08 63.5 168 28.0
Glyma.05G141700 Glycine max HOM05D004034 ORTHO05D004210 6.7e-08 63.2 107 35.5
Sc05g0003180 Simmondsia chinensis HOM05D006470 ORTHO05D007978 6.7e-08 63.2 142 29.6
Lj5g0015356 Lotus japonicus HOM05D006470 ORTHO05D007978 8.8e-08 62.8 142 31.0
C07p34540 Brassica napus HOM05D003233 ORTHO05D003694 1.1e-07 62.4 156 29.5
BolC7t43985H Brassica oleracea HOM05D003233 ORTHO05D003694 1.1e-07 62.4 156 29.5
BcaB03g15848 Brassica carinata HOM05D003233 ORTHO05D003694 2.0e-07 61.6 151 29.8
BcaC06g33970 Brassica carinata HOM05D003233 ORTHO05D003694 3.3e-07 60.8 155 29.0
FvH4_2g21070 Fragaria vesca HOM05D006470 ORTHO05D007978 4.4e-07 60.5 167 28.1
FAN24G3268 Fragaria x ananassa HOM05D006470 ORTHO05D007978 4.4e-07 60.5 167 28.1
A06p42610 Brassica napus HOM05D003233 ORTHO05D003694 9.7e-07 59.3 147 29.3
BraA06t27176Z Brassica rapa HOM05D003233 ORTHO05D003694 9.7e-07 59.3 147 29.3
Sed0003902 Sechium edule HOM05D006470 ORTHO05D007978 9.7e-07 59.3 164 25.6
Os06g0627500 Oryza sativa ssp. japonica HOM05D006470 ORTHO05D007978 2.2e-06 58.2 122 33.6
Migut.M00898 Erythranthe guttata HOM05D004034 ORTHO05D004210 2.8e-06 57.8 141 29.1
CANSAT64G1561 Cannabis sativa HOM05D003233 ORTHO05D003694 3.7e-06 57.4 145 31.7
Hund25113 Selenicereus undatus HOM05D003233 ORTHO05D003694 3.7e-06 57.4 139 30.2
Lj5P370T48 Lonicera japonica HOM05D000071 ORTHO05D000029 4.8e-06 57.0 179 29.6
Lj6P34T13 Lonicera japonica HOM05D000071 ORTHO05D000029 4.8e-06 57.0 143 33.6
Manes.14G096200 Manihot esculenta HOM05D003233 ORTHO05D003694 6.3e-06 56.6 149 30.2
QL01p000932 Quercus lobata HOM05D003233 ORTHO05D003694 6.3e-06 56.6 149 31.5


User provided reference genes

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