Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG4G3530 Aethionema arabicum HOM05D005606 ORTHO05D006446 1.4e-282 975.7 515 100.0
Sp5g28210 Schrenkiella parvula HOM05D005606 ORTHO05D006446 5.5e-239 830.9 520 82.9
Thhalv10018404m.g Eutrema salsugineum HOM05D005606 ORTHO05D006446 3.6e-238 828.2 520 82.9
AL2G33010 Arabidopsis lyrata HOM05D005606 ORTHO05D006446 1.0e-237 826.6 520 82.1
AT1G73240 Arabidopsis thaliana HOM05D005606 ORTHO05D006446 1.8e-234 815.8 520 80.8
Carub.0002s2004 Capsella rubella HOM05D005606 ORTHO05D006446 1.0e-229 800.0 520 81.5
CARHR066250 Cardamine hirsuta HOM05D005606 ORTHO05D006446 6.7e-229 797.3 516 80.8
BcaB03g15036 Brassica carinata HOM05D005606 ORTHO05D006446 5.9e-225 784.3 515 78.6
C06p47380 Brassica napus HOM05D005606 ORTHO05D006446 1.6e-222 776.2 516 79.1
A07p39190 Brassica napus HOM05D005606 ORTHO05D006446 2.1e-222 775.8 515 78.6
BolC6t39777H Brassica oleracea HOM05D005606 ORTHO05D006446 1.0e-221 773.5 516 79.1
BcaC08g46742 Brassica carinata HOM05D005606 ORTHO05D006446 1.8e-221 772.7 516 78.5
BraA07t31468Z Brassica rapa HOM05D005606 ORTHO05D006446 3.9e-221 771.5 515 78.1
THA.LOC104810627 Tarenaya hassleriana HOM05D005606 ORTHO05D006446 1.9e-207 726.1 521 74.7
Ciclev10023713m.g Citrus clementina HOM05D005606 ORTHO05D006446 1.8e-149 533.5 521 55.5
Manes.15G103000 Manihot esculenta HOM05D005606 ORTHO05D006446 2.4e-146 523.1 536 53.5
Dinv09771 Davidia involucrata HOM05D005606 ORTHO05D006446 1.0e-144 517.7 532 54.5
Manes.03G090364 Manihot esculenta HOM05D005606 ORTHO05D006446 8.7e-144 514.6 538 53.5
Prupe.4G086400 Prunus persica HOM05D005606 ORTHO05D006446 1.9e-143 513.5 545 53.0
Potri.001G013300 Populus trichocarpa HOM05D005606 ORTHO05D006446 3.3e-143 512.7 534 53.9
Cpa.g.sc111.40 Carica papaya HOM05D005606 ORTHO05D006446 2.1e-142 510.0 530 53.2
Atru.chr9.366 Acer truncatum HOM05D005606 ORTHO05D006446 3.7e-142 509.2 533 53.7
CiPaw.09G118900 Carya illinoinensis HOM05D005606 ORTHO05D006446 1.8e-141 506.9 546 52.4
TWI81G0505 Tripterygium wilfordii HOM05D005606 ORTHO05D006446 6.9e-141 505.0 538 52.4
MD05G1278400 Malus domestica HOM05D005606 ORTHO05D006446 2.9e-139 499.6 549 51.2
Sabra01G0009700 Salix brachista HOM05D005606 ORTHO05D006446 6.4e-139 498.4 550 51.6
CANSAT35G0050 Cannabis sativa HOM05D005606 ORTHO05D006446 1.1e-138 497.7 548 51.8
Eucgr.K02306 Eucalyptus grandis HOM05D005606 ORTHO05D006446 1.4e-138 497.3 541 52.3
RcHm_v2.0_Chr5g0015011 Rosa chinensis HOM05D005606 ORTHO05D006446 3.5e-137 492.7 538 52.4
CsaV3_6G052120 Cucumis sativus L. HOM05D005606 ORTHO05D006446 6.7e-136 488.4 546 49.5
QL05p054675 Quercus lobata HOM05D005606 ORTHO05D006446 6.7e-136 488.4 681 44.8
ClCG01G024960 Citrullus lanatus HOM05D005606 ORTHO05D006446 4.3e-135 485.7 546 49.6
GSVIVG01012914001 Vitis vinifera HOM05D005606 ORTHO05D006446 5.6e-135 485.3 524 52.9
Thecc.03G071900 Theobroma cacao HOM05D005606 ORTHO05D006446 3.7e-134 482.6 512 52.5
arahy.Tifrunner.gnm1.ann1.XD6SW7 Arachis hypogaea HOM05D005606 ORTHO05D006446 1.4e-133 480.7 531 51.4
FAN11G2201 Fragaria x ananassa HOM05D005606 ORTHO05D006446 1.4e-133 480.7 531 51.0
Lalb_Chr20g0117701 Lupinus albus HOM05D005606 ORTHO05D006446 1.4e-133 480.7 538 51.1
FAN25G1117 Fragaria x ananassa HOM05D005606 ORTHO05D006446 1.8e-133 480.3 539 50.5
MD10G1257000 Malus domestica HOM05D005606 ORTHO05D006446 1.8e-133 480.3 547 50.8
Cfa000886 Carpinus fangiana HOM05D005606 ORTHO05D006446 3.1e-133 479.6 549 52.1
FAN16G3646 Fragaria x ananassa HOM05D005606 ORTHO05D006446 1.2e-132 477.6 533 50.7
FAN21G0753 Fragaria x ananassa HOM05D005606 ORTHO05D006446 1.2e-132 477.6 543 50.3
FvH4_3g04970 Fragaria vesca HOM05D005606 ORTHO05D006446 1.5e-132 477.2 531 51.0
Lj6g0007906 Lotus japonicus HOM05D005606 ORTHO05D006446 3.4e-132 476.1 519 52.0
Cc04_g08790 Coffea canephora HOM05D005606 ORTHO05D006446 4.5e-132 475.7 537 50.1
Nn4g24861 Nelumbo nucifera HOM05D005606 ORTHO05D006446 1.0e-131 474.6 536 50.4
Rhsim08G0124400 Rhododendron simsii HOM05D005606 ORTHO05D006446 1.4e-130 470.7 540 50.4
Lj5A166G73 Lonicera japonica HOM05D005606 ORTHO05D006446 3.2e-130 469.5 538 49.3
Sed0004896 Sechium edule HOM05D005606 ORTHO05D006446 1.2e-129 467.6 544 48.7
Sed0002755 Sechium edule HOM05D005606 ORTHO05D006446 1.6e-129 467.2 545 48.6
Solyc03g098340.4 Solanum lycopersicum HOM05D005606 ORTHO05D006446 3.9e-128 462.6 539 50.6
Sopen03g029090 Solanum pennellii HOM05D005606 ORTHO05D006446 6.7e-128 461.8 539 50.6
arahy.Tifrunner.gnm1.ann1.J0D3J2 Arachis hypogaea HOM05D005606 ORTHO05D006446 1.9e-127 460.3 510 51.4
arahy.Tifrunner.gnm1.ann1.KIB2TD Arachis hypogaea HOM05D000001 ORTHO05D006446 1.9e-127 460.3 517 51.1
MELO3C007099.2 Cucumis melo HOM05D005606 ORTHO05D006446 4.8e-126 455.7 571 47.1
PGSC0003DMG400025630 Solanum tuberosum HOM05D005606 ORTHO05D006446 4.8e-126 455.7 539 50.1
CSS0018749 Camellia sinensis var. sinensis HOM05D005606 ORTHO05D006446 6.3e-126 455.3 540 49.1
Gorai.004G048400 Gossypium raimondii HOM05D005606 ORTHO05D006446 1.4e-125 454.1 514 50.2
PGR044G1587 Punica granatum HOM05D005606 ORTHO05D006446 1.8e-125 453.8 545 48.8
Gohir.A08G038700 Gossypium hirsutum HOM05D005606 ORTHO05D006446 5.3e-125 452.2 514 49.8
Gohir.D08G048900 Gossypium hirsutum HOM05D005606 ORTHO05D006446 4.5e-124 449.1 514 49.8
Medtr2g018830 Medicago truncatula HOM05D005606 ORTHO05D006446 1.0e-123 448.0 521 49.7
SGA_v2.0_scaffold90G27762 Striga asiatica HOM05D005606 ORTHO05D006446 1.3e-123 447.6 538 49.3
Glyma.15G091800 Glycine max HOM05D005606 ORTHO05D006446 1.7e-123 447.2 513 51.3
Ca_00517_v3 Cicer arietinum L. HOM05D005606 ORTHO05D006446 3.8e-123 446.0 524 48.3
Oeu023545.1 Olea europaea HOM05D005606 ORTHO05D006446 3.8e-123 446.0 536 49.6
Actinidia37370 Actinidia chinensis HOM05D005606 ORTHO05D006446 2.5e-122 443.4 502 52.6
SalBow5G2126 Salvia bowleyana HOM05D005606 ORTHO05D006446 1.6e-121 440.7 534 47.6
Glyma.13G220600 Glycine max HOM05D005606 ORTHO05D006446 3.6e-121 439.5 514 49.8
Duzib211G0450 Durio zibethinus HOM05D005606 ORTHO05D006446 4.6e-121 439.1 514 49.6
arahy.Tifrunner.gnm1.ann1.P0FE7Q Arachis hypogaea HOM05D005606 ORTHO05D006446 3.0e-120 436.4 453 52.3
MSTRG.11550 Avicennia marina HOM05D005606 ORTHO05D006446 5.1e-120 435.6 545 48.1
PSO063G0483 Papaver somniferum HOM05D005606 ORTHO05D006446 9.7e-119 431.4 540 48.7
PSO782G3878 Papaver somniferum HOM05D005606 ORTHO05D006446 1.7e-118 430.6 544 48.3
Oeu038484.2 Olea europaea HOM05D005606 ORTHO05D006446 2.4e-117 426.8 574 46.7
CAN.G1631.5 Capsicum annuum HOM05D005606 ORTHO05D006446 3.1e-117 426.4 432 54.4
EL10Ac8g19487 Beta vulgaris HOM05D005606 ORTHO05D006446 5.3e-117 425.6 539 47.3
Hund06728 Selenicereus undatus HOM05D005606 ORTHO05D006446 9.1e-117 424.9 534 47.4
Aqoxy3G04204 Aquilegia oxysepala HOM05D005606 ORTHO05D006446 1.2e-116 424.5 541 47.7
Migut.O00253 Erythranthe guttata HOM05D005606 ORTHO05D006446 2.6e-116 423.3 539 46.0
Lsat_1_v5_gn_8_221 Lactuca sativa HOM05D005606 ORTHO05D006446 2.2e-115 420.2 529 46.7
Phvul.006G167500 Phaseolus vulgaris HOM05D005606 ORTHO05D006446 4.2e-114 416.0 387 56.6
DCAR_010217 Daucus carota HOM05D005606 ORTHO05D006446 9.4e-114 414.8 536 46.1
AUR62041591 Chenopodium quinoa HOM05D005606 ORTHO05D006446 1.0e-112 411.4 472 49.8
Sc04g0004710 Simmondsia chinensis HOM05D005606 ORTHO05D006446 3.0e-112 409.8 529 46.5
CDE04G0503 Ceratophyllum demersum HOM05D005606 ORTHO05D006446 2.0e-111 407.1 438 49.8
VMungo0540G1265 Vigna mungo HOM05D005606 ORTHO05D006446 7.4e-111 405.2 496 49.4
Nitab4.5_0004612g0090 Nicotiana tabacum HOM05D005606 ORTHO05D006446 3.2e-106 389.8 533 46.0
HanXRQChr05g0141141 Helianthus annuus HOM05D005606 ORTHO05D006446 3.9e-104 382.9 525 45.5
Peaxi162Scf00171g00427 Petunia axillaris HOM05D005606 ORTHO05D006446 4.5e-100 369.4 538 42.9
CDE02G0130 Ceratophyllum demersum HOM05D005606 ORTHO05D006446 3.2e-98 363.2 431 47.1
Medtr8g007580 Medicago truncatula HOM05D005606 ORTHO05D006446 3.6e-97 359.8 526 44.5
Ah.14g085920 Amaranthus hybridus HOM05D005606 ORTHO05D001302 2.6e-95 353.6 471 46.1
Psat1g191760 Pisum sativum HOM05D005606 ORTHO05D006446 8.3e-94 348.6 346 52.6
SEGI_11499 Sequoiadendron giganteum HOM05D005606 ORTHO05D006446 1.6e-89 334.3 540 39.6
Medtr8g008810 Medicago truncatula HOM05D005606 ORTHO05D006446 8.0e-81 305.4 314 54.1
TAR629G2351 Trochodendron aralioides HOM05D005606 ORTHO05D006446 1.5e-79 301.2 379 48.8
Nitab4.5_0001180g0240 Nicotiana tabacum HOM05D005606 ORTHO05D006446 9.2e-77 292.0 542 37.3
Zm00001eb250810 Zea mays HOM05D005606 ORTHO05D006446 1.6e-76 291.2 463 40.8
vmacro17739 Vaccinium macrocarpon HOM05D005606 ORTHO05D006446 1.4e-72 278.1 321 50.2
MBI06_g43804_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 4.0e-72 276.6 358 46.9
AagrBONN_evm.TU.Sc2ySwM_228.2052 Anthoceros agrestis HOM05D005606 ORTHO05D006446 2.6e-71 273.9 437 38.0
Pp3c23_16320 Physcomitrium patens HOM05D005606 ORTHO05D006446 2.6e-71 273.9 435 39.1
Mapoly0061s0120 Marchantia polymorpha HOM05D005606 ORTHO05D006446 3.7e-70 270.0 461 40.1
Potri.003G213050 Populus trichocarpa HOM05D005606 ORTHO05D006446 1.7e-67 261.2 283 53.4
SMO358G0536 Selaginella moellendorffii HOM05D005606 ORTHO05D006446 1.7e-67 261.2 471 38.4
AUR62042457 Chenopodium quinoa HOM05D005606 ORTHO05D006446 2.3e-59 234.2 318 46.2
Zm00001eb187400 Zea mays HOM05D005606 ORTHO05D006446 4.0e-56 223.4 427 35.1
MBI06_g39886_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 5.2e-56 223.0 270 46.7
TPR.G7652 Trifolium pratense HOM05D005606 ORTHO05D006446 2.0e-55 221.1 180 60.6
Os02g0684300 Oryza sativa ssp. japonica HOM05D005606 ORTHO05D006446 2.1e-52 211.1 256 46.5
ATR0824G067 Amborella trichopoda HOM05D005606 ORTHO05D006446 3.5e-52 210.3 325 41.8
Hma1.2p1_0403F.1_g145180 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 3.3e-50 203.8 165 60.6
CBR_g11193 Chara braunii HOM05D005606 ORTHO05D006446 3.6e-49 200.3 409 35.0
Lj9C350G3 Lonicera japonica HOM05D005606 ORTHO05D006446 1.5e-47 194.9 271 43.5
Hma1.2p1_0403F.1_g145190 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 4.6e-44 183.3 158 60.8
MBI06_g21907_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 3.3e-42 177.2 261 43.3
Haze_05701 Corylus avellana HOM05D005606 ORTHO05D006446 5.3e-40 169.9 261 42.9
unitig_750.g28452 Utricularia gibba HOM05D005606 ORTHO05D006446 5.3e-40 169.9 336 36.3
ATR0879G001 Amborella trichopoda HOM05D005606 ORTHO05D006446 6.0e-36 156.4 196 45.9
unitig_750.g28451 Utricularia gibba HOM05D006848 ORTHO05D008445 4.3e-34 150.2 155 50.3
ATR0824G212 Amborella trichopoda HOM05D005606 ORTHO05D006446 9.6e-34 149.1 159 51.6
vmacro17738 Vaccinium macrocarpon HOM05D005606 ORTHO05D006446 1.6e-33 148.3 123 61.8
ECA233G5513 Erigeron canadensis HOM05D005606 ORTHO05D006446 5.4e-29 133.3 170 46.5
Medtr8g008813 Medicago truncatula HOM05D005606 ORTHO05D006446 3.9e-27 127.1 143 49.0
TPR.G20455 Trifolium pratense HOM05D005606 ORTHO05D006446 8.7e-27 125.9 117 54.7
BcaC01g04920 Brassica carinata HOM05D005606 ORTHO05D006446 1.1e-24 119.0 137 54.0
Aqoxy3G04211 Aquilegia oxysepala HOM05D005606 ORTHO05D006446 1.0e-22 112.5 243 37.0
Medtr0199s0020 Medicago truncatula HOM05D005606 ORTHO05D006446 4.3e-18 97.1 114 50.0
Hma1.2p1_0403F.1_g145170 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 1.0e-14 85.9 196 34.7
Hma1.2p1_2967F.1_g331010 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 1.3e-14 85.5 209 34.4
TPR.G26262 Trifolium pratense HOM05D005606 ORTHO05D006446 1.7e-14 85.1 163 38.0
Ah.15g099030 Amaranthus hybridus HOM05D002838 ORTHO05D002114 3.2e-13 80.9 109 46.8
Oeu061196.1 Olea europaea HOM05D005606 ORTHO05D006446 2.2e-06 58.2 93 38.7
Sabra03G0155900 Salix brachista HOM05D005606 ORTHO05D006446 2.9e-06 57.8 90 38.9
Sabra03G0159100 Salix brachista HOM05D005606 ORTHO05D006446 2.9e-06 57.8 90 38.9


User provided reference genes

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