Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG4G3310 Aethionema arabicum HOM05D005721 ORTHO05D006758 0.0e+00 1305.0 663 100.0
Sp5g27980 Schrenkiella parvula HOM05D005721 ORTHO05D006758 0.0e+00 1139.8 664 86.6
AT1G73020 Arabidopsis thaliana HOM05D005721 ORTHO05D006758 0.0e+00 1133.6 666 86.3
AL2G32770 Arabidopsis lyrata HOM05D005721 ORTHO05D006758 0.0e+00 1130.5 661 86.2
Carub.0002s1978 Capsella rubella HOM05D005721 ORTHO05D006758 0.0e+00 1129.4 659 86.6
Thhalv10018233m.g Eutrema salsugineum HOM05D005721 ORTHO05D006758 0.0e+00 1125.2 667 85.6
A07p39040 Brassica napus HOM05D005721 ORTHO05D006758 0.0e+00 1122.8 658 86.0
C06p47250 Brassica napus HOM05D005721 ORTHO05D006758 0.0e+00 1121.7 660 85.6
BolC6t39764H Brassica oleracea HOM05D005721 ORTHO05D006758 0.0e+00 1121.7 660 85.6
BraA07t31454Z Brassica rapa HOM05D005721 ORTHO05D006758 0.0e+00 1114.0 674 84.4
CARHR065990 Cardamine hirsuta HOM05D005721 ORTHO05D006758 0.0e+00 1111.3 657 85.1
BolC6t38551H Brassica oleracea HOM05D005721 ORTHO05D006758 4.3e-305 1050.8 661 80.5
BraA07t30638Z Brassica rapa HOM05D005721 ORTHO05D006758 3.1e-303 1044.6 649 81.7
A07p30000 Brassica napus HOM05D005721 ORTHO05D006758 2.6e-302 1041.6 665 80.0
THA.LOC104813944 Tarenaya hassleriana HOM05D005721 ORTHO05D006758 3.4e-302 1041.2 662 79.5
BcaC08g45678 Brassica carinata HOM05D005721 ORTHO05D006758 1.0e-301 1039.6 661 79.9
C06p34410 Brassica napus HOM05D005721 ORTHO05D006758 1.9e-300 1035.4 661 79.4
GSVIVG01016897001 Vitis vinifera HOM05D005721 ORTHO05D006758 6.1e-259 897.5 648 68.7
Thecc.06G106800 Theobroma cacao HOM05D005721 ORTHO05D006758 4.0e-258 894.8 648 69.9
Duzib235G0012 Durio zibethinus HOM05D005721 ORTHO05D006758 1.3e-256 889.8 648 69.0
TAR383G0756 Trochodendron aralioides HOM05D005721 ORTHO05D006758 2.9e-256 888.6 661 68.4
Haze_15914 Corylus avellana HOM05D005721 ORTHO05D006758 8.3e-256 887.1 648 68.7
Gorai.011G068100 Gossypium raimondii HOM05D005721 ORTHO05D006758 1.6e-254 882.9 648 67.6
Gohir.A10G062400 Gossypium hirsutum HOM05D005721 ORTHO05D006758 4.6e-254 881.3 648 67.4
CSS0018154 Camellia sinensis var. sinensis HOM05D005721 ORTHO05D006758 5.9e-254 880.9 650 68.6
Dinv37937 Davidia involucrata HOM05D005721 ORTHO05D006758 1.0e-253 880.2 648 68.4
Duzib192G0301 Durio zibethinus HOM05D005721 ORTHO05D006758 2.8e-251 872.1 643 68.3
Manes.11G029200 Manihot esculenta HOM05D005721 ORTHO05D006758 1.2e-249 866.7 644 66.3
Atru.chr1.3621 Acer truncatum HOM05D005721 ORTHO05D006758 1.5e-249 866.3 649 66.7
Ciclev10025098m.g Citrus clementina HOM05D005721 ORTHO05D006758 2.0e-249 865.9 660 66.7
Hma1.2p1_0388F.1_g142110 Hydrangea macrophylla HOM05D005721 ORTHO05D006758 2.0e-249 865.9 650 67.4
QL05p015721 Quercus lobata HOM05D005721 ORTHO05D006758 7.5e-249 864.0 656 66.6
QL05p015579 Quercus lobata HOM05D005721 ORTHO05D006758 3.7e-248 861.7 656 66.6
CiPaw.01G227700 Carya illinoinensis HOM05D005721 ORTHO05D006758 6.4e-248 860.9 647 67.1
RcHm_v2.0_Chr2g0142311 Rosa chinensis HOM05D005721 ORTHO05D006758 1.4e-247 859.8 654 66.5
CANSAT56G2950 Cannabis sativa HOM05D005721 ORTHO05D006758 3.2e-247 858.6 658 65.8
MD09G1196700 Malus domestica HOM05D005721 ORTHO05D006758 5.4e-247 857.8 642 68.4
Prupe.3G053200 Prunus persica HOM05D005721 ORTHO05D006758 1.6e-246 856.3 654 67.4
Actinidia21738 Actinidia chinensis HOM05D005721 ORTHO05D006758 1.7e-245 852.8 652 66.0
PGR102G0208 Punica granatum HOM05D005721 ORTHO05D006758 5.0e-245 851.3 658 66.4
Eucgr.F03100 Eucalyptus grandis HOM05D005721 ORTHO05D006758 1.1e-244 850.1 646 66.6
MD17G1178100 Malus domestica HOM05D005721 ORTHO05D006758 2.5e-244 849.0 654 66.8
Aqoxy7G03983 Aquilegia oxysepala HOM05D005721 ORTHO05D006758 8.1e-243 844.0 648 66.5
FvH4_6g32880 Fragaria vesca HOM05D005721 ORTHO05D006758 1.4e-242 843.2 641 66.8
Nn6g35400 Nelumbo nucifera HOM05D005721 ORTHO05D006758 2.3e-242 842.4 647 66.5
Sed0006169 Sechium edule HOM05D005721 ORTHO05D006758 3.1e-242 842.0 643 66.7
vmacro18826 Vaccinium macrocarpon HOM05D005721 ORTHO05D006758 8.9e-242 840.5 650 66.3
CsaV3_7G034930 Cucumis sativus L. HOM05D005721 ORTHO05D006758 2.0e-241 839.3 642 67.1
FAN02G2457 Fragaria x ananassa HOM05D005721 ORTHO05D006758 2.0e-241 839.3 641 66.6
Lj3g0007444 Lotus japonicus HOM05D005721 ORTHO05D006758 2.6e-241 839.0 655 65.2
Medtr8g015550 Medicago truncatula HOM05D005721 ORTHO05D006758 2.9e-240 835.5 648 64.4
FAN05G3306 Fragaria x ananassa HOM05D005721 ORTHO05D006758 3.7e-240 835.1 641 66.5
PSO210G3246 Papaver somniferum HOM05D005721 ORTHO05D006758 2.1e-238 829.3 662 64.8
Dinv30404 Davidia involucrata HOM05D005721 ORTHO05D006758 3.5e-238 828.6 620 67.6
PSO210G5250 Papaver somniferum HOM05D005721 ORTHO05D006758 1.7e-237 826.2 651 65.4
Glyma.08G196700 Glycine max HOM05D005721 ORTHO05D006758 3.0e-237 825.5 643 64.9
Glyma.07G013000 Glycine max HOM05D005721 ORTHO05D006758 6.6e-237 824.3 643 64.9
Psat4g194600 Pisum sativum HOM05D005721 ORTHO05D006758 5.6e-236 821.2 648 63.3
Lsat_1_v5_gn_4_96061 Lactuca sativa HOM05D005721 ORTHO05D006758 8.1e-235 817.4 660 63.8
Lalb_Chr01g0013341 Lupinus albus HOM05D005721 ORTHO05D006758 2.3e-234 815.8 642 64.3
ECA232G2751 Erigeron canadensis HOM05D005721 ORTHO05D006758 3.4e-233 812.0 652 63.3
VMungo0331G1465 Vigna mungo HOM05D005721 ORTHO05D006758 4.4e-233 811.6 648 63.7
Nn8g38942 Nelumbo nucifera HOM05D005721 ORTHO05D006758 9.9e-233 810.4 649 63.2
SGA_v2.0_scaffold71G23752 Striga asiatica HOM05D005721 ORTHO05D006758 2.9e-232 808.9 642 65.1
Gohir.D10G064100 Gossypium hirsutum HOM05D005721 ORTHO05D006758 3.2e-231 805.4 575 68.7
Migut.I00999 Erythranthe guttata HOM05D005721 ORTHO05D006758 4.1e-231 805.1 654 63.3
Ca_23291_v3 Cicer arietinum L. HOM05D005721 ORTHO05D006758 1.2e-230 803.5 648 63.0
Phvul.010G142500 Phaseolus vulgaris HOM05D005721 ORTHO05D006758 2.3e-229 799.3 648 63.4
Solyc03g121350.3 Solanum lycopersicum HOM05D005721 ORTHO05D006758 6.6e-229 797.7 662 61.6
Sopen03g040160 Solanum pennellii HOM05D005721 ORTHO05D006758 6.6e-229 797.7 662 61.6
Nitab4.5_0004848g0040 Nicotiana tabacum HOM05D005721 ORTHO05D006758 5.6e-228 794.7 657 61.6
CAN.G1668.6 Capsicum annuum HOM05D005721 ORTHO05D006758 7.3e-228 794.3 655 61.7
Cc04_g02230 Coffea canephora HOM05D005721 ORTHO05D006758 9.6e-228 793.9 643 62.5
Hund07658 Selenicereus undatus HOM05D005721 ORTHO05D006758 9.6e-228 793.9 643 64.1
MBI01_g16575_MAGBIO Magnolia biondii HOM05D005721 ORTHO05D006758 8.4e-224 780.8 645 63.3
arahy.Tifrunner.gnm1.ann1.NQY1Y2 Arachis hypogaea HOM05D005721 ORTHO05D006758 1.1e-223 780.4 642 61.2
arahy.Tifrunner.gnm1.ann1.HT12QJ Arachis hypogaea HOM05D005721 ORTHO05D006758 2.4e-223 779.2 642 61.2
ClCG09G000510 Citrullus lanatus HOM05D005721 ORTHO05D006758 1.7e-221 773.1 642 63.1
TPR.G8754 Trifolium pratense HOM05D005721 ORTHO05D006758 9.0e-218 760.8 612 62.7
Nitab4.5_0006071g0030 Nicotiana tabacum HOM05D005721 ORTHO05D006758 5.8e-217 758.1 651 60.8
Lj9A516G96 Lonicera japonica HOM05D005721 ORTHO05D006758 2.4e-215 752.7 658 60.9
Peaxi162Scf00038g01247 Petunia axillaris HOM05D005721 ORTHO05D006758 3.4e-209 732.3 642 59.3
Os01g0706700 Oryza sativa ssp. japonica HOM05D005721 ORTHO05D006758 9.9e-209 730.7 641 59.0
ATR0789G086 Amborella trichopoda HOM05D005721 ORTHO05D006758 4.9e-208 728.4 654 59.8
Oeu001923.1 Olea europaea HOM05D005721 ORTHO05D006758 1.0e-205 720.7 652 58.9
Rhsim08G0230700 Rhododendron simsii HOM05D005721 ORTHO05D006758 1.0e-205 720.7 648 59.0
EL10Ac9g21136 Beta vulgaris HOM05D005721 ORTHO05D006758 2.3e-205 719.5 679 58.2
Cpa.g.sc131.22 Carica papaya HOM05D005721 ORTHO05D006758 4.9e-200 701.8 644 59.2
Sc12g0009950 Simmondsia chinensis HOM05D005721 ORTHO05D006758 5.0e-192 675.2 556 62.4
Hma1.2p1_0388F.1_g142120 Hydrangea macrophylla HOM05D005721 ORTHO05D006758 3.2e-191 672.5 525 65.1
DCAR_031423 Daucus carota HOM05D005721 ORTHO05D006758 4.6e-190 668.7 654 55.8
Zm00001eb361150 Zea mays HOM05D005721 ORTHO05D006758 2.0e-180 636.7 555 59.1
AUR62038341 Chenopodium quinoa HOM05D005721 ORTHO05D006758 1.3e-179 634.0 672 53.4
AUR62023905 Chenopodium quinoa HOM05D005721 ORTHO05D006758 4.8e-179 632.1 617 56.4
unitig_26.g8931 Utricularia gibba HOM05D005721 ORTHO05D006758 2.1e-174 616.7 629 53.3
Ah.01g004440 Amaranthus hybridus HOM05D005721 ORTHO05D006758 1.1e-170 604.4 651 53.9
Oeu026535.1 Olea europaea HOM05D005721 ORTHO05D006758 5.4e-154 548.9 445 62.2
AagrBONN_evm.TU.Sc2ySwM_344.674 Anthoceros agrestis HOM05D005721 ORTHO05D006758 1.9e-151 540.4 636 47.0
Mapoly0004s0214 Marchantia polymorpha HOM05D005721 ORTHO05D006758 2.5e-151 540.0 628 47.3
Zm00001eb155350 Zea mays HOM05D005721 ORTHO05D006758 2.8e-150 536.6 497 55.3
SMO147G0374 Selaginella moellendorffii HOM05D005721 ORTHO05D006758 6.3e-147 525.4 665 44.4
MELO3C024406.2 Cucumis melo HOM05D005721 ORTHO05D006758 6.1e-142 508.8 575 51.1
Pp3c7_22640 Physcomitrium patens HOM05D005721 ORTHO05D006758 3.4e-140 503.1 645 42.8
Actinidia32127 Actinidia chinensis HOM05D005721 ORTHO05D006758 7.5e-140 501.9 650 46.5
CBR_g57226 Chara braunii HOM05D005721 ORTHO05D006758 3.2e-114 416.8 625 39.2
arahy.Tifrunner.gnm1.ann1.NL3M0M Arachis hypogaea HOM05D005721 ORTHO05D006758 3.4e-76 290.4 336 49.1
FAN14G1222 Fragaria x ananassa HOM05D005721 ORTHO05D006758 8.5e-75 285.8 221 61.1
Oeu023783.1 Olea europaea HOM05D005721 ORTHO05D006758 4.7e-49 200.3 280 45.7
arahy.Tifrunner.gnm1.ann1.402B9T Arachis hypogaea HOM05D005721 ORTHO05D006758 1.7e-46 191.8 286 39.9
Gorai.010G178600 Gossypium raimondii HOM05D005721 ORTHO05D006758 6.5e-43 179.9 157 57.3
Zm00001eb344360 Zea mays HOM05D005721 ORTHO05D006758 8.5e-43 179.5 122 70.5
FvH4_6g32370 Fragaria vesca HOM05D005721 ORTHO05D006758 7.5e-39 166.4 141 56.7
Glyma.16G086100 Glycine max HOM05D005721 ORTHO05D006758 2.2e-38 164.9 107 77.6
Glyma.16G136400 Glycine max HOM05D005721 ORTHO05D006758 1.8e-37 161.8 107 76.6
SEGI_20658 Sequoiadendron giganteum HOM05D005721 ORTHO05D006758 1.0e-35 156.0 216 40.7
Zm00001eb192810 Zea mays HOM05D005721 ORTHO05D006758 2.9e-35 154.5 110 71.8
arahy.Tifrunner.gnm1.ann1.P3QXG2 Arachis hypogaea HOM05D005721 ORTHO05D006758 2.5e-34 151.4 199 48.2
Gohir.D06G152751 Gossypium hirsutum HOM05D005721 ORTHO05D006758 3.3e-34 151.0 156 50.6
Gohir.A06G146950 Gossypium hirsutum HOM05D005721 ORTHO05D006758 4.7e-33 147.1 156 52.6
VMungo0251G0043 Vigna mungo HOM05D005721 ORTHO05D006758 1.8e-32 145.2 131 55.0
Zm00001eb419420 Zea mays HOM05D005721 ORTHO05D006758 9.8e-31 139.4 97 70.1
QL05p015216 Quercus lobata HOM05D005721 ORTHO05D006758 8.3e-30 136.3 160 48.8
Glyma.12G149950 Glycine max HOM05D005721 ORTHO05D006758 7.0e-29 133.3 86 76.7
arahy.Tifrunner.gnm1.ann1.F8M988 Arachis hypogaea HOM05D005721 ORTHO05D006758 4.5e-28 130.6 87 70.1
arahy.Tifrunner.gnm1.ann1.SY3941 Arachis hypogaea HOM05D005721 ORTHO05D006758 6.8e-24 116.7 79 69.6
HanXRQChr05g0162621 Helianthus annuus HOM05D005721 ORTHO05D006758 2.2e-22 111.7 81 75.3
HanXRQChr04g0123091 Helianthus annuus HOM05D005721 ORTHO05D006758 2.7e-20 104.8 80 70.0
Glyma.09G112900 Glycine max HOM05D005721 ORTHO05D006758 7.8e-20 103.2 101 49.5
COL.COLO4_30597 Corchorus olitorius HOM05D005721 ORTHO05D006758 3.9e-19 100.9 88 59.1
arahy.Tifrunner.gnm1.ann1.EXE9LQ Arachis hypogaea HOM05D005721 ORTHO05D006758 5.8e-15 87.0 97 54.6
HanXRQChr09g0276291 Helianthus annuus HOM05D005721 ORTHO05D006758 2.1e-12 78.6 48 75.0
Glyma.19G071451 Glycine max HOM05D005721 ORTHO05D006758 3.5e-12 77.8 54 74.1
HanXRQChr05g0131511 Helianthus annuus HOM05D005721 ORTHO05D006758 3.5e-12 77.8 89 47.2
Cfa026500 Carpinus fangiana HOM05D005721 ORTHO05D006758 1.2e-09 69.3 558 22.0


User provided reference genes

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