Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG4G3010 Aethionema arabicum HOM05D006979 ORTHO05D008857 2.5e-173 612.1 319 100.0
Carub.0002s1948 Capsella rubella HOM05D006979 ORTHO05D008857 9.2e-128 460.7 315 76.5
Sp5g27700 Schrenkiella parvula HOM05D006979 ORTHO05D008857 1.0e-126 457.2 315 77.5
AL2G32310 Arabidopsis lyrata HOM05D006979 ORTHO05D008857 3.9e-126 455.3 315 74.9
BcaNung07150 Brassica carinata HOM05D006979 ORTHO05D008857 1.2e-124 450.3 314 76.8
A07p38800 Brassica napus HOM05D006979 ORTHO05D008857 4.0e-123 445.3 336 72.0
BraA07t31434Z Brassica rapa HOM05D006979 ORTHO05D008857 4.0e-123 445.3 336 72.0
C06p46960 Brassica napus HOM05D006979 ORTHO05D008857 2.6e-122 442.6 316 75.6
BolC6t39737H Brassica oleracea HOM05D006979 ORTHO05D008857 2.6e-122 442.6 316 75.6
BcaC08g46707 Brassica carinata HOM05D006979 ORTHO05D008857 4.4e-122 441.8 316 75.9
Thhalv10018914m.g Eutrema salsugineum HOM05D006979 ORTHO05D008857 9.0e-115 417.5 290 75.2
THA.LOC104813956 Tarenaya hassleriana HOM05D006979 ORTHO05D008857 4.0e-107 392.1 312 68.3
AT1G72640 Arabidopsis thaliana HOM05D006979 ORTHO05D008857 5.8e-98 361.7 255 75.7
Cpa.g.sc25.110 Carica papaya HOM05D006979 ORTHO05D008857 9.0e-91 337.8 317 61.2
Atru.chr1.3953 Acer truncatum HOM05D006979 ORTHO05D008857 3.5e-87 325.9 313 56.5
Ciclev10026147m.g Citrus clementina HOM05D006979 ORTHO05D008857 1.8e-86 323.6 308 57.5
Duzib235G1224 Durio zibethinus HOM05D006979 ORTHO05D008857 3.3e-85 319.3 305 57.7
Manes.11G021300 Manihot esculenta HOM05D006979 ORTHO05D008857 3.3e-85 319.3 306 58.5
AUR62009880 Chenopodium quinoa HOM05D006979 ORTHO05D008857 5.7e-85 318.5 272 61.4
Medtr8g019510 Medicago truncatula HOM05D006979 ORTHO05D008857 5.7e-85 318.5 270 61.5
AUR62001490 Chenopodium quinoa HOM05D006979 ORTHO05D008857 9.7e-85 317.8 272 61.8
COL.COLO4_30769 Corchorus olitorius HOM05D006979 ORTHO05D008857 2.8e-84 316.2 310 56.8
Potri.003G063800 Populus trichocarpa HOM05D006979 ORTHO05D008857 4.8e-84 315.5 306 58.8
Sabra03G0037400 Salix brachista HOM05D006979 ORTHO05D008857 6.3e-84 315.1 306 56.2
SGA_v2.0_scaffold4G02061 Striga asiatica HOM05D006979 ORTHO05D008857 6.3e-84 315.1 275 62.2
Cfa003539 Carpinus fangiana HOM05D006979 ORTHO05D008857 8.2e-84 314.7 270 61.9
MD09G1184500 Malus domestica HOM05D006979 ORTHO05D008857 1.1e-83 314.3 268 61.2
Thecc.06G118900 Theobroma cacao HOM05D006979 ORTHO05D008857 2.4e-83 313.2 302 56.3
Prupe.3G042700 Prunus persica HOM05D006979 ORTHO05D008857 6.9e-83 311.6 294 56.8
Lj3g0022239 Lotus japonicus HOM05D006979 ORTHO05D008857 9.0e-83 311.2 317 54.9
TPR.G16442 Trifolium pratense HOM05D006979 ORTHO05D008857 9.0e-83 311.2 326 54.3
CARHR065560 Cardamine hirsuta HOM05D006979 ORTHO05D008857 2.0e-82 310.1 198 80.8
TWI31G0112 Tripterygium wilfordii HOM05D006979 ORTHO05D008857 2.0e-82 310.1 283 59.7
Eucgr.F03173 Eucalyptus grandis HOM05D006979 ORTHO05D008857 4.5e-82 308.9 311 55.3
TAR383G0452 Trochodendron aralioides HOM05D006979 ORTHO05D008857 4.5e-82 308.9 272 59.9
GSVIVG01016774001 Vitis vinifera HOM05D006979 ORTHO05D008857 5.9e-82 308.5 293 58.4
RcHm_v2.0_Chr2g0145111 Rosa chinensis HOM05D006979 ORTHO05D008857 1.7e-81 307.0 311 56.6
FvH4_6g34590 Fragaria vesca HOM05D006979 ORTHO05D008857 5.0e-81 305.4 286 58.7
FAN09G4734 Fragaria x ananassa HOM05D006979 ORTHO05D008857 5.0e-81 305.4 286 58.7
Lalb_Chr04g0263421 Lupinus albus HOM05D006979 ORTHO05D008857 1.9e-80 303.5 268 60.8
Actinidia32181 Actinidia chinensis HOM05D006979 ORTHO05D008857 2.5e-80 303.1 287 59.6
Phvul.010G133500 Phaseolus vulgaris HOM05D006979 ORTHO05D008857 2.5e-80 303.1 318 54.7
CSS0026622 Camellia sinensis var. sinensis HOM05D006979 ORTHO05D008857 7.2e-80 301.6 306 55.2
Sed0019772 Sechium edule HOM05D006979 ORTHO05D008857 7.2e-80 301.6 265 59.6
Gohir.D05G142800 Gossypium hirsutum HOM05D006979 ORTHO05D008857 9.4e-80 301.2 304 52.6
Gorai.009G146700 Gossypium raimondii HOM05D006979 ORTHO05D008857 1.2e-79 300.8 304 52.6
vmacro15023 Vaccinium macrocarpon HOM05D006979 ORTHO05D008857 1.2e-79 300.8 308 55.8
CSS0018635 Camellia sinensis var. sinensis HOM05D006979 ORTHO05D008857 2.1e-79 300.1 306 55.2
Migut.D00941 Erythranthe guttata HOM05D006979 ORTHO05D008857 2.1e-79 300.1 276 59.1
PGSC0003DMG400011606 Solanum tuberosum HOM05D006979 ORTHO05D008857 2.7e-79 299.7 265 60.0
Rhsim08G0237900 Rhododendron simsii HOM05D006979 ORTHO05D008857 7.9e-79 298.1 270 58.9
Glyma.16G005300 Glycine max HOM05D006979 ORTHO05D008857 1.4e-78 297.4 270 57.4
Nitab4.5_0001199g0130 Nicotiana tabacum HOM05D006979 ORTHO05D008857 3.0e-78 296.2 259 59.5
Dinv04035 Davidia involucrata HOM05D006979 ORTHO05D008857 6.7e-78 295.0 253 62.5
CANSAT56G2284 Cannabis sativa HOM05D006979 ORTHO05D008857 8.8e-78 294.7 264 59.5
Sopen12g023760 Solanum pennellii HOM05D006979 ORTHO05D008857 8.8e-78 294.7 265 59.6
CiPaw.01G219600 Carya illinoinensis HOM05D006979 ORTHO05D008857 1.1e-77 294.3 254 61.0
Glyma.07G036000 Glycine max HOM05D006979 ORTHO05D008857 1.1e-77 294.3 318 53.5
Nitab4.5_0000189g0250 Nicotiana tabacum HOM05D006979 ORTHO05D008857 1.1e-77 294.3 259 59.8
CAN.G1368.7 Capsicum annuum HOM05D006979 ORTHO05D008857 1.5e-77 293.9 305 52.5
Oeu015481.1 Olea europaea HOM05D006979 ORTHO05D008857 2.5e-77 293.1 266 58.6
SalBow7G2243 Salvia bowleyana HOM05D006979 ORTHO05D008857 9.7e-77 291.2 286 57.3
QL05p008051 Quercus lobata HOM05D006979 ORTHO05D008857 1.7e-76 290.4 366 48.4
Lsat_1_v5_gn_5_135940 Lactuca sativa HOM05D006979 ORTHO05D008857 8.2e-76 288.1 309 52.4
ECA234G1570 Erigeron canadensis HOM05D006979 ORTHO05D008857 2.4e-75 286.6 272 55.5
FAN05G0457 Fragaria x ananassa HOM05D006979 ORTHO05D008857 2.4e-75 286.6 296 56.4
CDE05G0714 Ceratophyllum demersum HOM05D006979 ORTHO05D008857 3.1e-75 286.2 305 50.5
Sc08g0005680 Simmondsia chinensis HOM05D006979 ORTHO05D008857 3.1e-75 286.2 301 53.2
CsaV3_7G034520 Cucumis sativus L. HOM05D006979 ORTHO05D008857 1.0e-73 281.2 266 55.3
Solyc12g049280.3 Solanum lycopersicum HOM05D006979 ORTHO05D008857 1.7e-73 280.4 246 60.2
VMungo0331G0985 Vigna mungo HOM05D006979 ORTHO05D008857 2.2e-73 280.0 333 49.8
Atru.chr1.3954 Acer truncatum HOM05D006979 ORTHO05D008857 1.1e-72 277.7 249 57.8
Aqoxy5G02291 Aquilegia oxysepala HOM05D006979 ORTHO05D008857 1.9e-72 276.9 308 50.3
Os03g0410700 Oryza sativa ssp. japonica HOM05D006979 ORTHO05D008857 4.2e-72 275.8 260 56.2
PSO210G5065 Papaver somniferum HOM05D006979 ORTHO05D008857 4.2e-72 275.8 323 52.6
Peaxi162Scf00177g00513 Petunia axillaris HOM05D006979 ORTHO05D008857 5.5e-72 275.4 271 55.4
ClCG09G000940 Citrullus lanatus HOM05D006979 ORTHO05D008857 9.4e-72 274.6 308 49.7
MBI19_g11849_MAGBIO Magnolia biondii HOM05D006979 ORTHO05D008857 1.2e-71 274.2 269 54.6
PGR119G0938 Punica granatum HOM05D006979 ORTHO05D008857 2.1e-71 273.5 270 55.6
unitig_8.g3563 Utricularia gibba HOM05D006979 ORTHO05D008857 2.7e-71 273.1 275 55.3
Hund05741 Selenicereus undatus HOM05D006979 ORTHO05D008857 6.1e-71 271.9 321 49.8
Lj9A522T69 Lonicera japonica HOM05D006979 ORTHO05D008857 1.8e-70 270.4 252 57.1
PSO210G4684 Papaver somniferum HOM05D006979 ORTHO05D008857 2.3e-70 270.0 317 52.4
ATR0598G212 Amborella trichopoda HOM05D006979 ORTHO05D008857 2.6e-66 256.5 259 52.5
Haze_16022 Corylus avellana HOM05D006979 ORTHO05D008857 3.5e-66 256.1 306 49.3
Gohir.A05G140600 Gossypium hirsutum HOM05D006979 ORTHO05D008857 1.3e-65 254.2 304 47.7
Cc04_g01400 Coffea canephora HOM05D006979 ORTHO05D008857 1.9e-64 250.4 247 55.1
arahy.Tifrunner.gnm1.ann1.IV001U Arachis hypogaea HOM05D006979 ORTHO05D008857 1.0e-62 244.6 312 47.1
arahy.Tifrunner.gnm1.ann1.4E7AR5 Arachis hypogaea HOM05D006979 ORTHO05D008857 3.0e-62 243.0 312 46.8
Psat4g183680 Pisum sativum HOM05D006979 ORTHO05D008857 5.3e-59 232.3 195 62.6
Ca_05018_v3 Cicer arietinum L. HOM05D006979 ORTHO05D008857 7.7e-58 228.4 197 59.9
Pp3c11_2100 Physcomitrium patens HOM05D006979 ORTHO05D008857 9.4e-56 221.5 265 44.2
Hma1.2p1_0496F.1_g166210 Hydrangea macrophylla HOM05D006979 ORTHO05D008857 2.7e-55 219.9 172 66.9
Nn6g35601 Nelumbo nucifera HOM05D006979 ORTHO05D008857 6.3e-52 208.8 262 46.6
Zm00001eb019720 Zea mays HOM05D006979 ORTHO05D008857 1.4e-51 207.6 211 53.6
EL10Ac7g16405 Beta vulgaris HOM05D006979 ORTHO05D008857 7.7e-50 201.8 319 40.8
MELO3C024358.2 Cucumis melo HOM05D006979 ORTHO05D008857 1.4e-43 181.0 157 59.9
FAN14G3231 Fragaria x ananassa HOM05D006979 ORTHO05D008857 2.0e-42 177.2 157 58.0
Hma1.2p1_0496F.1_g166200 Hydrangea macrophylla HOM05D006979 ORTHO05D008857 4.5e-42 176.0 217 49.8
AagrBONN_evm.TU.Sc2ySwM_362.1497 Anthoceros agrestis HOM05D006979 ORTHO05D008857 2.3e-41 173.7 207 44.4
SMO117G0249 Selaginella moellendorffii HOM05D006979 ORTHO05D008857 3.0e-38 163.3 258 36.8
SEGI_25115 Sequoiadendron giganteum HOM05D006979 ORTHO05D008857 2.5e-32 143.7 126 57.9
Ah.08g216750 Amaranthus hybridus HOM05D006979 ORTHO05D008857 5.2e-30 136.0 152 51.3
Mapoly0030s0153 Marchantia polymorpha HOM05D006979 ORTHO05D008857 1.7e-25 120.9 145 46.9
MCO12G160 Micromonas commoda HOM05D006979 ORTHO05D008857 1.6e-18 97.8 276 31.5
CDE05G2075 Ceratophyllum demersum HOM05D006979 ORTHO05D008857 4.6e-18 96.3 193 32.6
Cre02.g095133 Chlamydomonas reinhardtii HOM05D006979 ORTHO05D008857 2.1e-10 70.9 291 28.9
RcHm_v2.0_Chr6g0307231 Rosa chinensis HOM05D006979 ORTHO05D008857 6.0e-10 69.3 52 67.3
Medtr8g019490 Medicago truncatula HOM05D006979 ORTHO05D008857 1.7e-09 67.8 101 39.6
RcHm_v2.0_Chr3g0497381 Rosa chinensis HOM05D006979 ORTHO05D008857 6.6e-09 65.9 52 63.5
C02p30170 Brassica napus HOM05D006979 ORTHO05D033722 4.7e-07 59.7 52 61.5
BolC2t09067H Brassica oleracea HOM05D006979 ORTHO05D033722 4.7e-07 59.7 52 61.5
PRCOL_00001479 Prasinoderma coloniale HOM05D006979 ORTHO05D008857 4.7e-07 59.7 124 30.6
SEGI_01007 Sequoiadendron giganteum HOM05D006655 ORTHO05D007986 8.9e-06 55.5 252 25.0


User provided reference genes

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