Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG4G2910 Aethionema arabicum HOM05D005576 ORTHO05D007010 0.0e+00 1934.5 989 100.0
Thhalv10018070m.g Eutrema salsugineum HOM05D005576 ORTHO05D007010 0.0e+00 1770.7 990 90.0
AT1G72560 Arabidopsis thaliana HOM05D005576 ORTHO05D007010 0.0e+00 1744.6 990 89.0
CARHR065500 Cardamine hirsuta HOM05D005576 ORTHO05D007010 0.0e+00 1724.1 990 87.8
THA.LOC104808055 Tarenaya hassleriana HOM05D005576 ORTHO05D007010 0.0e+00 1705.6 991 86.0
AL2G32250 Arabidopsis lyrata HOM05D005576 ORTHO05D007010 0.0e+00 1691.0 990 86.6
Sp5g27640 Schrenkiella parvula HOM05D005576 ORTHO05D007010 0.0e+00 1672.5 990 86.3
Carub.0002s1942 Capsella rubella HOM05D005576 ORTHO05D007010 0.0e+00 1669.4 990 85.3
BolC6t39733H Brassica oleracea HOM05D005576 ORTHO05D007010 0.0e+00 1611.7 993 82.7
C06p46920 Brassica napus HOM05D005576 ORTHO05D007010 0.0e+00 1608.6 993 82.4
A07p38760 Brassica napus HOM05D005576 ORTHO05D007010 0.0e+00 1606.3 992 82.4
BraA07t31429Z Brassica rapa HOM05D005576 ORTHO05D007010 0.0e+00 1598.6 993 82.2
THA.LOC104812251 Tarenaya hassleriana HOM05D005576 ORTHO05D007010 0.0e+00 1595.9 991 80.7
Atru.chr1.3999 Acer truncatum HOM05D005576 ORTHO05D007010 0.0e+00 1487.2 991 74.7
Dinv20428 Davidia involucrata HOM05D005576 ORTHO05D007010 0.0e+00 1486.1 970 76.3
Manes.11G019400 Manihot esculenta HOM05D005576 ORTHO05D007010 0.0e+00 1474.1 994 73.5
COL.COLO4_30746 Corchorus olitorius HOM05D005576 ORTHO05D007010 0.0e+00 1473.0 991 74.5
Actinidia26024 Actinidia chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1467.6 991 72.7
Haze_16039 Corylus avellana HOM05D005576 ORTHO05D007010 0.0e+00 1463.7 991 73.6
GSVIVG01016742001 Vitis vinifera HOM05D005576 ORTHO05D007010 0.0e+00 1463.4 994 73.8
PGSC0003DMG400022883 Solanum tuberosum HOM05D005576 ORTHO05D007010 0.0e+00 1462.6 992 73.6
Nitab4.5_0002898g0010 Nicotiana tabacum HOM05D005576 ORTHO05D007010 0.0e+00 1462.2 980 74.2
CAN.G668.41 Capsicum annuum HOM05D005576 ORTHO05D007010 0.0e+00 1461.4 991 73.8
Nitab4.5_0004422g0040 Nicotiana tabacum HOM05D005576 ORTHO05D007010 0.0e+00 1461.4 980 74.6
TAR626G1694 Trochodendron aralioides HOM05D005576 ORTHO05D007010 0.0e+00 1459.5 993 73.0
Sopen03g041140 Solanum pennellii HOM05D005576 ORTHO05D007010 0.0e+00 1458.4 992 73.4
Thecc.06G121300 Theobroma cacao HOM05D005576 ORTHO05D007010 0.0e+00 1456.8 991 74.3
Prupe.3G039600 Prunus persica HOM05D005576 ORTHO05D007010 0.0e+00 1455.7 991 73.8
QL05p004145 Quercus lobata HOM05D005576 ORTHO05D007010 0.0e+00 1453.7 991 72.8
Cc04_g01260 Coffea canephora HOM05D005576 ORTHO05D007010 0.0e+00 1450.6 992 72.7
TWI31G0259 Tripterygium wilfordii HOM05D005576 ORTHO05D007010 0.0e+00 1443.7 991 72.3
CiPaw.01G218000 Carya illinoinensis HOM05D005576 ORTHO05D007010 0.0e+00 1433.7 991 71.6
vmacro22036 Vaccinium macrocarpon HOM05D005576 ORTHO05D007010 0.0e+00 1432.2 993 72.0
RcHm_v2.0_Chr2g0145781 Rosa chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1431.8 986 72.5
Peaxi162Scf00038g02138 Petunia axillaris HOM05D005576 ORTHO05D007010 0.0e+00 1426.8 1074 68.2
Dinv37863 Davidia involucrata HOM05D005576 ORTHO05D007010 0.0e+00 1422.1 1016 71.2
Duzib235G0347 Durio zibethinus HOM05D005576 ORTHO05D007010 0.0e+00 1421.4 991 71.9
Lsat_1_v5_gn_4_93500 Lactuca sativa HOM05D005576 ORTHO05D007010 0.0e+00 1419.1 986 71.7
Nn8g38631 Nelumbo nucifera HOM05D005576 ORTHO05D007010 0.0e+00 1416.7 993 71.2
FvH4_6g34890 Fragaria vesca HOM05D005576 ORTHO05D007010 0.0e+00 1415.2 986 71.4
FAN09G4405 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1413.7 986 71.5
Gorai.011G059500 Gossypium raimondii HOM05D005576 ORTHO05D007010 0.0e+00 1413.7 991 72.3
Lalb_Chr15g0076791 Lupinus albus HOM05D005576 ORTHO05D007010 0.0e+00 1412.9 992 72.0
MD09G1181500 Malus domestica HOM05D005576 ORTHO05D007010 0.0e+00 1412.5 991 71.8
Rhsim12G0210100 Rhododendron simsii HOM05D005576 ORTHO05D007010 0.0e+00 1411.7 970 72.9
VMungo1309G3067 Vigna mungo HOM05D005576 ORTHO05D007010 0.0e+00 1406.7 992 71.8
HanXRQChr09g0276901 Helianthus annuus HOM05D005576 ORTHO05D007010 0.0e+00 1406.3 992 71.3
Aqoxy7G04073 Aquilegia oxysepala HOM05D005576 ORTHO05D007010 0.0e+00 1405.6 994 70.8
CANSAT56G3183 Cannabis sativa HOM05D005576 ORTHO05D007010 0.0e+00 1405.6 991 71.4
Sc15g0000400 Simmondsia chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1405.6 993 70.5
Potri.003G066200 Populus trichocarpa HOM05D005576 ORTHO05D007010 0.0e+00 1405.2 996 70.1
Gohir.A10G053800 Gossypium hirsutum HOM05D005576 ORTHO05D007010 0.0e+00 1404.0 991 71.8
Lalb_Chr04g0261101 Lupinus albus HOM05D005576 ORTHO05D007010 0.0e+00 1403.7 992 71.1
CiPaw.02G135100 Carya illinoinensis HOM05D005576 ORTHO05D007010 0.0e+00 1400.2 991 70.1
MD17G1167700 Malus domestica HOM05D005576 ORTHO05D007010 0.0e+00 1399.4 991 70.7
Ciclev10024809m.g Citrus clementina HOM05D005576 ORTHO05D007010 0.0e+00 1399.0 991 71.5
Nn6g35707 Nelumbo nucifera HOM05D005576 ORTHO05D007010 0.0e+00 1398.6 993 70.2
Potri.001G168100 Populus trichocarpa HOM05D005576 ORTHO05D007010 0.0e+00 1398.3 994 70.2
CSS0000574 Camellia sinensis var. sinensis HOM05D005576 ORTHO05D007010 0.0e+00 1396.3 995 70.6
Lj5C36G17 Lonicera japonica HOM05D005576 ORTHO05D007010 0.0e+00 1395.2 986 70.4
Glyma.19G263400 Glycine max HOM05D005576 ORTHO05D007010 0.0e+00 1394.4 991 71.5
ECA232G2029 Erigeron canadensis HOM05D005576 ORTHO05D007010 0.0e+00 1390.6 991 70.1
Lj1g0011724 Lotus japonicus HOM05D005576 ORTHO05D007010 0.0e+00 1383.6 991 70.0
ClCG09G001010 Citrullus lanatus HOM05D005576 ORTHO05D007010 0.0e+00 1380.9 1005 69.2
Ca_09568_v3 Cicer arietinum L. HOM05D005576 ORTHO05D007010 0.0e+00 1379.8 991 70.4
TPR.G28874 Trifolium pratense HOM05D005576 ORTHO05D007010 0.0e+00 1379.8 991 70.3
Migut.I01082 Erythranthe guttata HOM05D005576 ORTHO05D007010 0.0e+00 1378.6 993 70.0
Psat3g000040 Pisum sativum HOM05D005576 ORTHO05D007010 0.0e+00 1378.6 991 70.3
CsaV3_7G034420 Cucumis sativus L. HOM05D005576 ORTHO05D007010 0.0e+00 1378.2 992 69.3
Ah.08g216850 Amaranthus hybridus HOM05D005576 ORTHO05D007010 0.0e+00 1377.5 993 70.1
DCAR_026415 Daucus carota HOM05D005576 ORTHO05D007010 0.0e+00 1376.7 961 71.2
Sed0003060 Sechium edule HOM05D005576 ORTHO05D007010 0.0e+00 1375.9 992 69.5
MELO3C024350.2 Cucumis melo HOM05D005576 ORTHO05D007010 0.0e+00 1374.4 992 69.3
EL10Ac7g16417 Beta vulgaris HOM05D005576 ORTHO05D007010 0.0e+00 1368.6 994 69.6
PGR102G0536 Punica granatum HOM05D005576 ORTHO05D007010 0.0e+00 1365.9 998 70.3
Sabra03G0038700 Salix brachista HOM05D005576 ORTHO05D007010 0.0e+00 1365.5 964 70.3
Gohir.D10G055800 Gossypium hirsutum HOM05D005576 ORTHO05D007010 0.0e+00 1362.1 961 71.9
Oeu000412.2 Olea europaea HOM05D005576 ORTHO05D007010 0.0e+00 1352.4 993 69.2
MBI13_g12059_MAGBIO Magnolia biondii HOM05D005576 ORTHO05D007010 0.0e+00 1352.0 995 68.7
Medtr7g117565 Medicago truncatula HOM05D005576 ORTHO05D007010 0.0e+00 1345.9 996 68.4
SGA_v2.0_scaffold71G23839 Striga asiatica HOM05D005576 ORTHO05D007010 0.0e+00 1332.0 989 67.6
MSTRG.4792 Avicennia marina HOM05D005576 ORTHO05D007010 0.0e+00 1327.0 994 67.5
Glyma.03G264400 Glycine max HOM05D005576 ORTHO05D007010 0.0e+00 1326.2 992 68.5
Oeu015487.1 Olea europaea HOM05D005576 ORTHO05D007010 0.0e+00 1325.8 963 69.5
Duzib160G0875 Durio zibethinus HOM05D005576 ORTHO05D007010 0.0e+00 1320.1 994 68.6
Actinidia25327 Actinidia chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1314.3 896 71.7
PSO421G0066 Papaver somniferum HOM05D005576 ORTHO05D007010 0.0e+00 1312.7 1005 66.1
arahy.Tifrunner.gnm1.ann1.E27NE4 Arachis hypogaea HOM05D005576 ORTHO05D007010 0.0e+00 1302.7 996 66.6
FAN14G0396 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1297.7 912 71.4
SalBow6G0288 Salvia bowleyana HOM05D005576 ORTHO05D007010 0.0e+00 1297.7 980 66.3
SalBow6G5091 Salvia bowleyana HOM05D005576 ORTHO05D007010 0.0e+00 1297.7 980 66.3
FAN02G3375 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1296.6 986 66.9
arahy.Tifrunner.gnm1.ann1.W8MD5J Arachis hypogaea HOM05D005576 ORTHO05D007010 0.0e+00 1291.2 1026 64.9
MSTRG.10949 Avicennia marina HOM05D005576 ORTHO05D007010 0.0e+00 1278.1 993 65.6
PSO063G0826 Papaver somniferum HOM05D005576 ORTHO05D007010 0.0e+00 1271.9 999 64.9
Solyc03g122370.4 Solanum lycopersicum HOM05D005576 ORTHO05D007010 0.0e+00 1271.5 991 66.2
Hund18687 Selenicereus undatus HOM05D005576 ORTHO05D007010 0.0e+00 1255.4 940 69.0
AUR62001476 Chenopodium quinoa HOM05D005576 ORTHO05D007010 0.0e+00 1227.6 963 64.5
ATR0598G079 Amborella trichopoda HOM05D005576 ORTHO05D007010 0.0e+00 1217.6 972 62.1
CDE05G1788 Ceratophyllum demersum HOM05D005576 ORTHO05D007010 0.0e+00 1207.2 992 61.4
Lj9A532T67 Lonicera japonica HOM05D005576 ORTHO05D007010 0.0e+00 1182.5 912 67.0
Oeu015486.1 Olea europaea HOM05D005576 ORTHO05D007010 0.0e+00 1160.2 863 68.9
AUR62009889 Chenopodium quinoa HOM05D005576 ORTHO05D007010 0.0e+00 1112.8 998 58.5
CDE11G0151 Ceratophyllum demersum HOM05D005576 ORTHO05D007010 3.2e-304 1048.5 993 55.5
Phvul.009G263000 Phaseolus vulgaris HOM05D005576 ORTHO05D007010 2.0e-298 1029.2 725 72.7
Eucgr.F04406 Eucalyptus grandis HOM05D005576 ORTHO05D007010 2.6e-290 1002.3 912 58.9
Pp3c12_21910 Physcomitrium patens HOM05D005576 ORTHO05D007010 3.8e-281 971.8 996 49.2
Mapoly0019s0146 Marchantia polymorpha HOM05D005576 ORTHO05D007010 2.5e-280 969.1 994 49.7
Zm00001eb109040 Zea mays HOM05D005576 ORTHO05D007010 2.0e-277 959.5 1001 50.1
Zm00001eb327340 Zea mays HOM05D005576 ORTHO05D007010 4.4e-277 958.4 1001 50.3
Os07g0613300 Oryza sativa ssp. japonica HOM05D005576 ORTHO05D007010 6.5e-273 944.5 1003 50.7
unitig_899.g14764 Utricularia gibba HOM05D005576 ORTHO05D007010 1.7e-257 893.3 843 56.6
Actinidia27733 Actinidia chinensis HOM05D005576 ORTHO05D007010 8.6e-257 891.0 612 71.7
SMO141G0108 Selaginella moellendorffii HOM05D005576 ORTHO05D007010 1.2e-253 880.6 986 46.5
Actinidia26822 Actinidia chinensis HOM05D005576 ORTHO05D007010 2.9e-252 875.9 599 72.0
HPP92_026306 Vanilla planifolia HOM05D005576 ORTHO05D007010 3.3e-248 862.4 744 60.1
FAN05G3283 Fragaria x ananassa HOM05D005576 ORTHO05D007010 1.0e-241 840.9 607 70.5
SEGI_13199 Sequoiadendron giganteum HOM05D005576 ORTHO05D007010 4.3e-240 835.5 808 53.0
AagrBONN_evm.TU.Sc2ySwM_344.1866 Anthoceros agrestis HOM05D005576 ORTHO05D007010 2.4e-211 740.0 912 43.3
CBR_g44922 Chara braunii HOM05D005576 ORTHO05D007010 3.0e-209 733.0 1084 38.4
Aa31LG4G2950 Aethionema arabicum HOM05D005576 ORTHO05D007010 2.7e-194 683.3 354 98.6
Cpa.g.sc589.4 Carica papaya HOM05D005576 ORTHO05D007010 2.2e-191 673.7 427 78.0
Dinv20426 Davidia involucrata HOM05D005576 ORTHO05D007010 6.3e-143 512.7 305 78.7
Cpa.g.sc1732.1 Carica papaya HOM05D005576 ORTHO05D007010 1.3e-140 505.0 308 78.9
Cre12.g496200 Chlamydomonas reinhardtii HOM05D005576 ORTHO05D007010 1.3e-124 451.8 1194 29.0
Actinidia26823 Actinidia chinensis HOM05D005576 ORTHO05D007010 2.4e-89 334.7 264 62.5
Actinidia27734 Actinidia chinensis HOM05D005576 ORTHO05D007010 2.4e-89 334.7 264 62.5
MCO02G354 Micromonas commoda HOM05D005576 ORTHO05D007010 2.9e-79 301.2 1078 26.9
HPP92_026305 Vanilla planifolia HOM05D005576 ORTHO05D007010 1.0e-55 223.0 240 47.9
PRCOL_00005439 Prasinoderma coloniale HOM05D005576 ORTHO05D007010 7.7e-40 170.2 973 22.4
BcaB05g24764 Brassica carinata HOM05D005576 ORTHO05D007010 1.9e-38 165.6 123 74.0
C02p30110 Brassica napus HOM05D005576 ORTHO05D007010 5.5e-38 164.1 145 59.3
BolC2t09060H Brassica oleracea HOM05D005576 ORTHO05D007010 7.0e-33 147.1 144 56.2
unitig_899.g14765 Utricularia gibba HOM05D005576 ORTHO05D007010 6.1e-29 134.0 108 63.0
BcaB05g24763 Brassica carinata HOM05D000046 ORTHO05D000457 2.6e-27 128.6 85 74.1
SalBow5G4342 Salvia bowleyana HOM05D003448 ORTHO05D004028 6.2e-13 80.9 65 61.5
A02p18080 Brassica napus HOM05D005576 ORTHO05D041195 7.5e-11 73.9 45 84.4
BraA02t06855Z Brassica rapa HOM05D005576 ORTHO05D041195 7.5e-11 73.9 45 84.4


User provided reference genes

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