Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG4G2550 Aethionema arabicum HOM05D004022 ORTHO05D004090 5.1e-43 177.6 104 100.0
AL2G38780 Arabidopsis lyrata HOM05D004022 ORTHO05D004090 3.4e-23 111.7 115 61.7
AT1G78410 Arabidopsis thaliana HOM05D004022 ORTHO05D004090 1.3e-22 109.8 111 66.7
Thhalv10019550m.g Eutrema salsugineum HOM05D004022 ORTHO05D004090 1.7e-22 109.4 114 67.5
Sp5g33510 Schrenkiella parvula HOM05D004022 ORTHO05D004090 2.9e-22 108.6 114 65.8
Carub.0002s2531 Capsella rubella HOM05D004022 ORTHO05D004090 6.5e-22 107.5 115 64.3
A02p22170 Brassica napus HOM05D004022 ORTHO05D004090 3.2e-21 105.1 113 61.9
BraA02t07221Z Brassica rapa HOM05D004022 ORTHO05D004090 3.2e-21 105.1 113 61.9
BcaB05g25138 Brassica carinata HOM05D004022 ORTHO05D004090 4.2e-21 104.8 113 58.4
BcaC03g15811 Brassica carinata HOM05D004022 ORTHO05D004090 4.2e-21 104.8 113 61.9
C02p35580 Brassica napus HOM05D004022 ORTHO05D004090 9.3e-21 103.6 113 61.1
BcaC08g45417 Brassica carinata HOM05D004022 ORTHO05D004090 1.2e-20 103.2 110 58.2
C06p30490 Brassica napus HOM05D004022 ORTHO05D004090 1.2e-20 103.2 110 58.2
BolC6t38212H Brassica oleracea HOM05D004022 ORTHO05D004090 1.2e-20 103.2 110 58.2
A07p27550 Brassica napus HOM05D004022 ORTHO05D004090 1.6e-20 102.8 110 58.2
A07p43670 Brassica napus HOM05D004022 ORTHO05D004090 1.6e-20 102.8 109 59.6
BraA07t30397Z Brassica rapa HOM05D004022 ORTHO05D004090 1.6e-20 102.8 110 58.2
BcaC08g47415 Brassica carinata HOM05D004022 ORTHO05D004090 6.1e-20 100.9 109 58.7
BraA07t31879Z Brassica rapa HOM05D004022 ORTHO05D004090 7.9e-20 100.5 109 58.7
BolC6t40255H Brassica oleracea HOM05D004022 ORTHO05D004090 3.0e-19 98.6 109 58.7
BcaB03g16016 Brassica carinata HOM05D004022 ORTHO05D004090 2.5e-18 95.5 109 56.9
BolC2t09573H Brassica oleracea HOM05D004022 ORTHO05D004090 5.7e-18 94.4 108 60.2
BcaB02g07170 Brassica carinata HOM05D004022 ORTHO05D004090 9.7e-18 93.6 109 56.9
C06p52350 Brassica napus HOM05D004022 ORTHO05D004090 4.1e-16 88.2 77 67.5
THA.LOC104813977 Tarenaya hassleriana HOM05D004022 ORTHO05D004090 1.5e-15 86.3 104 51.0
AT1G17147 Arabidopsis thaliana HOM05D004022 ORTHO05D004090 1.3e-14 83.2 101 48.5
CARHR017720 Cardamine hirsuta HOM05D004022 ORTHO05D004090 1.3e-14 83.2 101 49.5
CARHR071930 Cardamine hirsuta HOM05D004022 ORTHO05D004090 1.3e-14 83.2 61 75.4
BolC5t30263H Brassica oleracea HOM05D004022 ORTHO05D004090 3.8e-14 81.6 101 49.5
C05p15530 Brassica napus HOM05D004022 ORTHO05D004090 5.0e-14 81.3 101 49.5
BcaB07g34047 Brassica carinata HOM05D004022 ORTHO05D004090 6.5e-14 80.9 101 48.5
BcaC05g25663 Brassica carinata HOM05D004022 ORTHO05D004090 6.5e-14 80.9 101 49.5
AL1G29370 Arabidopsis lyrata HOM05D004022 ORTHO05D004090 1.1e-13 80.1 101 48.5
Aa31LG7G1990 Aethionema arabicum HOM05D004022 ORTHO05D004090 2.1e-12 75.9 114 46.5
Carub.0001s1689 Capsella rubella HOM05D004022 ORTHO05D004090 2.1e-12 75.9 101 47.5
Sp1g15290 Schrenkiella parvula HOM05D004022 ORTHO05D004090 2.1e-12 75.9 101 44.6
BcaC07g38833 Brassica carinata HOM05D004022 ORTHO05D004090 2.7e-12 75.5 101 43.6
C08p17730 Brassica napus HOM05D004022 ORTHO05D004090 2.7e-12 75.5 101 43.6
A08p31100 Brassica napus HOM05D004022 ORTHO05D004090 3.6e-12 75.1 101 42.6
BraA08t35036Z Brassica rapa HOM05D004022 ORTHO05D004090 3.6e-12 75.1 101 42.6
A06p13050 Brassica napus HOM05D004022 ORTHO05D004090 4.6e-12 74.7 100 52.0
BraA06t24464Z Brassica rapa HOM05D004022 ORTHO05D004090 6.1e-12 74.3 100 51.0
BolC8t49399H Brassica oleracea HOM05D004022 ORTHO05D004090 5.1e-11 71.2 100 42.0
THA.LOC104812289 Tarenaya hassleriana HOM05D004022 ORTHO05D004090 8.8e-11 70.5 106 50.0
Thhalv10009187m.g Eutrema salsugineum HOM05D004022 ORTHO05D004090 2.5e-10 68.9 40 77.5
BcaB03g13015 Brassica carinata HOM05D004022 ORTHO05D004090 3.3e-10 68.6 80 47.5
Eucgr.F01407 Eucalyptus grandis HOM05D004022 ORTHO05D004090 1.5e-07 59.7 49 63.3
Eucgr.F01408 Eucalyptus grandis HOM05D004022 ORTHO05D004090 2.6e-07 58.9 52 61.5
Actinidia35177 Actinidia chinensis HOM05D004022 ORTHO05D004090 3.4e-07 58.5 59 54.2
COL.COLO4_17416 Corchorus olitorius HOM05D004022 ORTHO05D004090 3.4e-07 58.5 39 71.8
Thecc.07G146700 Theobroma cacao HOM05D004022 ORTHO05D004090 3.4e-07 58.5 41 70.7
TAR627G0510 Trochodendron aralioides HOM05D004022 ORTHO05D004090 3.4e-07 58.5 46 63.0
Haze_08493 Corylus avellana HOM05D004022 ORTHO05D004090 4.5e-07 58.2 62 56.5
Migut.M00651 Erythranthe guttata HOM05D004022 ORTHO05D004090 4.5e-07 58.2 49 63.3
Peaxi162Scf00111g00083 Petunia axillaris HOM05D004022 ORTHO05D004090 4.5e-07 58.2 70 45.7
Duzib213G0178 Durio zibethinus HOM05D004022 ORTHO05D004090 5.9e-07 57.8 68 47.1
Migut.M00648 Erythranthe guttata HOM05D004022 ORTHO05D004090 5.9e-07 57.8 37 78.4
arahy.Tifrunner.gnm1.ann1.I20P02 Arachis hypogaea HOM05D004022 ORTHO05D004090 7.7e-07 57.4 43 69.8
CSS0009778 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 7.7e-07 57.4 61 49.2
Migut.M00652 Erythranthe guttata HOM05D004022 ORTHO05D004090 7.7e-07 57.4 47 59.6
CSS0046120 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 1.0e-06 57.0 60 50.0
Gohir.D01G029300 Gossypium hirsutum HOM05D004022 ORTHO05D004090 1.0e-06 57.0 42 64.3
Gorai.002G038600 Gossypium raimondii HOM05D004022 ORTHO05D004090 1.0e-06 57.0 42 64.3
Sopen07g029950 Solanum pennellii HOM05D004022 ORTHO05D004090 1.0e-06 57.0 62 53.2
arahy.Tifrunner.gnm1.ann1.NFB54Z Arachis hypogaea HOM05D004022 ORTHO05D004090 1.3e-06 56.6 43 69.8
EL10Ac9g22063 Beta vulgaris HOM05D004022 ORTHO05D004090 1.3e-06 56.6 43 67.4
AUR62012877 Chenopodium quinoa HOM05D004022 ORTHO05D004090 1.3e-06 56.6 73 47.9
QL04p070411 Quercus lobata HOM05D004022 ORTHO05D004090 1.3e-06 56.6 48 64.6
QL04p070436 Quercus lobata HOM05D004022 ORTHO05D004090 1.3e-06 56.6 48 64.6
Sc03g0007740 Simmondsia chinensis HOM05D004022 ORTHO05D004090 1.3e-06 56.6 70 50.0
Solyc07g056600.1 Solanum lycopersicum HOM05D004022 ORTHO05D004090 1.3e-06 56.6 62 50.0
Glyma.08G176500 Glycine max HOM05D004022 ORTHO05D004090 1.7e-06 56.2 34 76.5
Lalb_Chr25g0285381 Lupinus albus HOM05D004022 ORTHO05D004090 1.7e-06 56.2 43 69.8
Duzib268G0389 Durio zibethinus HOM05D004022 ORTHO05D004090 2.2e-06 55.8 40 72.5
RhsimUnG0204300 Rhododendron simsii HOM05D004022 ORTHO05D004090 2.2e-06 55.8 54 51.9
unitig_899.g15299 Utricularia gibba HOM05D004022 ORTHO05D004090 2.2e-06 55.8 39 69.2
CANSAT56G3333 Cannabis sativa HOM05D004022 ORTHO05D004090 2.9e-06 55.5 51 58.8
AUR62027101 Chenopodium quinoa HOM05D004022 ORTHO05D004090 2.9e-06 55.5 73 46.6
DCAR_021057 Daucus carota HOM05D004022 ORTHO05D004090 2.9e-06 55.5 48 60.4
Glyma.15G249800 Glycine max HOM05D004022 ORTHO05D004090 2.9e-06 55.5 34 76.5
Nitab4.5_0000505g0120 Nicotiana tabacum HOM05D004022 ORTHO05D004090 2.9e-06 55.5 57 57.9
ECA236G3547 Erigeron canadensis HOM05D004022 ORTHO05D004090 3.8e-06 55.1 69 50.7
Phvul.005G051400 Phaseolus vulgaris HOM05D004022 ORTHO05D004090 3.8e-06 55.1 34 76.5
PGR083G0572 Punica granatum HOM05D004022 ORTHO05D004090 3.8e-06 55.1 33 78.8
CAN.G262.11 Capsicum annuum HOM05D004022 ORTHO05D004090 5.0e-06 54.7 37 67.6
Gohir.A04G046900 Gossypium hirsutum HOM05D004022 ORTHO05D004090 5.0e-06 54.7 32 75.0
SalBow8G0217 Salvia bowleyana HOM05D004022 ORTHO05D004090 5.0e-06 54.7 47 63.8
Ca_03390_v3 Cicer arietinum L. HOM05D004022 ORTHO05D004090 6.5e-06 54.3 39 66.7
FvH4_3g16620 Fragaria vesca HOM05D004022 ORTHO05D004090 6.5e-06 54.3 64 51.6
FAN11G3697 Fragaria x ananassa HOM05D004022 ORTHO05D004090 6.5e-06 54.3 64 51.6
FAN16G3013 Fragaria x ananassa HOM05D004022 ORTHO05D004090 6.5e-06 54.3 46 63.0
FAN21G1087 Fragaria x ananassa HOM05D004022 ORTHO05D004090 6.5e-06 54.3 64 51.6
QL04p070376 Quercus lobata HOM05D004022 ORTHO05D004090 6.5e-06 54.3 48 62.5
RcHm_v2.0_Chr5g0027761 Rosa chinensis HOM05D004022 ORTHO05D004090 6.5e-06 54.3 78 44.9
unitig_746.g26690 Utricularia gibba HOM05D004022 ORTHO05D004090 6.5e-06 54.3 41 68.3
FAN25G3340 Fragaria x ananassa HOM05D004022 ORTHO05D004090 8.5e-06 53.9 63 52.4
Gohir.D05G333300 Gossypium hirsutum HOM05D004022 ORTHO05D004090 8.5e-06 53.9 32 75.0
Medtr2g070550 Medicago truncatula HOM05D004022 ORTHO05D004090 8.5e-06 53.9 34 73.5
PGSC0003DMG400027649 Solanum tuberosum HOM05D004022 ORTHO05D004090 8.5e-06 53.9 60 48.3


User provided reference genes

Program Settings