Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG4G2430 Aethionema arabicum HOM05D005685 ORTHO05D007046 0.0e+00 1242.6 618 100.0
Sp5g33630 Schrenkiella parvula HOM05D005685 ORTHO05D007046 1.3e-271 939.5 647 73.3
Thhalv10018251m.g Eutrema salsugineum HOM05D005685 ORTHO05D007046 2.7e-269 931.8 634 74.1
THA.LOC104808083 Tarenaya hassleriana HOM05D005685 ORTHO05D007046 1.2e-261 906.4 657 69.7
Thhalv10006979m.g Eutrema salsugineum HOM05D005685 ORTHO05D007046 4.0e-260 901.4 650 68.9
AT1G78540 Arabidopsis thaliana HOM05D005685 ORTHO05D007046 3.4e-259 898.3 655 70.7
Sp1g15160 Schrenkiella parvula HOM05D005685 ORTHO05D007046 4.8e-258 894.4 649 69.2
CARHR072030 Cardamine hirsuta HOM05D005685 ORTHO05D007046 6.1e-253 877.5 650 69.8
AL7G51000 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 7.0e-249 864.0 653 67.4
AT1G17040 Arabidopsis thaliana HOM05D005685 ORTHO05D007046 4.5e-248 861.3 626 69.5
CARHR017570 Cardamine hirsuta HOM05D005685 ORTHO05D007046 1.3e-247 859.8 665 66.6
Carub.0002s2539 Capsella rubella HOM05D005685 ORTHO05D007046 2.3e-247 859.0 654 68.7
Carub.0001s1676 Capsella rubella HOM05D005685 ORTHO05D007046 2.1e-245 852.4 648 66.5
BraA06t24453Z Brassica rapa HOM05D005685 ORTHO05D007046 4.9e-242 841.3 645 65.0
C05p15360 Brassica napus HOM05D005685 ORTHO05D007046 3.2e-241 838.6 648 64.8
A06p12940 Brassica napus HOM05D005685 ORTHO05D007046 1.6e-240 836.3 645 64.8
BolC5t30242H Brassica oleracea HOM05D005685 ORTHO05D007046 4.7e-237 824.7 675 62.4
Aa31LG7G1870 Aethionema arabicum HOM05D005685 ORTHO05D007046 2.3e-236 822.4 645 66.4
AL2G38940 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 3.3e-230 802.0 596 70.5
Cpa.g.sc77.65 Carica papaya HOM05D005685 ORTHO05D007046 3.1e-220 768.8 659 60.5
AL1G29220 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 1.3e-215 753.4 578 67.1
Haze_08449 Corylus avellana HOM05D005685 ORTHO05D007046 1.1e-182 644.0 687 51.2
GSVIVG01014072001 Vitis vinifera HOM05D005685 ORTHO05D007046 5.3e-180 635.2 616 53.6
Lj1g0015970 Lotus japonicus HOM05D005685 ORTHO05D007046 3.2e-177 625.9 673 48.7
Lalb_Chr19g0133681 Lupinus albus HOM05D005685 ORTHO05D007046 3.6e-176 622.5 681 49.2
BcaC05g25679 Brassica carinata HOM05D005685 ORTHO05D007046 4.6e-176 622.1 503 62.8
Dinv13349 Davidia involucrata HOM05D005685 ORTHO05D007046 4.6e-176 622.1 684 48.5
VMungo1127G1789 Vigna mungo HOM05D005685 ORTHO05D007046 1.5e-174 617.1 674 48.8
Ciclev10019120m.g Citrus clementina HOM05D005685 ORTHO05D007046 3.3e-174 615.9 669 49.2
Manes.03G084500 Manihot esculenta HOM05D005685 ORTHO05D007046 7.4e-174 614.8 671 50.1
Phvul.011G173500 Phaseolus vulgaris HOM05D005685 ORTHO05D007046 1.3e-173 614.0 682 48.7
Actinidia12613 Actinidia chinensis HOM05D005685 ORTHO05D007046 1.2e-171 607.4 676 47.0
CiPaw.11G154400 Carya illinoinensis HOM05D005685 ORTHO05D007046 1.3e-170 604.0 673 48.9
Hma1.2p1_0713F.1_g207810 Hydrangea macrophylla HOM05D005685 ORTHO05D007046 1.3e-170 604.0 687 47.3
Prupe.4G154100 Prunus persica HOM05D005685 ORTHO05D007046 2.9e-170 602.8 665 48.3
Gohir.A11G290000 Gossypium hirsutum HOM05D005685 ORTHO05D007046 5.5e-169 598.6 669 50.4
Gohir.D11G302400 Gossypium hirsutum HOM05D005685 ORTHO05D007046 7.9e-168 594.7 669 50.5
Atru.chr2.1911 Acer truncatum HOM05D005685 ORTHO05D007046 2.3e-167 593.2 676 47.5
CSS0007667 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 3.3e-166 589.3 689 46.6
CsaV3_4G032730 Cucumis sativus L. HOM05D005685 ORTHO05D007046 5.7e-166 588.6 683 47.4
Gorai.007G332400 Gossypium raimondii HOM05D005685 ORTHO05D007046 2.8e-165 586.3 669 50.1
CANSAT56G0504 Cannabis sativa HOM05D005685 ORTHO05D007046 8.2e-165 584.7 682 46.9
FvH4_3g17370 Fragaria vesca HOM05D005685 ORTHO05D007046 1.4e-164 583.9 651 48.7
FAN25G1369 Fragaria x ananassa HOM05D005685 ORTHO05D007046 1.4e-164 583.9 651 49.0
BcaB02g06680 Brassica carinata HOM05D005685 ORTHO05D007046 5.3e-164 582.0 461 65.1
ClCG11G017070 Citrullus lanatus HOM05D005685 ORTHO05D007046 5.3e-164 582.0 678 47.2
MD11G1273300 Malus domestica HOM05D005685 ORTHO05D007046 1.2e-163 580.9 677 47.7
Nn1g00647 Nelumbo nucifera HOM05D005685 ORTHO05D007046 2.0e-163 580.1 690 47.5
Medtr8g461480 Medicago truncatula HOM05D005685 ORTHO05D007046 1.4e-161 573.9 668 46.6
Psat4g139160 Pisum sativum HOM05D005685 ORTHO05D007046 1.4e-161 573.9 686 45.3
TAR605G0002 Trochodendron aralioides HOM05D005685 ORTHO05D007046 1.4e-161 573.9 684 46.3
Potri.001G380900 Populus trichocarpa HOM05D005685 ORTHO05D007046 1.4e-159 567.4 674 47.9
PGR031G3876 Punica granatum HOM05D005685 ORTHO05D007046 3.9e-159 565.8 674 46.4
Thecc.07G137700 Theobroma cacao HOM05D005685 ORTHO05D007046 5.2e-159 565.5 606 51.8
Sed0016294 Sechium edule HOM05D005685 ORTHO05D007046 8.8e-159 564.7 679 45.9
FAN21G3337 Fragaria x ananassa HOM05D005685 ORTHO05D007046 5.7e-158 562.0 697 45.8
PSO063G4015 Papaver somniferum HOM05D005685 ORTHO05D007046 5.3e-156 555.4 668 45.7
Sabra16G0251100 Salix brachista HOM05D005685 ORTHO05D007046 1.2e-155 554.3 697 46.5
TPR.G16474 Trifolium pratense HOM05D005685 ORTHO05D007046 2.6e-155 553.1 647 46.7
PSO782G3742 Papaver somniferum HOM05D005685 ORTHO05D007046 1.0e-154 551.2 668 45.5
Sabra11G0083400 Salix brachista HOM05D005685 ORTHO05D007046 1.0e-154 551.2 681 47.4
Cc05_g10550 Coffea canephora HOM05D005685 ORTHO05D007046 6.5e-154 548.5 684 43.9
RhsimUnG0165000 Rhododendron simsii HOM05D005685 ORTHO05D007046 1.1e-153 547.7 625 46.7
MELO3C016678.2 Cucumis melo HOM05D005685 ORTHO05D007046 2.5e-153 546.6 753 42.4
RhsimUnG0224400 Rhododendron simsii HOM05D005685 ORTHO05D007046 2.5e-153 546.6 724 42.5
Potri.011G102100 Populus trichocarpa HOM05D005685 ORTHO05D007046 5.5e-153 545.4 675 47.3
DCAR_017584 Daucus carota HOM05D005685 ORTHO05D007046 1.6e-152 543.9 689 44.3
FAN16G1001 Fragaria x ananassa HOM05D005685 ORTHO05D007046 4.7e-152 542.3 651 46.5
EL10Ac4g08448 Beta vulgaris HOM05D005685 ORTHO05D007046 5.7e-150 535.4 682 44.3
Migut.M00685 Erythranthe guttata HOM05D005685 ORTHO05D007046 1.7e-149 533.9 660 44.8
MSTRG.14992 Avicennia marina HOM05D005685 ORTHO05D007046 4.1e-148 529.3 688 42.3
Sc03g0010780 Simmondsia chinensis HOM05D005685 ORTHO05D007046 2.0e-147 526.9 679 43.0
Duzib213G0171 Durio zibethinus HOM05D005685 ORTHO05D007046 3.5e-147 526.2 668 45.5
HanXRQChr10g0305611 Helianthus annuus HOM05D005685 ORTHO05D007046 5.5e-145 518.8 677 43.3
Sopen07g030310 Solanum pennellii HOM05D005685 ORTHO05D007046 3.6e-144 516.2 679 41.2
SGA_v2.0_scaffold73G24373 Striga asiatica HOM05D005685 ORTHO05D007046 8.0e-144 515.0 672 43.3
SalBow8G2073 Salvia bowleyana HOM05D005685 ORTHO05D007046 1.0e-143 514.6 708 41.7
Solyc07g062050.3 Solanum lycopersicum HOM05D005685 ORTHO05D007046 1.0e-143 514.6 671 41.3
RhsimUnG0060100 Rhododendron simsii HOM05D005685 ORTHO05D007046 2.3e-143 513.5 624 44.9
Lsat_1_v5_gn_5_126281 Lactuca sativa HOM05D005685 ORTHO05D007046 2.6e-142 510.0 677 41.4
Peaxi162Scf00111g01236 Petunia axillaris HOM05D005685 ORTHO05D007046 3.4e-142 509.6 672 40.8
Aqoxy4G01266 Aquilegia oxysepala HOM05D005685 ORTHO05D007046 1.7e-141 507.3 687 41.3
Ca_12745_v3 Cicer arietinum L. HOM05D005685 ORTHO05D007046 2.7e-139 500.0 632 45.1
CAN.G375.61 Capsicum annuum HOM05D005685 ORTHO05D007046 4.5e-139 499.2 671 40.4
COL.COLO4_17454 Corchorus olitorius HOM05D005685 ORTHO05D007046 5.7e-134 482.3 676 43.8
Cfa019501 Carpinus fangiana HOM05D005685 ORTHO05D007046 2.8e-128 463.4 525 49.5
Nitab4.5_0001140g0120 Nicotiana tabacum HOM05D005685 ORTHO05D007046 8.0e-128 461.8 671 39.5
Ah.03g134490 Amaranthus hybridus HOM05D005685 ORTHO05D007046 5.2e-127 459.1 684 39.6
vmacro11986 Vaccinium macrocarpon HOM05D005685 ORTHO05D007046 5.2e-127 459.1 678 40.0
AUR62013935 Chenopodium quinoa HOM05D005685 ORTHO05D007046 6.8e-127 458.8 659 40.1
AUR62019678 Chenopodium quinoa HOM05D005685 ORTHO05D007046 1.5e-126 457.6 682 39.4
Lj1C822G13 Lonicera japonica HOM05D005685 ORTHO05D007046 2.0e-126 457.2 628 41.6
ATR0665G442 Amborella trichopoda HOM05D005685 ORTHO05D007046 4.1e-124 449.5 678 39.5
Zm00001eb004590 Zea mays HOM05D005685 ORTHO05D007046 2.7e-123 446.8 641 40.1
PGSC0003DMG400007083 Solanum tuberosum HOM05D005685 ORTHO05D007046 1.2e-120 438.0 731 35.3
unitig_747.g21593 Utricularia gibba HOM05D005685 ORTHO05D007046 1.2e-120 438.0 639 40.4
ECA234G1223 Erigeron canadensis HOM05D005685 ORTHO05D007046 2.7e-115 420.2 648 39.7
BraA06t26874Z Brassica rapa HOM05D005685 ORTHO05D007046 5.2e-111 406.0 315 64.8
SMO351G0414 Selaginella moellendorffii HOM05D005685 ORTHO05D007046 5.6e-105 386.0 627 37.6
Glyma.15G211900 Glycine max HOM05D005685 ORTHO05D007046 1.4e-103 381.3 509 45.6
DCAR_013783 Daucus carota HOM05D005685 ORTHO05D007046 1.9e-100 370.9 616 35.9
AagrBONN_evm.TU.Sc2ySwM_228.1006 Anthoceros agrestis HOM05D005685 ORTHO05D007046 1.6e-99 367.9 736 33.8
Pp3c20_21160 Physcomitrium patens HOM05D005685 ORTHO05D007046 3.5e-99 366.7 739 32.9
arahy.Tifrunner.gnm1.ann1.4M0U4E Arachis hypogaea HOM05D005685 ORTHO05D007046 6.9e-95 352.4 513 42.3
arahy.Tifrunner.gnm1.ann1.TIF1LK Arachis hypogaea HOM05D005685 ORTHO05D007046 6.9e-95 352.4 513 42.5
Nitab4.5_0003618g0060 Nicotiana tabacum HOM05D005685 ORTHO05D007046 1.7e-90 337.8 688 32.1
Mapoly0011s0171 Marchantia polymorpha HOM05D005685 ORTHO05D007046 5.1e-90 336.3 706 33.0
SEGI_25985 Sequoiadendron giganteum HOM05D005685 ORTHO05D007046 2.1e-88 330.9 632 33.7
FAN11G3672 Fragaria x ananassa HOM05D005685 ORTHO05D007046 2.4e-87 327.4 477 41.9
HPP92_014870 Vanilla planifolia HOM05D005685 ORTHO05D007046 3.0e-82 310.5 618 33.5
CSS0011531 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 8.7e-82 308.9 412 43.0
Eucgr.F03221 Eucalyptus grandis HOM05D005685 ORTHO05D007046 4.3e-81 306.6 367 45.0
RcHm_v2.0_Chr5g0028891 Rosa chinensis HOM05D005685 ORTHO05D007046 3.7e-80 303.5 248 58.1
TWI38G0887 Tripterygium wilfordii HOM05D005685 ORTHO05D007046 1.2e-78 298.5 223 60.5
CDE04G2909 Ceratophyllum demersum HOM05D005685 ORTHO05D007046 6.7e-66 256.1 463 37.8
RhsimUnG0062900 Rhododendron simsii HOM05D005685 ORTHO05D007046 2.5e-65 254.2 442 37.3
Glyma.15G212100 Glycine max HOM05D005685 ORTHO05D007046 1.2e-62 245.4 188 60.1
Os10g0567300 Oryza sativa ssp. japonica HOM05D005685 ORTHO05D007046 2.7e-59 234.2 240 45.0
Eucgr.F03222 Eucalyptus grandis HOM05D005685 ORTHO05D007046 8.2e-56 222.6 338 40.2
CSS0047371 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 1.0e-42 179.1 119 65.5
CDE04G0489 Ceratophyllum demersum HOM05D005685 ORTHO05D007046 1.9e-36 158.3 274 34.7
MBI19_g17443_MAGBIO Magnolia biondii HOM05D005685 ORTHO05D007046 1.1e-23 115.9 96 61.5
Zm00001eb210210 Zea mays HOM05D005685 ORTHO05D007046 2.8e-19 101.3 156 41.0
A08p10430 Brassica napus HOM05D005685 ORTHO05D007046 9.8e-17 92.8 99 51.5
SEGI_34067 Sequoiadendron giganteum HOM05D005685 ORTHO05D007046 2.8e-11 74.7 129 37.2
Pp3c7_2410 Physcomitrium patens HOM05D005685 ORTHO05D007046 3.6e-11 74.3 186 31.7
Mapoly0028s0082 Marchantia polymorpha HOM05D005685 ORTHO05D007046 6.1e-11 73.6 133 37.6
SMO145G0004 Selaginella moellendorffii HOM05D005685 ORTHO05D007046 1.8e-10 72.0 149 36.2
CBR_g19551 Chara braunii HOM05D005685 ORTHO05D007046 4.0e-10 70.9 147 36.1
CSS0003149 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 7.5e-09 66.6 77 44.2


User provided reference genes

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