Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG4G2320 Aethionema arabicum HOM05D002452 ORTHO05D006766 1.7e-302 1042.0 561 100.0
Sp5g33730 Schrenkiella parvula HOM05D002452 ORTHO05D006766 2.1e-167 593.2 567 62.8
Thhalv10018425m.g Eutrema salsugineum HOM05D002452 ORTHO05D006766 2.6e-165 586.3 569 63.1
AL2G39060 Arabidopsis lyrata HOM05D002452 ORTHO05D006766 3.7e-164 582.4 569 61.7
Carub.0002s2550 Capsella rubella HOM05D002452 ORTHO05D006766 4.0e-158 562.4 569 61.0
CARHR072180 Cardamine hirsuta HOM05D002452 ORTHO05D006766 2.0e-157 560.1 566 61.8
AT1G78650 Arabidopsis thaliana HOM05D002452 ORTHO05D006766 5.7e-149 531.9 490 63.3
BcaC08g47423 Brassica carinata HOM05D002452 ORTHO05D006766 7.5e-141 505.0 563 57.7
BcaC08g47422 Brassica carinata HOM05D002452 ORTHO05D006766 6.4e-140 501.9 564 57.6
BraA07t31897Z Brassica rapa HOM05D002452 ORTHO05D006766 2.7e-138 496.5 565 57.3
A07p43910 Brassica napus HOM05D002452 ORTHO05D006766 4.6e-138 495.7 565 57.3
C06p52530 Brassica napus HOM05D002452 ORTHO05D006585 8.6e-137 491.5 527 58.8
BolC6t40272H Brassica oleracea HOM05D002452 ORTHO05D006585 8.6e-137 491.5 527 58.8
THA.LOC104808089 Tarenaya hassleriana HOM05D002452 ORTHO05D006766 1.8e-126 457.2 567 51.5
vmacro11955 Vaccinium macrocarpon HOM05D002452 ORTHO05D006766 8.4e-108 395.2 592 46.3
Actinidia12591 Actinidia chinensis HOM05D002452 ORTHO05D006766 3.8e-100 369.8 586 44.4
Thecc.07G126400 Theobroma cacao HOM05D002452 ORTHO05D006766 3.5e-98 363.2 583 44.4
Cfa019543 Carpinus fangiana HOM05D002452 ORTHO05D006766 3.3e-96 356.7 585 45.0
QL08p025729 Quercus lobata HOM05D002452 ORTHO05D006766 2.8e-95 353.6 590 44.6
Gohir.A04G043100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 6.2e-95 352.4 583 43.6
Atru.chr2.2062 Acer truncatum HOM05D002452 ORTHO05D006766 1.8e-94 350.9 585 45.1
CiPaw.12G112400 Carya illinoinensis HOM05D002452 ORTHO05D006766 9.0e-94 348.6 587 43.4
Atru.chr10.1169 Acer truncatum HOM05D002452 ORTHO05D006766 4.5e-93 346.3 503 49.1
COL.COLO4_17511 Corchorus olitorius HOM05D002452 ORTHO05D006766 1.7e-92 344.4 601 41.8
TAR626G0804 Trochodendron aralioides HOM05D002452 ORTHO05D006766 1.1e-91 341.7 506 46.6
Rhsim06G0210300 Rhododendron simsii HOM05D002452 ORTHO05D006766 7.1e-91 339.0 637 41.6
Ciclev10019497m.g Citrus clementina HOM05D002452 ORTHO05D006766 4.6e-90 336.3 580 44.3
Gorai.009G366800 Gossypium raimondii HOM05D002452 ORTHO05D006766 4.6e-90 336.3 585 42.9
CSS0001384 Camellia sinensis var. sinensis HOM05D002452 ORTHO05D006766 7.9e-90 335.5 579 42.8
CsaV3_4G033030 Cucumis sativus L. HOM05D002452 ORTHO05D006766 6.7e-89 332.4 580 42.6
Gohir.D05G340400 Gossypium hirsutum HOM05D002452 ORTHO05D006766 2.5e-88 330.5 582 42.8
Prupe.4G160000 Prunus persica HOM05D002452 ORTHO05D006766 1.3e-87 328.2 592 42.4
MELO3C025646.2 Cucumis melo HOM05D002452 ORTHO05D006766 2.1e-87 327.4 580 41.9
Potri.001G387300 Populus trichocarpa HOM05D002452 ORTHO05D006766 2.1e-87 327.4 576 43.4
Gohir.D01G040900 Gossypium hirsutum HOM05D002452 ORTHO05D006766 3.7e-87 326.6 588 41.8
GSVIVG01014168001 Vitis vinifera HOM05D002452 ORTHO05D006766 2.4e-86 323.9 578 43.9
Dinv18382 Davidia involucrata HOM05D002452 ORTHO05D006766 4.0e-86 323.2 577 43.5
TWI39G0752 Tripterygium wilfordii HOM05D002452 ORTHO05D006766 3.4e-85 320.1 580 41.0
Gorai.002G051000 Gossypium raimondii HOM05D002452 ORTHO05D006766 7.6e-85 318.9 587 41.7
Duzib213G0380 Durio zibethinus HOM05D002452 ORTHO05D006766 1.0e-84 318.5 589 41.1
Sc03g0010610 Simmondsia chinensis HOM05D002452 ORTHO05D006766 1.0e-84 318.5 588 41.7
Eucgr.F01252 Eucalyptus grandis HOM05D002452 ORTHO05D006766 1.3e-84 318.2 579 41.8
Sed0025986 Sechium edule HOM05D002452 ORTHO05D006766 3.8e-84 316.6 492 43.7
TAR627G0084 Trochodendron aralioides HOM05D002452 ORTHO05D006766 3.8e-84 316.6 587 41.6
ClCG11G017390 Citrullus lanatus HOM05D002452 ORTHO05D006766 4.9e-84 316.2 596 40.6
Psat0s2485g0160 Pisum sativum HOM05D002452 ORTHO05D006766 4.9e-84 316.2 581 41.8
Glyma.12G231200 Glycine max HOM05D002452 ORTHO05D006766 6.5e-84 315.8 571 39.8
Lj8C147T4 Lonicera japonica HOM05D002452 ORTHO05D006766 4.2e-83 313.2 613 40.3
arahy.Tifrunner.gnm1.ann1.69X35Q Arachis hypogaea HOM05D002452 ORTHO05D006766 9.3e-83 312.0 580 41.7
Cc05_g10930 Coffea canephora HOM05D002452 ORTHO05D006766 1.2e-82 311.6 570 41.6
PGR083G1533 Punica granatum HOM05D002452 ORTHO05D006766 2.7e-82 310.5 577 40.6
AUR62019605 Chenopodium quinoa HOM05D002452 ORTHO05D006766 3.9e-81 306.6 592 40.5
arahy.Tifrunner.gnm1.ann1.T9SFGX Arachis hypogaea HOM05D002452 ORTHO05D006766 5.7e-80 302.8 581 41.0
Lj3g0025969 Lotus japonicus HOM05D002452 ORTHO05D006766 1.6e-79 301.2 574 40.2
MD11G1266100 Malus domestica HOM05D002452 ORTHO05D006766 4.8e-79 299.7 587 41.7
Lalb_Chr20g0109181 Lupinus albus HOM05D002452 ORTHO05D006766 6.3e-79 299.3 493 45.4
Haze_09304 Corylus avellana HOM05D002452 ORTHO05D006766 8.2e-79 298.9 459 46.6
EL10Ac4g08382 Beta vulgaris HOM05D002452 ORTHO05D006766 2.4e-78 297.4 590 40.0
RcHm_v2.0_Chr5g0030441 Rosa chinensis HOM05D002452 ORTHO05D006766 1.2e-77 295.0 616 39.8
Medtr2g075820 Medicago truncatula HOM05D002452 ORTHO05D006766 7.6e-77 292.4 576 40.6
CANSAT35G1635 Cannabis sativa HOM05D002452 ORTHO05D006766 2.9e-76 290.4 608 38.3
SGA_v2.0_scaffold181G39753 Striga asiatica HOM05D002452 ORTHO05D006766 3.8e-76 290.0 577 39.3
RcHm_v2.0_Chr5g0030521 Rosa chinensis HOM05D002452 ORTHO05D006766 6.5e-76 289.3 533 42.2
Peaxi162Scf00692g00318 Petunia axillaris HOM05D002452 ORTHO05D006766 1.9e-75 287.7 575 39.7
Nn3g21096 Nelumbo nucifera HOM05D002452 ORTHO05D006766 4.2e-75 286.6 625 39.0
SGA_v2.0_scaffold73G24396 Striga asiatica HOM05D002452 ORTHO05D006766 7.2e-75 285.8 578 39.3
SpUn0074_0010 Schrenkiella parvula HOM05D002452 ORTHO05D006766 9.3e-75 285.4 249 68.3
TPR.G16056 Trifolium pratense HOM05D002452 ORTHO05D006766 2.1e-74 284.3 576 40.3
FvH4_3g18120 Fragaria vesca HOM05D002452 ORTHO05D006766 3.6e-74 283.5 633 38.9
DCAR_013269 Daucus carota HOM05D002452 ORTHO05D006766 1.8e-73 281.2 618 38.0
Nitab4.5_0000383g0070 Nicotiana tabacum HOM05D002452 ORTHO05D006766 2.3e-73 280.8 576 39.4
Phvul.005G080800 Phaseolus vulgaris HOM05D002452 ORTHO05D006766 2.3e-73 280.8 532 40.6
Oeu025328.2 Olea europaea HOM05D002452 ORTHO05D006766 6.7e-73 279.3 585 38.5
AUR62037577 Chenopodium quinoa HOM05D002452 ORTHO05D006766 1.5e-72 278.1 502 42.0
FAN11G1668 Fragaria x ananassa HOM05D003130 ORTHO05D003547 3.3e-72 276.9 550 41.1
Sopen10g003230 Solanum pennellii HOM05D002452 ORTHO05D006766 7.4e-72 275.8 600 38.0
SalBow1G0777 Salvia bowleyana HOM05D002452 ORTHO05D006766 9.7e-72 275.4 589 38.4
SalBow8G0660 Salvia bowleyana HOM05D002452 ORTHO05D006766 9.7e-72 275.4 589 38.5
Solyc10g007400.4 Solanum lycopersicum HOM05D002452 ORTHO05D006766 2.2e-71 274.2 602 38.2
Aqoxy1G01990 Aquilegia oxysepala HOM05D002452 ORTHO05D006766 2.8e-71 273.9 589 39.4
MSTRG.14972 Avicennia marina HOM05D002452 ORTHO05D006766 2.8e-71 273.9 585 37.3
Ca_03951_v3 Cicer arietinum L. HOM05D002452 ORTHO05D006766 4.8e-71 273.1 581 39.4
Actinidia07509 Actinidia chinensis HOM05D002452 ORTHO05D006766 8.2e-71 272.3 309 50.8
HanXRQChr15g0495181 Helianthus annuus HOM05D002452 ORTHO05D006766 1.4e-70 271.6 574 38.9
VMungo1080G0044 Vigna mungo HOM05D002452 ORTHO05D006766 1.8e-70 271.2 485 41.2
TAR636G0392 Trochodendron aralioides HOM05D001914 ORTHO05D006766 1.2e-69 268.5 600 37.7
CAN.G904.34 Capsicum annuum HOM05D002452 ORTHO05D006766 2.0e-69 267.7 585 38.8
Manes.03G099700 Manihot esculenta HOM05D002452 ORTHO05D006766 3.4e-69 266.9 515 40.8
Lalb_Chr25g0285731 Lupinus albus HOM05D002452 ORTHO05D006766 2.2e-68 264.2 570 38.4
Lsat_1_v5_gn_7_102200 Lactuca sativa HOM05D002452 ORTHO05D006766 3.8e-68 263.5 572 39.0
Migut.M00711 Erythranthe guttata HOM05D002452 ORTHO05D006766 1.8e-65 254.6 604 35.9
PSO541G2585 Papaver somniferum HOM05D002452 ORTHO05D006766 5.1e-65 253.1 584 36.0
Gohir.A01G051100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 6.7e-65 252.7 485 40.0
FAN16G1664 Fragaria x ananassa HOM05D002452 ORTHO05D006766 8.8e-65 252.3 448 41.5
PGSC0003DMG400021257 Solanum tuberosum HOM05D002452 ORTHO05D006766 2.0e-64 251.1 644 35.6
ECA236G2857 Erigeron canadensis HOM05D002452 ORTHO05D006766 5.7e-64 249.6 569 35.0
PSO675G8136 Papaver somniferum HOM05D002452 ORTHO05D006766 2.8e-63 247.3 588 36.2
FAN25G3870 Fragaria x ananassa HOM05D003130 ORTHO05D003547 1.8e-62 244.6 539 39.7
CDE04G3284 Ceratophyllum demersum HOM05D002452 ORTHO05D006766 3.1e-62 243.8 589 35.1
Ah.04g164150 Amaranthus hybridus HOM05D003130 ORTHO05D003547 5.3e-62 243.0 558 36.0
Cpa.g.sc77.52 Carica papaya HOM05D002452 ORTHO05D006766 3.6e-58 230.3 380 42.1
Zm00001eb120810 Zea mays HOM05D002452 ORTHO05D006766 6.3e-55 219.5 492 36.4
Eucgr.F01259 Eucalyptus grandis HOM05D002452 ORTHO05D006766 7.0e-54 216.1 527 36.1
Zm00001eb338160 Zea mays HOM05D002452 ORTHO05D006766 7.0e-54 216.1 495 36.8
MD03G1244600 Malus domestica HOM05D002452 ORTHO05D006766 9.4e-51 205.7 359 40.7
Eucgr.F01317 Eucalyptus grandis HOM05D002452 ORTHO05D006766 2.3e-49 201.1 336 40.8
Hund10543 Selenicereus undatus HOM05D002452 ORTHO05D006766 5.7e-48 196.4 398 38.7
HPP92_024061 Vanilla planifolia HOM05D002452 ORTHO05D006766 3.1e-46 190.7 505 34.1
SEGI_19501 Sequoiadendron giganteum HOM05D002452 ORTHO05D006766 4.1e-46 190.3 526 33.8
Os01g0204000 Oryza sativa ssp. japonica HOM05D002452 ORTHO05D006766 1.2e-45 188.7 486 32.5
PSO541G6050 Papaver somniferum HOM05D002452 ORTHO05D006766 1.8e-41 174.9 297 36.7
Glyma.13G268300 Glycine max HOM05D002452 ORTHO05D006766 1.2e-40 172.2 246 41.9
RcHm_v2.0_Chr5g0030351 Rosa chinensis HOM05D002452 ORTHO05D006766 1.1e-38 165.6 439 37.8
RcHm_v2.0_Chr5g0030181 Rosa chinensis HOM05D002452 ORTHO05D006766 9.1e-38 162.5 440 38.0
ATR0012G041 Amborella trichopoda HOM05D002452 ORTHO05D006766 7.2e-35 152.9 502 32.3
Pp3c27_7450 Physcomitrium patens HOM05D002452 ORTHO05D006766 1.2e-32 145.6 429 35.2
Zm00001eb317290 Zea mays HOM05D002452 ORTHO05D006766 3.6e-26 124.0 263 36.5
SMO172G0197 Selaginella moellendorffii HOM05D000586 ORTHO05D003356 4.1e-22 110.5 483 30.2
Mapoly0011s0137 Marchantia polymorpha HOM05D002452 ORTHO05D006766 7.0e-22 109.8 521 27.1
CBR_g36415 Chara braunii HOM05D002452 ORTHO05D006766 9.2e-22 109.4 128 46.1
AagrBONN_evm.TU.Sc2ySwM_368.2647 Anthoceros agrestis HOM05D002452 ORTHO05D006766 1.3e-20 105.5 570 26.8
Zm00001eb370750 Zea mays HOM05D002452 ORTHO05D006766 4.7e-18 97.1 232 35.8
Eucgr.F01264 Eucalyptus grandis HOM05D002452 ORTHO05D006766 5.8e-16 90.1 335 31.3
MD03G1244500 Malus domestica HOM05D002452 ORTHO05D006766 3.2e-14 84.3 180 46.7
Zm00001eb309500 Zea mays HOM05D002452 ORTHO05D006766 3.5e-13 80.9 65 58.5
Gohir.A01G051000 Gossypium hirsutum HOM05D002452 ORTHO05D006766 5.6e-11 73.6 101 49.5
RcHm_v2.0_Chr5g0030251 Rosa chinensis HOM05D002452 ORTHO05D006766 8.1e-10 69.7 129 48.1
Zm00001eb002150 Zea mays HOM05D002452 ORTHO05D006766 4.4e-08 63.9 209 31.1
Zm00001eb137460 Zea mays HOM05D002452 ORTHO05D006766 5.8e-08 63.5 295 28.1
Zm00001eb409150 Zea mays HOM05D002452 ORTHO05D006766 6.4e-07 60.1 193 29.5
C03p92730 Brassica napus HOM05D002452 ORTHO05D006766 8.3e-07 59.7 67 55.2
A06p29200 Brassica napus HOM05D000817 ORTHO05D000702 3.2e-06 57.8 56 60.7
Zm00001eb024250 Zea mays HOM05D002452 ORTHO05D006766 7.1e-06 56.6 160 30.0


User provided reference genes

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