Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG4G2200 Aethionema arabicum HOM05D006067 ORTHO05D007327 2.8e-274 948.0 475 100.0
Thhalv10018481m.g Eutrema salsugineum HOM05D006067 ORTHO05D007327 1.2e-171 607.1 484 65.3
AT1G78810 Arabidopsis thaliana HOM05D006067 ORTHO05D007327 5.5e-169 598.2 479 64.1
Sp5g33840 Schrenkiella parvula HOM05D006067 ORTHO05D007327 1.2e-168 597.0 483 62.9
Carub.0002s2563 Capsella rubella HOM05D006067 ORTHO05D007327 3.7e-165 585.5 474 63.3
CARHR072360 Cardamine hirsuta HOM05D006067 ORTHO05D007327 1.1e-164 583.9 469 64.4
AL2G39210 Arabidopsis lyrata HOM05D006067 ORTHO05D007327 1.8e-159 566.6 477 62.3
C02p35900 Brassica napus HOM05D006067 ORTHO05D007327 1.8e-140 503.4 474 57.2
BolC2t09603H Brassica oleracea HOM05D006067 ORTHO05D007327 1.7e-138 496.9 474 56.5
BraA02t07240Z Brassica rapa HOM05D006067 ORTHO05D007327 4.7e-136 488.8 472 56.4
A02p22360 Brassica napus HOM05D006067 ORTHO05D007327 3.1e-135 486.1 472 55.9
BcaB05g25155 Brassica carinata HOM05D006067 ORTHO05D007327 8.9e-135 484.6 479 55.1
BcaC03g15839 Brassica carinata HOM05D006067 ORTHO05D007327 3.8e-117 426.0 474 51.7
THA.LOC104812320 Tarenaya hassleriana HOM05D006067 ORTHO05D007327 5.3e-79 299.3 321 53.3
Cpa.g.sc77.10 Carica papaya HOM05D006067 ORTHO05D007327 4.8e-64 249.6 505 35.6
Potri.011G109600 Populus trichocarpa HOM05D006067 ORTHO05D007327 3.8e-61 240.0 503 32.4
Sabra11G0096900 Salix brachista HOM05D006067 ORTHO05D007327 6.5e-61 239.2 507 33.5
Atru.chr2.2107 Acer truncatum HOM05D006067 ORTHO05D007327 2.6e-54 217.2 556 30.8
vmacro09492 Vaccinium macrocarpon HOM05D006067 ORTHO05D007327 2.3e-50 204.1 535 31.6
Thecc.07G117200 Theobroma cacao HOM05D006067 ORTHO05D007327 3.3e-49 200.3 554 29.6
ClCG11G017430 Citrullus lanatus HOM05D006067 ORTHO05D007327 9.7e-49 198.7 580 29.7
Glyma.13G269800 Glycine max HOM05D006067 ORTHO05D007327 2.4e-47 194.1 397 32.7
Lj3g0019341 Lotus japonicus HOM05D006067 ORTHO05D007327 2.4e-47 194.1 393 33.3
TPR.G13942 Trifolium pratense HOM05D006067 ORTHO05D007327 5.9e-46 189.5 390 33.6
TWI38G1841 Tripterygium wilfordii HOM05D006067 ORTHO05D007327 1.0e-45 188.7 553 28.2
CsaV3_4G033090 Cucumis sativus L. HOM05D006067 ORTHO05D007327 5.0e-45 186.4 557 28.9
CANSAT35G0531 Cannabis sativa HOM05D006067 ORTHO05D007327 6.5e-45 186.0 488 31.4
Glyma.12G229800 Glycine max HOM05D006067 ORTHO05D007327 4.2e-44 183.3 408 31.6
MELO3C025643.2 Cucumis melo HOM05D006067 ORTHO05D007327 1.6e-43 181.4 549 29.5
Sabra16G0255800 Salix brachista HOM05D006067 ORTHO05D007327 2.3e-42 177.6 438 30.4
Sed0004545 Sechium edule HOM05D006067 ORTHO05D007327 5.2e-42 176.4 567 28.2
VMungo1080G1893 Vigna mungo HOM05D006067 ORTHO05D007327 1.2e-41 175.3 416 32.0
Migut.M00726 Erythranthe guttata HOM05D006067 ORTHO05D007327 7.5e-41 172.6 547 28.2
Gohir.D01G042720 Gossypium hirsutum HOM05D006067 ORTHO05D007327 2.2e-40 171.0 618 26.7
Aqoxy4G00317 Aquilegia oxysepala HOM05D006067 ORTHO05D007327 2.8e-40 170.6 525 28.0
Gorai.002G054500 Gossypium raimondii HOM05D006067 ORTHO05D007327 2.8e-40 170.6 618 25.9
Medtr2g076330 Medicago truncatula HOM05D006067 ORTHO05D007327 1.1e-39 168.7 447 30.2
Gohir.A01G054200 Gossypium hirsutum HOM05D006067 ORTHO05D007327 1.4e-39 168.3 581 27.4
Lalb_Chr03g0031151 Lupinus albus HOM05D006067 ORTHO05D007327 2.4e-39 167.5 567 27.7
Prupe.4G164500 Prunus persica HOM05D006067 ORTHO05D007327 2.4e-39 167.5 588 26.4
PGR031G0069 Punica granatum HOM05D006067 ORTHO05D007327 2.4e-39 167.5 430 31.2
QL12p009545 Quercus lobata HOM05D006067 ORTHO05D007327 7.0e-39 166.0 605 25.6
GSVIVG01014195001 Vitis vinifera HOM05D006067 ORTHO05D007327 9.1e-39 165.6 261 37.5
Glyma.08G245900 Glycine max HOM05D006067 ORTHO05D007327 1.6e-38 164.9 367 30.5
Nn1g04444 Nelumbo nucifera HOM05D006067 ORTHO05D007327 2.7e-38 164.1 253 38.7
Manes.15G095100 Manihot esculenta HOM05D006067 ORTHO05D007327 1.0e-37 162.2 286 36.0
arahy.Tifrunner.gnm1.ann1.V1MG1J Arachis hypogaea HOM05D006067 ORTHO05D007327 1.7e-37 161.4 596 24.8
EL10Ac4g08347 Beta vulgaris HOM05D006067 ORTHO05D007327 3.8e-37 160.2 260 39.2
Peaxi162Scf00692g00416 Petunia axillaris HOM05D006067 ORTHO05D007327 3.3e-36 157.1 270 37.4
arahy.Tifrunner.gnm1.ann1.9BW5EX Arachis hypogaea HOM05D006067 ORTHO05D007327 2.8e-35 154.1 617 24.8
Lsat_1_v5_gn_9_99841 Lactuca sativa HOM05D006067 ORTHO05D007327 3.6e-35 153.7 273 36.3
RcHm_v2.0_Chr7g0196621 Rosa chinensis HOM05D006067 ORTHO05D007327 2.3e-34 151.0 263 37.6
COL.COLO4_17541 Corchorus olitorius HOM05D006067 ORTHO05D007327 3.0e-34 150.6 413 30.8
Eucgr.F03271 Eucalyptus grandis HOM05D006067 ORTHO05D007327 3.0e-34 150.6 409 30.1
Phvul.005G065400 Phaseolus vulgaris HOM05D006067 ORTHO05D007327 3.0e-34 150.6 476 27.9
Dinv14994 Davidia involucrata HOM05D006614 ORTHO05D008217 1.2e-33 148.7 255 34.9
Sopen10g003150 Solanum pennellii HOM05D006067 ORTHO05D007327 7.5e-33 146.0 286 36.7
vmacro11942 Vaccinium macrocarpon HOM05D006067 ORTHO05D007327 9.8e-33 145.6 272 36.0
Cc05_g11060 Coffea canephora HOM05D006067 ORTHO05D007327 1.3e-32 145.2 262 38.5
Solyc10g007340.3 Solanum lycopersicum HOM05D006067 ORTHO05D007327 1.7e-32 144.8 285 36.5
RcHm_v2.0_Chr5g0030881 Rosa chinensis HOM05D006067 ORTHO05D007327 8.3e-32 142.5 262 36.3
Psat4g136000 Pisum sativum HOM05D006067 ORTHO05D007327 1.8e-31 141.4 261 35.2
RcHm_v2.0_Chr1g0314351 Rosa chinensis HOM05D006067 ORTHO05D007327 1.8e-31 141.4 247 36.0
HanXRQChr13g0389481 Helianthus annuus HOM05D006067 ORTHO05D007327 3.1e-31 140.6 329 34.0
Rhsim06G0208300 Rhododendron simsii HOM05D006067 ORTHO05D007327 4.1e-31 140.2 287 32.8
MBI07_g09563_MAGBIO Magnolia biondii HOM05D006067 ORTHO05D007327 9.2e-31 139.0 258 34.5
CDE02G3386 Ceratophyllum demersum HOM05D006067 ORTHO05D007327 3.5e-30 137.1 259 34.0
Duzib268G0832 Durio zibethinus HOM05D006067 ORTHO05D007327 3.5e-30 137.1 287 32.1
MSTRG.6678 Avicennia marina HOM05D006067 ORTHO05D007327 4.5e-30 136.7 267 33.0
TAR624G0749 Trochodendron aralioides HOM05D006067 ORTHO05D007327 5.9e-30 136.3 271 35.4
SalBow8G2822 Salvia bowleyana HOM05D006067 ORTHO05D007327 1.3e-29 135.2 258 35.7
CSS0028289 Camellia sinensis var. sinensis HOM05D006067 ORTHO05D007327 3.8e-29 133.7 265 33.6
Haze_00805 Corylus avellana HOM05D006067 ORTHO05D007327 3.8e-29 133.7 374 28.9
Ciclev10024254m.g Citrus clementina HOM05D006067 ORTHO05D007327 8.6e-29 132.5 180 43.3
Sopen10g003170 Solanum pennellii HOM05D006067 ORTHO05D007327 1.5e-28 131.7 289 34.9
SGA_v2.0_scaffold70G23375 Striga asiatica HOM05D006067 ORTHO05D007327 3.3e-28 130.6 257 33.1
Lj3g0000770 Lotus japonicus HOM05D006067 ORTHO05D007327 1.2e-27 128.6 311 32.8
Rhsim04G0026500 Rhododendron simsii HOM05D006067 ORTHO05D007327 3.6e-27 127.1 194 41.8
Cfa015710 Carpinus fangiana HOM05D006067 ORTHO05D007327 1.0e-26 125.6 196 36.2
FAN11G2230 Fragaria x ananassa HOM05D006067 ORTHO05D007327 1.4e-26 125.2 257 32.7
FvH4_3g18260 Fragaria vesca HOM05D006067 ORTHO05D007327 6.8e-26 122.9 257 32.3
Nitab4.5_0006953g0020 Nicotiana tabacum HOM05D001990 ORTHO05D002033 6.8e-26 122.9 189 39.7
Hma1.2p1_0290F.1_g114870 Hydrangea macrophylla HOM05D006067 ORTHO05D007327 8.9e-26 122.5 237 34.6
Lalb_Chr14g0365891 Lupinus albus HOM05D006067 ORTHO05D007327 2.6e-25 120.9 175 38.9
Ca_26225_v3 Cicer arietinum L. HOM05D006067 ORTHO05D007327 7.5e-25 119.4 286 34.3
Peaxi162Scf00111g01468 Petunia axillaris HOM05D001990 ORTHO05D002033 7.5e-25 119.4 186 37.6
Hund25365 Selenicereus undatus HOM05D006067 ORTHO05D007327 9.8e-25 119.0 266 32.0
Lalb_Chr24g0400331 Lupinus albus HOM05D006067 ORTHO05D007327 6.4e-24 116.3 218 34.9
PGSC0003DMG400007100 Solanum tuberosum HOM05D006067 ORTHO05D007327 8.3e-24 115.9 192 39.1
CSS0029215 Camellia sinensis var. sinensis HOM05D006067 ORTHO05D007327 1.4e-23 115.2 206 35.9
Oeu031029.1 Olea europaea HOM05D006067 ORTHO05D007327 1.4e-23 115.2 266 29.7
Ca_03979_v3 Cicer arietinum L. HOM05D006067 ORTHO05D007327 5.4e-23 113.2 211 35.5
Medtr0022s0280 Medicago truncatula HOM05D006067 ORTHO05D007327 5.4e-23 113.2 270 30.7
Phvul.011G162500 Phaseolus vulgaris HOM05D006067 ORTHO05D007327 7.0e-23 112.8 296 31.8
VMungo1127G0097 Vigna mungo HOM05D006067 ORTHO05D007327 9.2e-23 112.5 291 30.2
CDE09G1032 Ceratophyllum demersum HOM05D001990 ORTHO05D002033 2.7e-22 110.9 184 35.9
Solyc07g062410.4 Solanum lycopersicum HOM05D006067 ORTHO05D007327 2.7e-22 110.9 180 37.2
Sopen07g030660 Solanum pennellii HOM05D006067 ORTHO05D007327 2.7e-22 110.9 185 37.8
Sc16g0007610 Simmondsia chinensis HOM05D006067 ORTHO05D007327 3.0e-21 107.5 272 29.0
MD11G1264000 Malus domestica HOM05D006067 ORTHO05D007327 1.1e-20 105.5 177 37.9
HPP92_012804 Vanilla planifolia HOM05D006067 ORTHO05D007327 1.9e-20 104.8 267 32.2
arahy.Tifrunner.gnm1.ann1.VQ55QZ Arachis hypogaea HOM05D006067 ORTHO05D007327 7.3e-20 102.8 162 37.0
arahy.Tifrunner.gnm1.ann1.2G52JQ Arachis hypogaea HOM05D006067 ORTHO05D007327 9.5e-20 102.4 162 37.0
AUR62042783 Chenopodium quinoa HOM05D006067 ORTHO05D007327 4.7e-19 100.1 85 49.4
Glyma.06G229200 Glycine max HOM05D006067 ORTHO05D007327 3.1e-18 97.4 302 27.8
ATR0012G052 Amborella trichopoda HOM05D006067 ORTHO05D007327 4.0e-18 97.1 298 27.5
Eucgr.F03267 Eucalyptus grandis HOM05D006067 ORTHO05D007327 6.8e-18 96.3 280 28.9
RcHm_v2.0_Chr1g0357411 Rosa chinensis HOM05D006067 ORTHO05D007327 2.0e-17 94.7 82 52.4
Nitab4.5_0003565g0020 Nicotiana tabacum HOM05D001990 ORTHO05D002033 2.6e-17 94.4 177 35.0
ECA240G2089 Erigeron canadensis HOM05D006067 ORTHO05D007327 1.7e-16 91.7 99 41.4
TPR.G11309 Trifolium pratense HOM05D006067 ORTHO05D007327 6.4e-16 89.7 152 33.6
AUR62007119 Chenopodium quinoa HOM05D006067 ORTHO05D007327 1.4e-15 88.6 76 47.4
Mapoly0061s0049 Marchantia polymorpha HOM05D006067 ORTHO05D007327 1.3e-13 82.0 85 41.2
SalBow1G5118 Salvia bowleyana HOM05D006067 ORTHO05D007327 1.9e-12 78.2 59 59.3
PGSC0003DMG400021262 Solanum tuberosum HOM05D006067 ORTHO05D007327 1.2e-11 75.5 74 54.1
AUR62019577 Chenopodium quinoa HOM05D006067 ORTHO05D007327 1.6e-11 75.1 270 25.9
Lj1P829T26 Lonicera japonica HOM05D006067 ORTHO05D007327 2.8e-11 74.3 141 37.6
Thecc.07G116600 Theobroma cacao HOM05D006067 ORTHO05D007327 8.1e-11 72.8 150 33.3
Os06g0153600 Oryza sativa ssp. japonica HOM05D006067 ORTHO05D007327 1.4e-10 72.0 79 40.5
Zm00001eb152520 Zea mays HOM05D006067 ORTHO05D007327 1.8e-10 71.6 118 36.4
Os01g0759000 Oryza sativa ssp. japonica HOM05D006067 ORTHO05D007327 2.3e-10 71.2 220 26.8
Mapoly1798s0001 Marchantia polymorpha HOM05D006067 ORTHO05D007327 5.2e-10 70.1 135 34.8
SEGI_27593 Sequoiadendron giganteum HOM05D006067 ORTHO05D007327 8.9e-10 69.3 74 43.2
FAN16G1756 Fragaria x ananassa HOM05D006067 ORTHO05D007327 1.2e-09 68.9 208 28.4
SHI37128 Sapria himalayana HOM05D006067 ORTHO05D007327 7.5e-09 66.2 247 26.3
Pp3c23_21590 Physcomitrium patens HOM05D006067 ORTHO05D007327 9.9e-09 65.9 81 37.0
Nitab4.5_0000383g0160 Nicotiana tabacum HOM05D006067 ORTHO05D007327 7.1e-07 59.7 73 43.8
Sabra08G0016500 Salix brachista HOM05D002310 ORTHO05D002326 1.2e-06 58.9 195 27.2


User provided reference genes

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