Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG4G2110 Aethionema arabicum HOM05D005569 ORTHO05D007052 2.7e-83 312.0 163 100.0
Sp5g33910 Schrenkiella parvula HOM05D005569 ORTHO05D007052 2.7e-75 285.4 165 92.1
AT1G78895 Arabidopsis thaliana HOM05D005569 ORTHO05D007052 1.0e-74 283.5 165 90.9
AL2G39310 Arabidopsis lyrata HOM05D005569 ORTHO05D007052 2.3e-74 282.3 165 90.3
BcaC08g45404 Brassica carinata HOM05D005569 ORTHO05D007052 3.0e-74 282.0 164 90.2
A07p27440 Brassica napus HOM05D005569 ORTHO05D007052 3.0e-74 282.0 164 90.9
C06p30360 Brassica napus HOM05D005569 ORTHO05D007052 3.0e-74 282.0 164 90.2
BolC6t38199H Brassica oleracea HOM05D005569 ORTHO05D007052 5.1e-74 281.2 164 90.2
Thhalv10019242m.g Eutrema salsugineum HOM05D005569 ORTHO05D007052 1.5e-73 279.6 165 90.3
BraA07t30385Z Brassica rapa HOM05D005569 ORTHO05D007052 2.5e-73 278.9 164 90.2
THA.LOC104808103 Tarenaya hassleriana HOM05D005569 ORTHO05D007052 3.3e-73 278.5 165 87.9
BcaB02g07184 Brassica carinata HOM05D005569 ORTHO05D007052 1.3e-72 276.6 165 88.5
Carub.0002s2572 Capsella rubella HOM05D005569 ORTHO05D007052 5.3e-71 271.2 166 88.6
CARHR072480 Cardamine hirsuta HOM05D005569 ORTHO05D007052 1.5e-70 269.6 165 87.3
CARHR017290 Cardamine hirsuta HOM05D005569 ORTHO05D007052 4.6e-67 258.1 159 84.9
Sp1g14960 Schrenkiella parvula HOM05D005569 ORTHO05D007052 1.1e-65 253.4 159 86.2
BcaC07g41383 Brassica carinata HOM05D005569 ORTHO05D007052 1.3e-64 250.0 157 86.0
BcaC07g41456 Brassica carinata HOM05D005569 ORTHO05D007052 4.8e-64 248.1 160 84.4
BolC8t51973H Brassica oleracea HOM05D005569 ORTHO05D007052 4.8e-64 248.1 160 84.4
BraA09t41445Z Brassica rapa HOM05D005569 ORTHO05D007052 1.8e-63 246.1 160 83.8
Cpa.g.sc176.7 Carica papaya HOM05D005569 ORTHO05D007052 2.4e-63 245.7 159 81.1
Carub.0001s1656 Capsella rubella HOM05D005569 ORTHO05D007052 5.3e-63 244.6 157 84.7
AT1G16825 Arabidopsis thaliana HOM05D005569 ORTHO05D007052 2.2e-61 239.2 157 83.4
AL1G28990 Arabidopsis lyrata HOM05D005569 ORTHO05D007052 3.8e-61 238.4 154 84.4
Thecc.06G056000 Theobroma cacao HOM05D005569 ORTHO05D007052 3.0e-58 228.8 160 75.0
Gohir.A05G114900 Gossypium hirsutum HOM05D005569 ORTHO05D007052 5.1e-58 228.0 160 75.6
Potri.008G004200 Populus trichocarpa HOM05D005569 ORTHO05D007052 1.1e-57 226.9 161 74.5
Gohir.D05G115300 Gossypium hirsutum HOM05D005569 ORTHO05D007052 3.3e-57 225.3 160 75.0
Gorai.009G119400 Gossypium raimondii HOM05D005569 ORTHO05D007052 3.3e-57 225.3 160 75.0
COL.COLO4_31145 Corchorus olitorius HOM05D000810 ORTHO05D003737 7.4e-57 224.2 158 75.3
Ciclev10032913m.g Citrus clementina HOM05D005569 ORTHO05D007052 2.2e-56 222.6 160 73.8
Prupe.3G023400 Prunus persica HOM05D005569 ORTHO05D007052 4.1e-55 218.4 165 72.1
Manes.06G179601 Manihot esculenta HOM05D005569 ORTHO05D007052 7.0e-55 217.6 160 73.1
MD09G1166000 Malus domestica HOM05D005569 ORTHO05D007052 9.1e-55 217.2 165 72.7
arahy.Tifrunner.gnm1.ann1.DT0EHL Arachis hypogaea HOM05D005569 ORTHO05D007052 2.6e-54 215.7 161 72.7
arahy.Tifrunner.gnm1.ann1.0XD544 Arachis hypogaea HOM05D005569 ORTHO05D007052 4.5e-54 214.9 161 72.7
CiPaw.01G208600 Carya illinoinensis HOM05D005569 ORTHO05D007052 4.5e-54 214.9 155 76.1
Hma1.2p1_1111F.1_g258450 Hydrangea macrophylla HOM05D005569 ORTHO05D007052 5.9e-54 214.5 149 75.8
CiPaw.02G129100 Carya illinoinensis HOM05D005569 ORTHO05D007052 1.0e-53 213.8 142 79.6
ClCG09G020780 Citrullus lanatus HOM05D005569 ORTHO05D007052 1.3e-53 213.4 161 70.8
QL05p088862 Quercus lobata HOM05D005569 ORTHO05D007052 1.7e-53 213.0 153 74.5
TWI75G0478 Tripterygium wilfordii HOM05D005569 ORTHO05D007052 2.2e-53 212.6 141 78.7
GSVIVG01029554001 Vitis vinifera HOM05D005569 ORTHO05D007052 2.2e-53 212.6 140 78.6
RcHm_v2.0_Chr2g0149331 Rosa chinensis HOM05D005569 ORTHO05D007052 5.0e-53 211.5 164 69.5
Lj3g0021821 Lotus japonicus HOM05D005569 ORTHO05D007052 6.5e-53 211.1 161 70.8
Sed0017383 Sechium edule HOM05D005569 ORTHO05D007052 6.5e-53 211.1 161 68.9
Eucgr.J00350 Eucalyptus grandis HOM05D005569 ORTHO05D007052 8.5e-53 210.7 158 70.3
CsaV3_5G025600 Cucumis sativus L. HOM05D005569 ORTHO05D007052 1.9e-52 209.5 160 68.8
MD17G1161700 Malus domestica HOM05D005569 ORTHO05D007052 1.9e-52 209.5 160 71.9
TPR.G38774 Trifolium pratense HOM05D005569 ORTHO05D007052 1.9e-52 209.5 161 69.6
MELO3C002923.2 Cucumis melo HOM05D005569 ORTHO05D007052 2.5e-52 209.1 161 68.9
C08p44280 Brassica napus HOM05D005569 ORTHO05D007052 4.2e-52 208.4 130 87.7
FvH4_6g36900 Fragaria vesca HOM05D005569 ORTHO05D007052 7.2e-52 207.6 164 68.3
FAN14G0087 Fragaria x ananassa HOM05D000810 ORTHO05D003737 7.2e-52 207.6 164 68.3
Medtr4g005340 Medicago truncatula HOM05D005569 ORTHO05D007052 7.2e-52 207.6 160 69.4
Ca_20982_v3 Cicer arietinum L. HOM05D005569 ORTHO05D007052 1.2e-51 206.8 160 69.4
A09p60680 Brassica napus HOM05D005569 ORTHO05D007052 1.6e-51 206.5 130 86.9
FAN09G0120 Fragaria x ananassa HOM05D005569 ORTHO05D007052 1.6e-51 206.5 164 68.9
Actinidia00647 Actinidia chinensis HOM05D005569 ORTHO05D007052 4.7e-51 204.9 154 70.1
Psat7g265160 Pisum sativum HOM05D005569 ORTHO05D007052 6.1e-51 204.5 160 68.1
PSO063G3520 Papaver somniferum HOM05D005569 ORTHO05D007052 8.0e-51 204.1 161 67.7
Lj6P639T26 Lonicera japonica HOM05D005569 ORTHO05D007052 1.0e-50 203.8 130 80.8
TAR626G0082 Trochodendron aralioides HOM05D005569 ORTHO05D007052 1.4e-50 203.4 145 75.2
Nn8g41003 Nelumbo nucifera HOM05D005569 ORTHO05D007052 2.3e-50 202.6 139 77.0
PSO170G0292 Papaver somniferum HOM05D005569 ORTHO05D007052 3.9e-50 201.8 160 67.5
Aqoxy7G02714 Aquilegia oxysepala HOM05D005569 ORTHO05D007052 6.7e-50 201.1 161 69.6
PGR031G1139 Punica granatum HOM05D005569 ORTHO05D007052 8.8e-50 200.7 192 59.9
Sc15g0001130 Simmondsia chinensis HOM05D005569 ORTHO05D007052 8.8e-50 200.7 141 75.2
AUR62025672 Chenopodium quinoa HOM05D005569 ORTHO05D007052 4.4e-49 198.4 136 75.7
Lsat_1_v5_gn_5_137201 Lactuca sativa HOM05D005569 ORTHO05D007052 4.4e-49 198.4 141 73.0
FAN02G3798 Fragaria x ananassa HOM05D005569 ORTHO05D007052 1.7e-48 196.4 152 71.1
FAN05G2575 Fragaria x ananassa HOM05D005569 ORTHO05D007052 2.8e-48 195.7 193 58.0
VMungo0331G1663 Vigna mungo HOM05D005569 ORTHO05D007052 2.8e-48 195.7 143 72.7
vmacro12582 Vaccinium macrocarpon HOM05D005569 ORTHO05D007052 3.7e-48 195.3 157 67.5
HanXRQChr12g0359721 Helianthus annuus HOM05D005569 ORTHO05D007052 4.8e-48 194.9 140 72.1
CSS0046788 Camellia sinensis var. sinensis HOM05D005569 ORTHO05D007052 6.3e-48 194.5 157 68.2
Nitab4.5_0001708g0020 Nicotiana tabacum HOM05D005569 ORTHO05D007052 6.3e-48 194.5 137 74.5
PGSC0003DMG400001840 Solanum tuberosum HOM05D005569 ORTHO05D007052 6.3e-48 194.5 155 67.7
Migut.D00888 Erythranthe guttata HOM05D005569 ORTHO05D007052 8.2e-48 194.1 151 68.9
CAN.G1445.2 Capsicum annuum HOM05D005569 ORTHO05D007052 1.4e-47 193.4 137 74.5
HanXRQChr10g0311221 Helianthus annuus HOM05D005569 ORTHO05D007052 1.4e-47 193.4 140 72.1
Hund05672 Selenicereus undatus HOM05D005569 ORTHO05D007052 1.4e-47 193.4 139 71.2
Sopen08g026060 Solanum pennellii HOM05D005569 ORTHO05D007052 2.4e-47 192.6 155 67.7
PGSC0003DMG400026509 Solanum tuberosum HOM05D005569 ORTHO05D007052 3.1e-47 192.2 154 64.9
Glyma.07G001900 Glycine max HOM05D005569 ORTHO05D007052 5.3e-47 191.4 141 70.9
Nitab4.5_0007226g0010 Nicotiana tabacum HOM05D005569 ORTHO05D007052 7.0e-47 191.0 137 73.7
Hund18590 Selenicereus undatus HOM05D005569 ORTHO05D007052 2.0e-46 189.5 155 64.5
Solyc08g077470.4 Solanum lycopersicum HOM05D005569 ORTHO05D007052 2.0e-46 189.5 137 73.7
Nitab4.5_0002354g0080 Nicotiana tabacum HOM05D005569 ORTHO05D007052 3.5e-46 188.7 132 73.5
ECA234G1813 Erigeron canadensis HOM05D005569 ORTHO05D007052 4.5e-46 188.3 143 69.2
SGA_v2.0_scaffold4G02105 Striga asiatica HOM05D005569 ORTHO05D007052 1.0e-45 187.2 165 60.6
CDE04G0659 Ceratophyllum demersum HOM05D005569 ORTHO05D007052 2.9e-45 185.7 138 71.0
Lalb_Chr01g0011651 Lupinus albus HOM05D005569 ORTHO05D007052 2.9e-45 185.7 139 70.5
EL10Ac7g18137 Beta vulgaris HOM05D005569 ORTHO05D007052 5.0e-45 184.9 125 77.6
Sopen06g022820 Solanum pennellii HOM05D005569 ORTHO05D007052 5.0e-45 184.9 132 71.2
MSTRG.9559 Avicennia marina HOM05D005569 ORTHO05D007052 6.5e-45 184.5 151 65.6
CDE07G0675 Ceratophyllum demersum HOM05D005569 ORTHO05D007052 1.1e-44 183.7 137 70.8
HPP92_023863 Vanilla planifolia HOM05D005569 ORTHO05D007052 1.5e-44 183.3 138 69.6
Actinidia31124 Actinidia chinensis HOM05D005569 ORTHO05D007052 4.2e-44 181.8 145 66.9
CAN.G308.17 Capsicum annuum HOM05D005569 ORTHO05D007052 5.5e-44 181.4 154 62.3
MSTRG.4523 Avicennia marina HOM05D005569 ORTHO05D007052 1.6e-43 179.9 136 68.4
Thhalv10009539m.g Eutrema salsugineum HOM05D005569 ORTHO05D007052 2.7e-43 179.1 102 93.1
Oeu049628.2 Olea europaea HOM05D005569 ORTHO05D007052 6.1e-43 177.9 124 75.0
Zm00001eb414080 Zea mays HOM05D005569 ORTHO05D007052 8.8e-42 174.1 132 69.7
Nitab4.5_0003757g0060 Nicotiana tabacum HOM05D005569 ORTHO05D007052 4.4e-41 171.8 126 72.2
SalBow4G0561 Salvia bowleyana HOM05D005569 ORTHO05D007052 7.5e-41 171.0 145 64.8
Phvul.010G164400 Phaseolus vulgaris HOM05D005569 ORTHO05D007052 3.7e-40 168.7 157 59.9
Haze_16187 Corylus avellana HOM05D005569 ORTHO05D007052 1.0e-37 160.6 97 85.6
SEGI_33936 Sequoiadendron giganteum HOM05D005569 ORTHO05D007052 2.2e-37 159.5 136 63.2
Peaxi162Scf00084g00024 Petunia axillaris HOM05D005569 ORTHO05D007052 8.5e-37 157.5 108 76.9
CANSAT01G2461 Cannabis sativa HOM05D005569 ORTHO05D007052 1.1e-36 157.1 100 78.0
Sabra08G0001800 Salix brachista HOM05D005569 ORTHO05D007052 1.5e-36 156.8 100 83.0
MBI16_g18210_MAGBIO Magnolia biondii HOM05D005569 ORTHO05D007052 1.9e-36 156.4 100 79.0
AUR62001332 Chenopodium quinoa HOM05D005569 ORTHO05D007052 7.2e-36 154.5 109 75.2
DCAR_028944 Daucus carota HOM05D005569 ORTHO05D007052 8.0e-35 151.0 98 79.6
Os08g0225100 Oryza sativa ssp. japonica HOM05D005569 ORTHO05D007052 1.2e-33 147.1 108 71.3
SEGI_27689 Sequoiadendron giganteum HOM05D005569 ORTHO05D007052 1.8e-31 139.8 117 61.5
SMO215G0002 Selaginella moellendorffii HOM05D005569 ORTHO05D007052 1.1e-28 130.6 118 59.3
Pp3c8_16360 Physcomitrium patens HOM05D005569 ORTHO05D007052 1.5e-28 130.2 142 53.5
Mapoly0045s0143 Marchantia polymorpha HOM05D005569 ORTHO05D007052 4.2e-28 128.6 128 51.6
BcaC07g41384 Brassica carinata HOM05D005569 ORTHO05D007052 5.5e-28 128.3 111 64.9
Atru.chr1.2818 Acer truncatum HOM05D005569 ORTHO05D007052 6.1e-27 124.8 79 78.5
Duzib192G1047 Durio zibethinus HOM05D005569 ORTHO05D007052 6.1e-27 124.8 84 76.2
Cc04_g00060 Coffea canephora HOM05D005569 ORTHO05D007052 1.5e-25 120.2 89 70.8
ATR0626G016 Amborella trichopoda HOM05D005569 ORTHO05D007052 4.4e-25 118.6 88 70.5
Prupe.3G058300 Prunus persica HOM05D005569 ORTHO05D007052 3.5e-22 109.0 74 77.0
Pp3c24_12140 Physcomitrium patens HOM05D005569 ORTHO05D007052 1.2e-17 94.0 127 49.6
Duzib235G0081 Durio zibethinus HOM05D005569 ORTHO05D007052 1.7e-16 90.1 55 81.8
CBR_g49429 Chara braunii HOM05D005569 ORTHO05D007052 9.2e-15 84.3 121 41.3
CBR_g40779 Chara braunii HOM05D005569 ORTHO05D007052 7.8e-14 81.3 121 43.0
unitig_899.g14763 Utricularia gibba HOM05D000070 ORTHO05D003301 7.8e-14 81.3 66 63.6
CBR_g41646 Chara braunii HOM05D000785 ORTHO05D000231 9.5e-12 74.3 144 37.5
HPP92_023858 Vanilla planifolia HOM05D005569 ORTHO05D007052 2.1e-11 73.2 54 66.7
C08p44240 Brassica napus HOM05D005569 ORTHO05D007052 6.2e-11 71.6 50 76.0
BolC8t51970H Brassica oleracea HOM05D005569 ORTHO05D007052 6.2e-11 71.6 50 76.0
SEGI_34083 Sequoiadendron giganteum HOM05D000074 ORTHO05D000220 9.8e-09 64.3 51 64.7
Prupe.5G038700 Prunus persica HOM05D005569 ORTHO05D007052 4.9e-08 62.0 46 67.4
C08p44260 Brassica napus HOM05D005569 ORTHO05D007052 5.4e-07 58.5 45 71.1
BolC8t51972H Brassica oleracea HOM05D005569 ORTHO05D000015 2.1e-06 56.6 30 93.3


User provided reference genes

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