Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG4G1990 Aethionema arabicum HOM05D007341 ORTHO05D009075 6.6e-62 240.7 140 100.0
Thhalv10019269m.g Eutrema salsugineum HOM05D007341 ORTHO05D009075 1.3e-33 146.7 141 65.2
BcaC08g45393 Brassica carinata HOM05D007341 ORTHO05D009075 1.1e-32 143.7 135 64.4
C06p30240 Brassica napus HOM05D007341 ORTHO05D009075 1.1e-32 143.7 135 64.4
BolC6t38187H Brassica oleracea HOM05D007341 ORTHO05D009075 1.1e-32 143.7 135 64.4
CARHR072660 Cardamine hirsuta HOM05D007341 ORTHO05D009075 2.4e-32 142.5 136 62.5
A07p27380 Brassica napus HOM05D007341 ORTHO05D009075 2.1e-31 139.4 135 65.2
BraA07t30379Z Brassica rapa HOM05D007341 ORTHO05D009075 2.7e-31 139.0 135 65.2
BcaB02g07190 Brassica carinata HOM05D007341 ORTHO05D009075 3.9e-30 135.2 139 61.9
Carub.0002s2586 Capsella rubella HOM05D007341 ORTHO05D009075 4.3e-29 131.7 137 59.1
Sp5g34040 Schrenkiella parvula HOM05D007341 ORTHO05D009075 9.6e-29 130.6 138 58.0
AT1G78995 Arabidopsis thaliana HOM05D007341 ORTHO05D009075 4.8e-28 128.3 141 59.6
THA.LOC104808109 Tarenaya hassleriana HOM05D007341 ORTHO05D009075 2.6e-26 122.5 142 54.2
AL2G39450 Arabidopsis lyrata HOM05D007341 ORTHO05D009075 1.1e-24 117.1 138 56.5
Cfa002160 Carpinus fangiana HOM05D007341 ORTHO05D009075 1.6e-20 103.2 67 71.6
Gohir.A05G116700 Gossypium hirsutum HOM05D007341 ORTHO05D009075 4.8e-20 101.7 97 57.7
TWI12G0959 Tripterygium wilfordii HOM05D007341 ORTHO05D009075 4.8e-20 101.7 65 72.3
Gorai.009G121500 Gossypium raimondii HOM05D007341 ORTHO05D009075 6.2e-20 101.3 97 57.7
Gohir.D05G117600 Gossypium hirsutum HOM05D007341 ORTHO05D009075 1.1e-19 100.5 97 56.7
RcHm_v2.0_Chr2g0148351 Rosa chinensis HOM05D007341 ORTHO05D009075 1.4e-19 100.1 65 70.8
Sed0003722 Sechium edule HOM05D007341 ORTHO05D009075 1.8e-19 99.8 64 75.0
CiPaw.01G092200 Carya illinoinensis HOM05D007341 ORTHO05D009075 3.1e-19 99.0 104 56.7
GSVIVG01029444001 Vitis vinifera HOM05D007341 ORTHO05D009075 3.1e-19 99.0 61 78.7
MELO3C019561.2 Cucumis melo HOM05D007341 ORTHO05D009075 4.0e-19 98.6 64 73.4
ClCG05G010440 Citrullus lanatus HOM05D007341 ORTHO05D009075 5.3e-19 98.2 64 73.4
Lsat_1_v5_gn_9_114620 Lactuca sativa HOM05D007341 ORTHO05D009075 5.3e-19 98.2 68 69.1
QL05p085130 Quercus lobata HOM05D007341 ORTHO05D009075 5.3e-19 98.2 150 42.7
Cc06_g16890 Coffea canephora HOM05D007341 ORTHO05D009075 6.9e-19 97.8 108 55.6
MD09G1169800 Malus domestica HOM05D007341 ORTHO05D009075 9.0e-19 97.4 65 69.2
Nitab4.5_0000349g0220 Nicotiana tabacum HOM05D007341 ORTHO05D009075 9.0e-19 97.4 64 73.4
CsaV3_3G018050 Cucumis sativus L. HOM05D007341 ORTHO05D009075 1.2e-18 97.1 60 78.3
AUR62001305 Chenopodium quinoa HOM05D007341 ORTHO05D009075 1.5e-18 96.7 73 65.8
Cpa.g.sc4293.1 Carica papaya HOM05D007341 ORTHO05D009075 2.0e-18 96.3 61 75.4
AUR62025687 Chenopodium quinoa HOM05D007341 ORTHO05D009075 2.0e-18 96.3 73 64.4
ECA240G2002 Erigeron canadensis HOM05D007341 ORTHO05D009075 2.0e-18 96.3 69 68.1
CANSAT01G1666 Cannabis sativa HOM05D007341 ORTHO05D009075 2.6e-18 95.9 65 69.2
Ciclev10029418m.g Citrus clementina HOM05D007341 ORTHO05D009075 2.6e-18 95.9 66 68.2
HanXRQChr03g0072101 Helianthus annuus HOM05D007341 ORTHO05D009075 2.6e-18 95.9 67 68.7
Psat6g000680 Pisum sativum HOM05D007341 ORTHO05D009075 2.6e-18 95.9 57 78.9
PGSC0003DMG400019203 Solanum tuberosum HOM05D007341 ORTHO05D009075 2.6e-18 95.9 124 50.0
CDE05G1356 Ceratophyllum demersum HOM05D007341 ORTHO05D009075 3.4e-18 95.5 98 56.1
Haze_16246 Corylus avellana HOM05D007341 ORTHO05D009075 4.5e-18 95.1 104 51.9
Duzib235G0177 Durio zibethinus HOM05D007341 ORTHO05D009075 4.5e-18 95.1 98 56.1
Prupe.3G028000 Prunus persica HOM05D007341 ORTHO05D009075 4.5e-18 95.1 141 44.0
FvH4_6g36350 Fragaria vesca HOM05D007341 ORTHO05D009075 5.8e-18 94.7 139 38.8
FAN02G2832 Fragaria x ananassa HOM05D007341 ORTHO05D009075 5.8e-18 94.7 139 38.8
Nitab4.5_0001911g0010 Nicotiana tabacum HOM05D007341 ORTHO05D009075 5.8e-18 94.7 103 54.4
Thecc.06G049400 Theobroma cacao HOM05D007341 ORTHO05D009075 5.8e-18 94.7 122 50.0
Potri.007G003600 Populus trichocarpa HOM05D007341 ORTHO05D009075 7.6e-18 94.4 64 70.3
Sabra07G0002700 Salix brachista HOM05D007341 ORTHO05D009075 7.6e-18 94.4 64 70.3
MSTRG.26115 Avicennia marina HOM05D007341 ORTHO05D009075 1.0e-17 94.0 69 71.0
VMungo1080G1509 Vigna mungo HOM05D007341 ORTHO05D009075 1.0e-17 94.0 67 68.7
Dinv20313 Davidia involucrata HOM05D007341 ORTHO05D009075 2.2e-17 92.8 130 51.5
FAN09G2851 Fragaria x ananassa HOM05D007341 ORTHO05D009075 2.2e-17 92.8 130 43.8
FAN14G2925 Fragaria x ananassa HOM05D007341 ORTHO05D009075 2.2e-17 92.8 138 38.4
FAN14G4935 Fragaria x ananassa HOM05D007341 ORTHO05D009075 2.2e-17 92.8 138 38.4
Oeu004021.1 Olea europaea HOM05D007341 ORTHO05D009075 3.8e-17 92.0 140 47.1
CSS0015626 Camellia sinensis var. sinensis HOM05D007341 ORTHO05D009075 4.9e-17 91.7 129 46.5
Phvul.005G082000 Phaseolus vulgaris HOM05D007341 ORTHO05D009075 6.5e-17 91.3 67 65.7
Aqoxy7G02561 Aquilegia oxysepala HOM05D007341 ORTHO05D009075 8.4e-17 90.9 102 50.0
Eucgr.F04060 Eucalyptus grandis HOM05D007341 ORTHO05D009075 8.4e-17 90.9 116 52.6
LjContig00482g0010930 Lotus japonicus HOM05D007341 ORTHO05D009075 8.4e-17 90.9 59 76.3
Manes.06G177800 Manihot esculenta HOM05D007341 ORTHO05D009075 1.1e-16 90.5 114 46.5
Solyc10g086470.2 Solanum lycopersicum HOM05D007341 ORTHO05D009075 1.1e-16 90.5 124 47.6
Sopen10g035850 Solanum pennellii HOM05D007341 ORTHO05D009075 1.1e-16 90.5 124 47.6
EL10Ac7g18105 Beta vulgaris HOM05D007341 ORTHO05D009075 1.4e-16 90.1 72 61.1
Rhsim08G0252300 Rhododendron simsii HOM05D000912 ORTHO05D009075 1.4e-16 90.1 68 66.2
Glyma.15G000400 Glycine max HOM05D007341 ORTHO05D009075 2.5e-16 89.4 124 48.4
Lj9A544T49 Lonicera japonica HOM05D007341 ORTHO05D009075 2.5e-16 89.4 71 63.4
Hund18551 Selenicereus undatus HOM05D007341 ORTHO05D009075 4.2e-16 88.6 137 45.3
DCAR_027600 Daucus carota HOM05D007341 ORTHO05D009075 5.5e-16 88.2 120 47.5
Pp3c15_22740 Physcomitrium patens HOM05D007341 ORTHO05D009075 7.1e-16 87.8 60 70.0
Hma1.2p1_0422F.1_g150100 Hydrangea macrophylla HOM05D007341 ORTHO05D009075 9.3e-16 87.4 111 48.6
ATR0626G096 Amborella trichopoda HOM05D007341 ORTHO05D009075 1.2e-15 87.0 62 71.0
Nn8g41280 Nelumbo nucifera HOM05D007341 ORTHO05D009075 1.2e-15 87.0 112 50.9
TAR636G1203 Trochodendron aralioides HOM05D007341 ORTHO05D009075 1.2e-15 87.0 122 46.7
MBI13_g34919_MAGBIO Magnolia biondii HOM05D007341 ORTHO05D009075 1.6e-15 86.7 87 57.5
HPP92_026441 Vanilla planifolia HOM05D007341 ORTHO05D009075 2.1e-15 86.3 61 65.6
AagrBONN_evm.TU.Sc2ySwM_368.1307 Anthoceros agrestis HOM05D007341 ORTHO05D009075 2.7e-15 85.9 60 68.3
PGR102G3137 Punica granatum HOM05D007341 ORTHO05D009075 2.7e-15 85.9 119 46.2
Zm00001eb227230 Zea mays HOM05D007341 ORTHO05D009075 2.7e-15 85.9 61 62.3
Medtr6g004140 Medicago truncatula HOM05D007341 ORTHO05D009075 4.6e-15 85.1 134 44.0
Mapoly0061s0126 Marchantia polymorpha HOM05D007341 ORTHO05D009075 1.0e-14 84.0 62 62.9
Sc16g0003760 Simmondsia chinensis HOM05D007341 ORTHO05D009075 1.0e-14 84.0 66 63.6
PSO063G2737 Papaver somniferum HOM05D007341 ORTHO05D009075 3.0e-14 82.4 65 66.2
PSO170G4447 Papaver somniferum HOM05D007341 ORTHO05D009075 5.1e-14 81.6 65 63.1
SalBow1G7986 Salvia bowleyana HOM05D007341 ORTHO05D009075 5.1e-14 81.6 101 47.5
Lalb_Chr24g0392671 Lupinus albus HOM05D007341 ORTHO05D009075 1.1e-13 80.5 61 68.9
vmacro18722 Vaccinium macrocarpon HOM05D007341 ORTHO05D009075 1.5e-13 80.1 109 48.6
Migut.K00075 Erythranthe guttata HOM05D007341 ORTHO05D009075 2.5e-13 79.3 121 43.0
SalBow1G8719 Salvia bowleyana HOM05D007341 ORTHO05D009075 2.5e-13 79.3 100 47.0
unitig_748.g7237 Utricularia gibba HOM05D007341 ORTHO05D009075 2.5e-13 79.3 102 50.0
SGA_v2.0_scaffold94G28462 Striga asiatica HOM05D007341 ORTHO05D009075 4.3e-13 78.6 68 60.3
Ah.08g218010 Amaranthus hybridus HOM05D007341 ORTHO05D009075 2.1e-12 76.3 72 55.6
Os06g0704200 Oryza sativa ssp. japonica HOM05D007341 ORTHO05D009075 1.1e-11 73.9 62 62.9
Os02g0138100 Oryza sativa ssp. japonica HOM05D007341 ORTHO05D009075 2.4e-11 72.8 56 58.9
SMO232G0085 Selaginella moellendorffii HOM05D007341 ORTHO05D009075 3.1e-11 72.4 56 58.9
Actinidia38822 Actinidia chinensis HOM05D007341 ORTHO05D009075 4.5e-10 68.6 139 39.6
Zm00001eb231900 Zea mays HOM05D007341 ORTHO05D009075 8.5e-09 64.3 61 54.1
DCAR_011722 Daucus carota HOM05D007341 ORTHO05D009075 2.1e-07 59.7 117 39.3
Cre01.g000800 Chlamydomonas reinhardtii HOM05D007341 ORTHO05D009075 3.6e-07 58.9 68 45.6


User provided reference genes

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