Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG4G19220 Aethionema arabicum HOM05D005603 ORTHO05D006944 8.5e-251 869.8 411 100.0
Carub.0005s1753 Capsella rubella HOM05D005603 ORTHO05D006944 1.4e-240 835.9 411 94.4
AL5G31550 Arabidopsis lyrata HOM05D005603 ORTHO05D006944 2.3e-240 835.1 411 94.6
AT3G51130 Arabidopsis thaliana HOM05D005603 ORTHO05D006944 4.0e-240 834.3 411 94.4
Thhalv10010418m.g Eutrema salsugineum HOM05D005603 ORTHO05D006944 3.7e-238 827.8 411 93.7
Sp5g11080 Schrenkiella parvula HOM05D005603 ORTHO05D006944 1.3e-235 819.3 411 93.2
CARHR160730 Cardamine hirsuta HOM05D005603 ORTHO05D006944 1.3e-230 802.7 411 90.3
BcaC06g33053 Brassica carinata HOM05D005603 ORTHO05D006944 5.4e-229 797.3 399 93.2
THA.LOC104819186 Tarenaya hassleriana HOM05D005603 ORTHO05D006944 2.1e-225 785.4 399 91.7
A03p48150 Brassica napus HOM05D005603 ORTHO05D006944 1.5e-223 779.2 383 93.5
BraA03t13922Z Brassica rapa HOM05D005603 ORTHO05D006944 1.5e-223 779.2 383 93.5
BolC7t45134H Brassica oleracea HOM05D005603 ORTHO05D006944 5.4e-221 770.8 385 92.7
BraA09t39879Z Brassica rapa HOM05D005603 ORTHO05D006944 5.6e-218 760.8 396 88.6
A09p44190 Brassica napus HOM05D005603 ORTHO05D006944 1.2e-217 759.6 396 88.4
BolC8t50258H Brassica oleracea HOM05D005603 ORTHO05D006944 8.0e-217 756.9 396 88.4
C07p46180 Brassica napus HOM05D005603 ORTHO05D006944 2.3e-216 755.4 406 87.7
COL.COLO4_21962 Corchorus olitorius HOM05D005603 ORTHO05D006944 4.0e-216 754.6 400 87.2
QL06p033966 Quercus lobata HOM05D005603 ORTHO05D006944 1.3e-214 749.6 401 87.3
Gohir.A02G169100 Gossypium hirsutum HOM05D005603 ORTHO05D006944 1.9e-213 745.7 400 85.8
Prupe.7G165200 Prunus persica HOM05D005603 ORTHO05D006944 2.4e-213 745.3 403 85.9
TWI09G0997 Tripterygium wilfordii HOM05D005603 ORTHO05D006944 2.4e-213 745.3 399 86.2
Gohir.D03G010900 Gossypium hirsutum HOM05D005603 ORTHO05D006944 3.2e-213 745.0 400 85.5
Gorai.003G011300 Gossypium raimondii HOM05D005603 ORTHO05D006944 3.2e-213 745.0 400 85.5
Eucgr.I02369 Eucalyptus grandis HOM05D005603 ORTHO05D006944 2.0e-212 742.3 403 85.1
Thecc.01G023100 Theobroma cacao HOM05D005603 ORTHO05D006944 2.7e-212 741.9 400 85.8
Manes.02G101300 Manihot esculenta HOM05D005603 ORTHO05D006944 3.5e-212 741.5 398 86.9
CiPaw.07G056000 Carya illinoinensis HOM05D005603 ORTHO05D006944 6.0e-212 740.7 405 86.2
CANSAT01G2298 Cannabis sativa HOM05D005603 ORTHO05D006944 1.0e-211 740.0 397 85.9
FvH4_1g12160 Fragaria vesca HOM05D005603 ORTHO05D006944 1.3e-211 739.6 403 85.9
MD15G1249000 Malus domestica HOM05D005603 ORTHO05D006944 1.3e-211 739.6 401 85.3
Glyma.01G168600 Glycine max HOM05D005603 ORTHO05D006944 3.3e-210 734.9 405 85.4
Nn5g29214 Nelumbo nucifera HOM05D005603 ORTHO05D006944 1.6e-209 732.6 402 84.1
BcaB01g00547 Brassica carinata HOM05D005603 ORTHO05D006944 2.8e-209 731.9 372 90.1
Aqoxy5G01490 Aquilegia oxysepala HOM05D005603 ORTHO05D006944 3.6e-209 731.5 404 83.9
arahy.Tifrunner.gnm1.ann1.V913IW Arachis hypogaea HOM05D005603 ORTHO05D006944 4.7e-209 731.1 405 85.2
Ca_24898_v3 Cicer arietinum L. HOM05D005603 ORTHO05D006944 8.0e-209 730.3 405 84.2
Glyma.11G074800 Glycine max HOM05D005603 ORTHO05D006944 1.8e-208 729.2 405 84.7
RcHm_v2.0_Chr2g0099911 Rosa chinensis HOM05D005603 ORTHO05D006944 2.3e-208 728.8 403 85.1
TPR.G2333 Trifolium pratense HOM05D005603 ORTHO05D006944 2.3e-208 728.8 405 83.7
Phvul.002G111500 Phaseolus vulgaris HOM05D005603 ORTHO05D006944 4.0e-208 728.0 405 84.4
Sc03g0003440 Simmondsia chinensis HOM05D005603 ORTHO05D006944 4.0e-208 728.0 404 83.2
MELO3C007885.2 Cucumis melo HOM05D005603 ORTHO05D006944 5.2e-208 727.6 400 83.8
CsaV3_6G046890 Cucumis sativus L. HOM05D005603 ORTHO05D006944 5.2e-208 727.6 400 84.0
CSS0040106 Camellia sinensis var. sinensis HOM05D005603 ORTHO05D006944 8.9e-208 726.9 404 84.4
Sed0002868 Sechium edule HOM05D005603 ORTHO05D006944 8.9e-208 726.9 399 84.5
ClCG01G020120 Citrullus lanatus HOM05D005603 ORTHO05D006944 1.2e-207 726.5 399 84.2
MD02G1111100 Malus domestica HOM05D005603 ORTHO05D006944 1.2e-207 726.5 401 83.8
VMungo1215G2039 Vigna mungo HOM05D005603 ORTHO05D006944 1.2e-207 726.5 404 84.7
Potri.005G117200 Populus trichocarpa HOM05D005603 ORTHO05D006944 1.5e-207 726.1 398 85.4
HanXRQChr16g0531111 Helianthus annuus HOM05D005603 ORTHO05D006944 2.6e-207 725.3 402 84.1
Medtr5g021520 Medicago truncatula HOM05D005603 ORTHO05D006944 5.8e-207 724.2 406 83.7
Lj2g0023828 Lotus japonicus HOM05D005603 ORTHO05D006944 9.8e-207 723.4 411 83.5
Nitab4.5_0008176g0030 Nicotiana tabacum HOM05D005603 ORTHO05D006944 9.8e-207 723.4 418 81.1
TAR628G0819 Trochodendron aralioides HOM05D005603 ORTHO05D006944 1.7e-206 722.6 402 83.6
Potri.007G015800 Populus trichocarpa HOM05D005603 ORTHO05D006944 2.2e-206 722.2 399 83.7
Sopen02g029190 Solanum pennellii HOM05D005603 ORTHO05D006944 3.7e-206 721.5 403 83.4
Hma1.2p1_0743F.1_g211450 Hydrangea macrophylla HOM05D005603 ORTHO05D006944 1.4e-205 719.5 415 82.9
Psat2g155920 Pisum sativum HOM05D005603 ORTHO05D006944 1.4e-205 719.5 405 83.5
SGA_v2.0_scaffold47G17673 Striga asiatica HOM05D005603 ORTHO05D006944 1.4e-205 719.5 410 83.2
Ciclev10025760m.g Citrus clementina HOM05D005603 ORTHO05D006944 1.9e-205 719.2 405 82.2
Duzib147G0771 Durio zibethinus HOM05D005603 ORTHO05D006944 7.0e-205 717.2 387 85.5
arahy.Tifrunner.gnm1.ann1.8YZ064 Arachis hypogaea HOM05D005603 ORTHO05D006944 9.2e-205 716.8 434 79.5
MSTRG.15764 Avicennia marina HOM05D005603 ORTHO05D006944 6.0e-204 714.1 402 82.3
GSVIVG01018824001 Vitis vinifera HOM05D005603 ORTHO05D006944 1.7e-203 712.6 390 84.6
AUR62007651 Chenopodium quinoa HOM05D005603 ORTHO05D006944 3.0e-203 711.8 401 82.0
TAR376G0194 Trochodendron aralioides HOM05D005603 ORTHO05D006944 6.6e-203 710.7 403 82.9
DCAR_021493 Daucus carota HOM05D005603 ORTHO05D006944 1.5e-202 709.5 404 81.4
PSO541G2355 Papaver somniferum HOM05D005603 ORTHO05D006944 3.3e-202 708.4 403 81.9
PSO675G2068 Papaver somniferum HOM05D005603 ORTHO05D006944 3.3e-202 708.4 403 81.9
ATR0620G128 Amborella trichopoda HOM05D005603 ORTHO05D006944 1.2e-201 706.4 403 82.1
Hund14030 Selenicereus undatus HOM05D005603 ORTHO05D006944 1.2e-201 706.4 401 81.0
Cc07_g10420 Coffea canephora HOM05D005603 ORTHO05D006944 3.6e-201 704.9 391 84.1
CDE05G2538 Ceratophyllum demersum HOM05D005603 ORTHO05D006944 4.7e-201 704.5 402 83.1
Lsat_1_v5_gn_3_73720 Lactuca sativa HOM05D005603 ORTHO05D006944 6.2e-201 704.1 400 82.0
Migut.L00039 Erythranthe guttata HOM05D005603 ORTHO05D006944 8.1e-201 703.7 403 82.1
Nitab4.5_0000912g0020 Nicotiana tabacum HOM05D005603 ORTHO05D006944 4.0e-200 701.4 410 80.5
Oeu035330.1 Olea europaea HOM05D005603 ORTHO05D006944 1.5e-199 699.5 403 80.6
Hund16476 Selenicereus undatus HOM05D005603 ORTHO05D006944 2.0e-199 699.1 432 77.1
PGSC0003DMG400003547 Solanum tuberosum HOM05D005603 ORTHO05D006944 2.0e-199 699.1 389 83.3
ECA246G4842 Erigeron canadensis HOM05D005603 ORTHO05D006944 2.6e-199 698.7 390 82.8
Peaxi162Scf00083g01233 Petunia axillaris HOM05D005603 ORTHO05D006944 2.6e-199 698.7 395 82.3
SalBow8G5567 Salvia bowleyana HOM05D005603 ORTHO05D006944 2.9e-198 695.3 416 79.3
EL10As8g23850 Beta vulgaris HOM05D005603 ORTHO05D006944 1.9e-197 692.6 396 80.8
CSS0042462 Camellia sinensis var. sinensis HOM05D005603 ORTHO05D006944 4.1e-197 691.4 402 80.8
Sed0017160 Sechium edule HOM05D005603 ORTHO05D006944 5.4e-197 691.0 402 80.6
FAN28G0526 Fragaria x ananassa HOM05D005603 ORTHO05D006944 7.1e-197 690.6 403 81.4
C08p26410 Brassica napus HOM05D005603 ORTHO05D006944 9.2e-197 690.3 353 89.8
Haze_03808 Corylus avellana HOM05D005603 ORTHO05D006944 3.5e-196 688.3 401 81.0
Cpa.g.sc6.214 Carica papaya HOM05D005603 ORTHO05D006944 4.6e-196 688.0 420 78.6
Os06g0714000 Oryza sativa ssp. japonica HOM05D005603 ORTHO05D006944 7.8e-196 687.2 399 80.7
CSS0001882 Camellia sinensis var. sinensis HOM05D005603 ORTHO05D006944 1.0e-195 686.8 402 80.1
HPP92_025419 Vanilla planifolia HOM05D005603 ORTHO05D006944 3.3e-194 681.8 400 80.2
FAN23G1635 Fragaria x ananassa HOM05D005603 ORTHO05D006944 8.1e-193 677.2 397 80.6
CAN.G358.2 Capsicum annuum HOM05D005603 ORTHO05D006944 1.8e-192 676.0 391 80.1
Rhsim08G0035200 Rhododendron simsii HOM05D005603 ORTHO05D006944 2.6e-191 672.2 415 77.3
TWI53G1238 Tripterygium wilfordii HOM05D005603 ORTHO05D006944 3.2e-189 665.2 364 84.9
FAN19G0288 Fragaria x ananassa HOM05D005603 ORTHO05D006944 1.6e-188 662.9 387 81.4
MSTRG.3829 Avicennia marina HOM05D005603 ORTHO05D006944 3.1e-184 648.7 403 75.7
FAN26G2705 Fragaria x ananassa HOM05D005603 ORTHO05D006944 4.0e-184 648.3 380 80.8
Sabra05G0096200 Salix brachista HOM05D005603 ORTHO05D006944 2.9e-182 642.1 407 76.9
Lj4C215G4 Lonicera japonica HOM05D005603 ORTHO05D006944 3.8e-182 641.7 404 76.0
Duzib264G0505 Durio zibethinus HOM05D005603 ORTHO05D006944 6.4e-182 641.0 400 76.5
unitig_32.g11821 Utricularia gibba HOM05D005603 ORTHO05D006944 1.6e-180 636.3 396 75.3
vmacro22086 Vaccinium macrocarpon HOM05D005603 ORTHO05D006944 1.7e-179 632.9 357 82.1
Sabra07G0013000 Salix brachista HOM05D005603 ORTHO05D006944 1.9e-178 629.4 401 75.3
Zm00001eb227930 Zea mays HOM05D005603 ORTHO05D006944 1.7e-174 616.3 399 73.7
vmacro18394 Vaccinium macrocarpon HOM05D005603 ORTHO05D006944 1.9e-170 602.8 341 82.1
Lalb_Chr16g0377611 Lupinus albus HOM05D005603 ORTHO05D006944 6.2e-169 597.8 324 83.3
Pp3c2_6370 Physcomitrium patens HOM05D005603 ORTHO05D006944 1.0e-163 580.5 393 68.4
Ah.02g124640 Amaranthus hybridus HOM05D005603 ORTHO05D006944 1.8e-163 579.7 392 71.4
AagrBONN_evm.TU.Sc2ySwM_228.543 Anthoceros agrestis HOM05D005603 ORTHO05D006944 1.6e-161 573.2 398 68.1
Pp3c10_8990 Physcomitrium patens HOM05D005603 ORTHO05D006944 1.0e-158 563.9 394 66.5
SMO117G0153 Selaginella moellendorffii HOM05D005603 ORTHO05D006944 3.8e-158 562.0 391 66.5
Dinv40059 Davidia involucrata HOM05D005603 ORTHO05D006944 5.1e-155 551.6 305 83.6
Dinv33602 Davidia involucrata HOM05D005603 ORTHO05D006944 2.2e-153 546.2 306 82.7
SEGI_22640 Sequoiadendron giganteum HOM05D005603 ORTHO05D006944 4.2e-149 531.9 345 73.3
Actinidia31012 Actinidia chinensis HOM05D005603 ORTHO05D006944 1.4e-147 526.9 306 80.7
Mapoly0152s0028 Marchantia polymorpha HOM05D005603 ORTHO05D006944 1.5e-146 523.5 400 63.0
Mapoly0094s0075 Marchantia polymorpha HOM05D005603 ORTHO05D006944 1.8e-139 500.0 393 60.8
Lalb_Chr09g0321921 Lupinus albus HOM05D005603 ORTHO05D006944 2.7e-116 422.9 239 84.1
SMO037G0002 Selaginella moellendorffii HOM05D005603 ORTHO05D006944 1.5e-101 374.0 266 65.8
Solyc02g075630.3 Solanum lycopersicum HOM05D005603 ORTHO05D006944 7.0e-96 355.1 208 79.3
Atru.chr3.766 Acer truncatum HOM05D005603 ORTHO05D006944 3.7e-89 332.8 186 82.3
Nn015s41468 Nelumbo nucifera HOM05D005603 ORTHO05D006944 3.6e-84 316.2 171 83.0
Migut.H02480 Erythranthe guttata HOM05D005603 ORTHO05D006944 4.7e-84 315.8 373 49.9
Lalb_Chr09g0321931 Lupinus albus HOM05D005603 ORTHO05D006944 6.8e-83 312.0 163 85.3
Actinidia26078 Actinidia chinensis HOM05D005603 ORTHO05D006944 1.2e-82 311.2 218 71.1
PRCOL_00000516 Prasinoderma coloniale HOM05D005603 ORTHO05D006944 1.9e-80 303.9 435 39.5
CBR_g36682 Chara braunii HOM05D005603 ORTHO05D000002 2.4e-75 287.0 221 62.0
BcaC06g33054 Brassica carinata HOM05D005603 ORTHO05D006944 1.9e-72 277.3 141 90.1
Nn015s41469 Nelumbo nucifera HOM05D005603 ORTHO05D006944 3.0e-70 270.0 146 82.9
CBR_g36680 Chara braunii HOM05D005603 ORTHO05D006944 5.6e-61 239.2 172 64.0
Atru.chr2.40 Acer truncatum HOM05D005603 ORTHO05D006944 2.1e-44 184.1 190 52.6
Actinidia31013 Actinidia chinensis HOM05D005603 ORTHO05D006944 1.4e-30 138.3 72 88.9
RcHm_v2.0_Chr7g0231521 Rosa chinensis HOM05D005603 ORTHO05D006944 9.7e-21 105.5 198 38.4
Cfa027245 Carpinus fangiana HOM05D005603 ORTHO05D006944 1.0e-14 85.5 277 28.2
COL.COLO4_32114 Corchorus olitorius HOM05D000931 ORTHO05D002226 4.7e-07 60.1 51 62.7


User provided reference genes

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