Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG4G19160 Aethionema arabicum HOM05D005163 ORTHO05D006462 0.0e+00 1424.8 698 100.0
CARHR160630 Cardamine hirsuta HOM05D005163 ORTHO05D006462 0.0e+00 1360.5 696 94.3
Thhalv10010167m.g Eutrema salsugineum HOM05D005163 ORTHO05D006462 0.0e+00 1352.4 698 93.4
Sp5g11160 Schrenkiella parvula HOM05D005163 ORTHO05D006462 0.0e+00 1351.7 699 93.0
AL5G31470 Arabidopsis lyrata HOM05D005163 ORTHO05D006462 0.0e+00 1347.4 700 92.9
Carub.0005s1745 Capsella rubella HOM05D005163 ORTHO05D006462 0.0e+00 1345.9 698 92.6
AT3G51050 Arabidopsis thaliana HOM05D005163 ORTHO05D006462 0.0e+00 1343.6 700 92.7
C07p46120 Brassica napus HOM05D005163 ORTHO05D006462 0.0e+00 1335.5 697 91.7
BolC7t45128H Brassica oleracea HOM05D005163 ORTHO05D006462 0.0e+00 1327.4 691 91.6
A03p48100 Brassica napus HOM05D005163 ORTHO05D006462 0.0e+00 1310.4 717 88.4
THA.LOC104826639 Tarenaya hassleriana HOM05D005163 ORTHO05D006462 0.0e+00 1281.5 697 88.4
BcaC06g33060 Brassica carinata HOM05D005163 ORTHO05D006462 0.0e+00 1204.9 693 84.6
Manes.02G100000 Manihot esculenta HOM05D005163 ORTHO05D006462 0.0e+00 1199.9 695 81.6
Ciclev10025040m.g Citrus clementina HOM05D005163 ORTHO05D006462 0.0e+00 1194.1 695 81.4
Thecc.01G025400 Theobroma cacao HOM05D005163 ORTHO05D006462 0.0e+00 1193.3 695 80.4
GSVIVG01018847001 Vitis vinifera HOM05D005163 ORTHO05D006462 0.0e+00 1186.0 695 80.9
Gohir.A12G062100 Gossypium hirsutum HOM05D005163 ORTHO05D006462 0.0e+00 1184.9 695 80.7
TWI73G0422 Tripterygium wilfordii HOM05D005163 ORTHO05D006462 0.0e+00 1184.1 692 81.2
Atru.chr3.745 Acer truncatum HOM05D005163 ORTHO05D006462 0.0e+00 1182.2 695 80.6
Gorai.008G065200 Gossypium raimondii HOM05D005163 ORTHO05D006462 0.0e+00 1178.7 695 80.3
Potri.007G017600 Populus trichocarpa HOM05D005163 ORTHO05D006462 0.0e+00 1176.4 696 80.6
Eucgr.J02388 Eucalyptus grandis HOM05D005163 ORTHO05D006462 0.0e+00 1170.6 695 79.6
PGR102G2820 Punica granatum HOM05D005163 ORTHO05D006462 0.0e+00 1168.3 695 78.6
Potri.005G118300 Populus trichocarpa HOM05D005163 ORTHO05D006462 0.0e+00 1167.9 698 80.2
Cfa006924 Carpinus fangiana HOM05D005163 ORTHO05D006462 0.0e+00 1167.5 695 80.0
Hma1.2p1_0913F.1_g236050 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 0.0e+00 1164.8 695 79.9
Lj4C212G4 Lonicera japonica HOM05D005163 ORTHO05D006462 0.0e+00 1164.4 695 79.7
Sabra07G0015000 Salix brachista HOM05D005163 ORTHO05D006462 0.0e+00 1161.0 695 79.1
Cc07_g10240 Coffea canephora HOM05D005163 ORTHO05D006462 0.0e+00 1160.2 695 79.4
Peaxi162Scf00084g01221 Petunia axillaris HOM05D005163 ORTHO05D006462 0.0e+00 1158.3 695 79.3
Sed0007947 Sechium edule HOM05D005163 ORTHO05D006462 0.0e+00 1155.6 696 79.2
MELO3C007876.2 Cucumis melo HOM05D005163 ORTHO05D006462 0.0e+00 1153.7 696 79.0
Nitab4.5_0000723g0040 Nicotiana tabacum HOM05D005163 ORTHO05D006462 0.0e+00 1153.7 694 78.5
Nitab4.5_0007070g0020 Nicotiana tabacum HOM05D005163 ORTHO05D006462 0.0e+00 1152.1 695 78.7
arahy.Tifrunner.gnm1.ann1.U51VHD Arachis hypogaea HOM05D005163 ORTHO05D006462 0.0e+00 1151.7 695 79.3
arahy.Tifrunner.gnm1.ann1.U2HICA Arachis hypogaea HOM05D005163 ORTHO05D006462 0.0e+00 1150.6 695 79.1
ClCG01G020030 Citrullus lanatus HOM05D005163 ORTHO05D006462 0.0e+00 1149.8 700 78.4
Sc03g0003300 Simmondsia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1149.0 693 78.8
TAR376G0780 Trochodendron aralioides HOM05D005163 ORTHO05D006462 0.0e+00 1147.5 697 77.3
CsaV3_6G046790 Cucumis sativus L. HOM05D005163 ORTHO05D006462 0.0e+00 1145.2 695 78.6
HanXRQChr14g0441521 Helianthus annuus HOM05D005163 ORTHO05D006462 0.0e+00 1144.8 695 77.7
QL06p034609 Quercus lobata HOM05D005163 ORTHO05D006462 0.0e+00 1144.4 695 78.1
VMungo1215G3295 Vigna mungo HOM05D005163 ORTHO05D006462 0.0e+00 1144.4 695 78.8
Ah.02g124830 Amaranthus hybridus HOM05D005163 ORTHO05D006462 0.0e+00 1143.6 693 78.5
Migut.H02494 Erythranthe guttata HOM05D005163 ORTHO05D006462 0.0e+00 1143.6 695 77.3
Phvul.002G166800 Phaseolus vulgaris HOM05D005163 ORTHO05D006462 0.0e+00 1143.6 695 78.6
Lj2g0010053 Lotus japonicus HOM05D005163 ORTHO05D006462 0.0e+00 1143.3 696 78.3
HanXRQChr07g0191281 Helianthus annuus HOM05D005163 ORTHO05D006462 0.0e+00 1142.9 697 77.6
Sed0022975 Sechium edule HOM05D005163 ORTHO05D006462 0.0e+00 1141.7 695 77.8
Glyma.01G170600 Glycine max HOM05D005163 ORTHO05D006462 0.0e+00 1140.6 696 78.4
CAN.G358.18 Capsicum annuum HOM05D005163 ORTHO05D006462 0.0e+00 1140.2 695 78.0
Hund16465 Selenicereus undatus HOM05D005163 ORTHO05D006462 0.0e+00 1139.4 699 77.5
PSO541G1023 Papaver somniferum HOM05D005163 ORTHO05D006462 0.0e+00 1139.0 698 77.1
Aqoxy5G01510 Aquilegia oxysepala HOM05D005163 ORTHO05D006462 0.0e+00 1138.3 697 77.0
Sopen02g029360 Solanum pennellii HOM05D005163 ORTHO05D006462 0.0e+00 1138.3 695 77.7
PGSC0003DMG400003539 Solanum tuberosum HOM05D005163 ORTHO05D006462 0.0e+00 1138.3 695 77.7
Rhsim08G0123900 Rhododendron simsii HOM05D005163 ORTHO05D006462 0.0e+00 1137.5 722 75.6
Solyc02g084690.3 Solanum lycopersicum HOM05D005163 ORTHO05D006462 0.0e+00 1136.7 695 77.6
Glyma.11G072700 Glycine max HOM05D005163 ORTHO05D006462 0.0e+00 1135.9 695 78.3
RcHm_v2.0_Chr2g0100261 Rosa chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1133.6 694 77.7
SalBow8G4654 Salvia bowleyana HOM05D005163 ORTHO05D006462 0.0e+00 1133.6 695 77.1
Haze_03825 Corylus avellana HOM05D005163 ORTHO05D006462 0.0e+00 1133.2 674 79.4
FvH4_1g12400 Fragaria vesca HOM05D005163 ORTHO05D006462 0.0e+00 1132.5 694 77.4
Ca_24882_v3 Cicer arietinum L. HOM05D005163 ORTHO05D006462 0.0e+00 1132.1 695 77.6
MD15G1250800 Malus domestica HOM05D005163 ORTHO05D006462 0.0e+00 1130.9 696 77.3
MSTRG.23270 Avicennia marina HOM05D005163 ORTHO05D006462 0.0e+00 1129.0 696 77.4
Psat2g156920 Pisum sativum HOM05D005163 ORTHO05D006462 0.0e+00 1127.9 695 77.8
TPR.G2381 Trifolium pratense HOM05D005163 ORTHO05D006462 0.0e+00 1125.9 695 77.1
PSO675G4614 Papaver somniferum HOM05D005163 ORTHO05D006462 0.0e+00 1125.2 698 76.5
MD02G1137100 Malus domestica HOM05D005163 ORTHO05D006462 0.0e+00 1124.8 696 76.6
Gorai.007G198300 Gossypium raimondii HOM05D005163 ORTHO05D006462 0.0e+00 1124.4 695 75.5
Lalb_Chr16g0377681 Lupinus albus HOM05D005163 ORTHO05D006462 0.0e+00 1121.7 695 77.4
Actinidia19230 Actinidia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1120.9 697 76.8
Gohir.A11G178900 Gossypium hirsutum HOM05D005163 ORTHO05D006462 0.0e+00 1120.9 695 75.3
Lalb_Chr05g0212611 Lupinus albus HOM05D005163 ORTHO05D006462 0.0e+00 1120.1 695 77.3
Lsat_1_v5_gn_2_78240 Lactuca sativa HOM05D005163 ORTHO05D006462 0.0e+00 1113.6 700 75.6
Medtr5g021150 Medicago truncatula HOM05D005163 ORTHO05D006462 0.0e+00 1113.2 696 76.9
CANSAT01G3091 Cannabis sativa HOM05D005163 ORTHO05D006462 0.0e+00 1109.7 695 76.3
Oeu024029.1 Olea europaea HOM05D005163 ORTHO05D006462 0.0e+00 1105.9 697 75.5
Prupe.7G163500 Prunus persica HOM05D005163 ORTHO05D006462 0.0e+00 1099.3 696 76.1
EL10As8g23870 Beta vulgaris HOM05D005163 ORTHO05D006462 0.0e+00 1097.8 694 75.9
AUR62007635 Chenopodium quinoa HOM05D005163 ORTHO05D006462 0.0e+00 1096.6 720 74.2
SGA_v2.0_scaffold280G46851 Striga asiatica HOM05D005163 ORTHO05D006462 0.0e+00 1085.1 718 73.8
Duzib147G0248 Durio zibethinus HOM05D005163 ORTHO05D006462 0.0e+00 1083.9 695 75.0
AUR62004121 Chenopodium quinoa HOM05D005163 ORTHO05D006462 0.0e+00 1081.6 742 72.0
Nn5g29168 Nelumbo nucifera HOM05D005163 ORTHO05D006462 0.0e+00 1080.1 697 74.5
Oeu005146.2 Olea europaea HOM05D005163 ORTHO05D006462 0.0e+00 1079.7 750 70.7
FAN28G1722 Fragaria x ananassa HOM05D005163 ORTHO05D006462 0.0e+00 1078.2 694 74.6
Actinidia26108 Actinidia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1076.6 697 74.7
ATR0661G156 Amborella trichopoda HOM05D005163 ORTHO05D006462 9.5e-311 1069.7 697 72.7
ECA238G0541 Erigeron canadensis HOM05D005163 ORTHO05D006462 4.7e-310 1067.4 647 77.1
HPP92_021000 Vanilla planifolia HOM05D005163 ORTHO05D006462 1.2e-308 1062.8 694 72.6
CDE04G3147 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 5.8e-308 1060.4 678 73.5
DCAR_031672 Daucus carota HOM05D005163 ORTHO05D006462 1.2e-305 1052.7 695 74.5
Duzib187G1632 Durio zibethinus HOM05D005163 ORTHO05D006462 7.8e-305 1050.0 696 73.4
Cpa.g.sc6.195 Carica papaya HOM05D005163 ORTHO05D006462 1.7e-304 1048.9 695 74.5
FAN19G3097 Fragaria x ananassa HOM05D005163 ORTHO05D006462 1.1e-303 1046.2 682 73.8
CSS0019296 Camellia sinensis var. sinensis HOM05D005163 ORTHO05D006462 9.5e-303 1043.1 612 80.6
FAN23G1678 Fragaria x ananassa HOM05D005163 ORTHO05D006462 8.1e-302 1040.0 682 73.0
Os02g0100700 Oryza sativa ssp. japonica HOM05D005163 ORTHO05D006462 1.8e-293 1012.3 703 69.0
Zm00001eb228990 Zea mays HOM05D005163 ORTHO05D006462 7.8e-289 996.9 703 68.4
Gohir.D12G062000 Gossypium hirsutum HOM05D005163 ORTHO05D006462 1.2e-284 983.0 582 79.6
COL.COLO4_21984 Corchorus olitorius HOM05D005163 ORTHO05D006462 3.9e-272 941.4 639 71.7
Sabra05G0097300 Salix brachista HOM05D005163 ORTHO05D006462 6.7e-256 887.5 709 64.9
CiPaw.07G054500 Carya illinoinensis HOM05D005163 ORTHO05D006462 2.2e-254 882.5 540 78.3
Gohir.D11G186500 Gossypium hirsutum HOM05D005163 ORTHO05D006462 6.3e-254 880.9 582 71.5
Mapoly0159s0016 Marchantia polymorpha HOM05D005163 ORTHO05D006462 8.8e-240 833.9 700 59.0
Dinv40040 Davidia involucrata HOM05D005163 ORTHO05D006462 1.8e-229 799.7 538 71.9
Pp3c2_37540 Physcomitrium patens HOM05D005163 ORTHO05D006462 1.4e-221 773.5 714 54.9
Pp3c2_36750 Physcomitrium patens HOM05D005163 ORTHO05D006462 1.0e-219 767.3 704 55.5
Pp3c2_36751 Physcomitrium patens HOM05D005163 ORTHO05D006462 1.0e-219 767.3 704 55.5
SMO340G0175 Selaginella moellendorffii HOM05D005163 ORTHO05D006462 2.3e-216 756.1 698 53.9
Pp3c11_13530 Physcomitrium patens HOM05D005163 ORTHO05D006462 4.4e-215 751.9 699 54.5
AagrBONN_evm.TU.Sc2ySwM_368.2341 Anthoceros agrestis HOM05D005163 ORTHO05D006462 1.7e-211 740.0 712 54.8
vmacro17732 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 4.2e-210 735.3 473 75.1
FAN26G0993 Fragaria x ananassa HOM05D005163 ORTHO05D006462 6.2e-177 625.2 387 76.0
C08p26360 Brassica napus HOM05D005163 ORTHO05D006462 1.6e-164 583.9 504 63.5
CBR_g41477 Chara braunii HOM05D005163 ORTHO05D006462 1.8e-160 570.5 721 43.4
unitig_699.g19557 Utricularia gibba HOM05D005163 ORTHO05D006462 3.3e-146 523.1 377 67.1
MCO09G435 Micromonas commoda HOM05D005163 ORTHO05D006462 2.8e-113 413.7 773 36.2
Cre07.g336050 Chlamydomonas reinhardtii HOM05D005163 ORTHO05D006462 4.5e-103 379.8 820 34.4
Dinv33585 Davidia involucrata HOM05D005163 ORTHO05D006462 1.1e-101 375.2 248 73.0
MBI01_g27921_MAGBIO Magnolia biondii HOM05D005163 ORTHO05D006462 1.3e-94 351.7 334 54.5
SEGI_18766 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 1.4e-91 341.7 270 61.5
BcaC07g39583 Brassica carinata HOM05D005163 ORTHO05D006462 2.3e-91 340.9 247 71.3
A09p44140 Brassica napus HOM05D005163 ORTHO05D006462 8.6e-78 295.8 235 67.7
unitig_699.g19558 Utricularia gibba HOM05D005163 ORTHO05D006462 1.5e-74 285.0 180 75.0
Hma1.2p1_0913F.1_g236060 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 5.4e-72 276.6 242 59.5
SHI08600 Sapria himalayana HOM05D005163 ORTHO05D006462 1.0e-70 272.3 166 75.9
Dinv33586 Davidia involucrata HOM05D005163 ORTHO05D006462 3.1e-67 260.8 193 65.8
PRCOL_00007058 Prasinoderma coloniale HOM05D005163 ORTHO05D006462 1.2e-63 248.8 631 31.5
BcaB05g23544 Brassica carinata HOM05D005163 ORTHO05D006462 1.7e-54 218.4 138 82.6
SEGI_33135 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 8.4e-49 199.5 124 71.8
BraA09t39874Z Brassica rapa HOM05D005163 ORTHO05D006462 1.4e-43 182.2 97 89.7
Dinv33584 Davidia involucrata HOM05D005163 ORTHO05D006462 2.2e-41 174.9 139 64.7
CDE12G0395 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 4.9e-33 147.1 232 40.9
Sabra07G0015100 Salix brachista HOM05D005163 ORTHO05D006462 2.7e-31 141.4 75 86.7
vmacro17731 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 1.5e-29 135.6 76 80.3
Hund14017 Selenicereus undatus HOM05D005163 ORTHO05D006462 1.3e-25 122.5 76 72.4
TAR625G0301 Trochodendron aralioides HOM05D005163 ORTHO05D006462 1.3e-17 95.9 90 53.3
SHI08598 Sapria himalayana HOM05D005163 ORTHO05D006462 2.1e-15 88.6 87 52.9
BolC8t50252H Brassica oleracea HOM05D005163 ORTHO05D041294 1.4e-14 85.9 50 82.0
C08p26350 Brassica napus HOM05D005163 ORTHO05D041294 1.1e-13 82.8 50 76.0
MBI01_g27920_MAGBIO Magnolia biondii HOM05D005163 ORTHO05D000004 6.7e-06 57.0 33 75.8


User provided reference genes

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