Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG4G18060 Aethionema arabicum HOM05D003381 ORTHO05D003880 1.9e-39 165.6 100 100.0
AL5G29410 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 1.2e-25 119.8 94 69.1
AT3G49570 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 1.2e-25 119.8 94 69.1
Carub.0005s1590 Capsella rubella HOM05D003381 ORTHO05D003880 1.6e-25 119.4 98 67.3
A06p18190 Brassica napus HOM05D003381 ORTHO05D003880 3.5e-25 118.2 94 69.1
BraA06t24903Z Brassica rapa HOM05D003381 ORTHO05D003880 3.5e-25 118.2 94 69.1
BolC8t50073H Brassica oleracea HOM05D003381 ORTHO05D003880 6.0e-25 117.5 94 68.1
CARHR158590 Cardamine hirsuta HOM05D003381 ORTHO05D003880 6.6e-24 114.0 86 68.6
BcaC07g39418 Brassica carinata HOM05D003381 ORTHO05D003880 8.7e-24 113.6 93 65.6
CARHR158580 Cardamine hirsuta HOM05D003381 ORTHO05D003880 1.1e-23 113.2 94 74.5
Carub.0005s1591 Capsella rubella HOM05D003381 ORTHO05D003880 7.3e-23 110.5 90 68.9
Sp5g12530 Schrenkiella parvula HOM05D003381 ORTHO05D003880 7.3e-23 110.5 85 63.5
AT5G24660 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 9.6e-23 110.2 86 66.3
Thhalv10005368m.g Eutrema salsugineum HOM05D003381 ORTHO05D003880 9.6e-23 110.2 87 65.5
BcaC07g39421 Brassica carinata HOM05D003381 ORTHO05D003880 1.3e-22 109.8 90 66.7
CARHR188800 Cardamine hirsuta HOM05D003381 ORTHO05D003880 1.6e-22 109.4 86 66.3
AL6G36270 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 2.8e-22 108.6 86 66.3
BcaC07g39419 Brassica carinata HOM05D003381 ORTHO05D003880 2.8e-22 108.6 82 69.5
Sp2g22730 Schrenkiella parvula HOM05D003381 ORTHO05D003880 2.8e-22 108.6 87 64.4
Sp5g12540 Schrenkiella parvula HOM05D003381 ORTHO05D003880 2.8e-22 108.6 96 64.6
Thhalv10010815m.g Eutrema salsugineum HOM05D003381 ORTHO05D003880 3.6e-22 108.2 87 67.8
AL5G29420 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 4.8e-22 107.8 90 66.7
BcaB01g00694 Brassica carinata HOM05D003381 ORTHO05D003880 1.1e-21 106.7 94 62.8
Carub.0006s2252 Capsella rubella HOM05D003381 ORTHO05D003880 1.1e-21 106.7 89 61.8
A06p18160 Brassica napus HOM05D003381 ORTHO05D003880 1.4e-21 106.3 90 63.3
Aa31LG11G3910 Aethionema arabicum HOM05D003381 ORTHO05D003880 2.4e-21 105.5 86 65.1
BcaNung02004 Brassica carinata HOM05D003381 ORTHO05D003880 6.9e-21 104.0 85 63.5
C07p43060 Brassica napus HOM05D003381 ORTHO05D003880 6.9e-21 104.0 85 63.5
BolC7t44833H Brassica oleracea HOM05D003381 ORTHO05D003880 6.9e-21 104.0 85 63.5
AL6G36260 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 2.0e-20 102.4 86 61.6
A06p35480 Brassica napus HOM05D003381 ORTHO05D003880 2.0e-20 102.4 85 63.5
BraA06t26471Z Brassica rapa HOM05D003381 ORTHO05D003880 2.0e-20 102.4 85 63.5
AT5G24655 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 1.7e-19 99.4 86 59.3
C08p24550 Brassica napus HOM05D003381 ORTHO05D003880 1.7e-19 99.4 80 65.0
BolC8t50074H Brassica oleracea HOM05D003381 ORTHO05D003880 1.7e-19 99.4 80 65.0
BcaC03g17951 Brassica carinata HOM05D003381 ORTHO05D003880 2.2e-19 99.0 89 60.7
C02p60110 Brassica napus HOM05D003381 ORTHO05D003880 2.2e-19 99.0 89 60.7
BolC2t12066H Brassica oleracea HOM05D003381 ORTHO05D003880 2.2e-19 99.0 89 60.7
BraA02t08981Z Brassica rapa HOM05D003381 ORTHO05D003880 4.9e-19 97.8 89 59.6
Carub.0006s2251 Capsella rubella HOM05D003381 ORTHO05D003880 1.4e-18 96.3 93 57.0
THA.LOC104798994 Tarenaya hassleriana HOM05D003381 ORTHO05D003880 1.0e-16 90.1 88 55.7
BcaC09g49963 Brassica carinata HOM05D003381 ORTHO05D003880 3.3e-15 85.1 61 73.8
AT3G49580 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 1.3e-11 73.2 71 59.2
Sopen06g029340 Solanum pennellii HOM05D003381 ORTHO05D003880 2.9e-11 72.0 89 47.2
Lj1g0021256 Lotus japonicus HOM05D003381 ORTHO05D003880 8.4e-11 70.5 99 47.5
unitig_60.g25635 Utricularia gibba HOM05D003381 ORTHO05D003880 8.4e-11 70.5 79 49.4
Cpa.g.sc3.189 Carica papaya HOM05D003381 ORTHO05D003880 2.5e-10 68.9 78 51.3
Dinv17275 Davidia involucrata HOM05D003381 ORTHO05D003880 2.5e-10 68.9 107 43.0
Lalb_Chr04g0252571 Lupinus albus HOM05D003381 ORTHO05D003880 2.5e-10 68.9 95 44.2
A02p40150 Brassica napus HOM05D003381 ORTHO05D003880 3.2e-10 68.6 59 61.0
Atru.chr12.2499 Acer truncatum HOM05D003381 ORTHO05D003880 4.2e-10 68.2 78 47.4
Atru.chr12.2523 Acer truncatum HOM05D003381 ORTHO05D003880 4.2e-10 68.2 78 47.4
Ca_16840_v3 Cicer arietinum L. HOM05D003381 ORTHO05D003880 7.1e-10 67.4 91 44.0
HanXRQChr08g0225771 Helianthus annuus HOM05D003381 ORTHO05D003880 7.1e-10 67.4 79 54.4
HanXRQChr08g0225851 Helianthus annuus HOM05D003381 ORTHO05D003880 7.1e-10 67.4 79 54.4
Lalb_Chr10g0102971 Lupinus albus HOM05D003381 ORTHO05D003880 7.1e-10 67.4 84 45.2
TPR.G35911 Trifolium pratense HOM05D003381 ORTHO05D003880 7.1e-10 67.4 87 47.1
Phvul.009G040500 Phaseolus vulgaris HOM05D003381 ORTHO05D003880 9.3e-10 67.0 85 44.7
Peaxi162Scf00007g00254 Petunia axillaris HOM05D003381 ORTHO05D003880 1.6e-09 66.2 82 47.6
CAN.G303.62 Capsicum annuum HOM05D003381 ORTHO05D003880 2.1e-09 65.9 79 48.1
ECA233G1855 Erigeron canadensis HOM05D003381 ORTHO05D003880 2.1e-09 65.9 82 54.9
HanXRQChr08g0225861 Helianthus annuus HOM05D003381 ORTHO05D003880 2.1e-09 65.9 82 48.8
Psat5g070520 Pisum sativum HOM05D003381 ORTHO05D003880 2.1e-09 65.9 91 45.1
Glyma.06G139300 Glycine max HOM05D003381 ORTHO05D003880 2.7e-09 65.5 86 57.0
HanXRQChr08g0225881 Helianthus annuus HOM05D003381 ORTHO05D003880 2.7e-09 65.5 82 52.4
Hma1.2p1_0115F.1_g055840 Hydrangea macrophylla HOM05D003381 ORTHO05D003880 2.7e-09 65.5 83 48.2
AUR62028119 Chenopodium quinoa HOM05D003381 ORTHO05D003880 4.6e-09 64.7 78 53.8
Lalb_Chr08g0239391 Lupinus albus HOM05D003381 ORTHO05D003880 6.0e-09 64.3 78 43.6
Medtr3g093400 Medicago truncatula HOM05D003381 ORTHO05D003880 6.0e-09 64.3 85 45.9
Nitab4.5_0007121g0010 Nicotiana tabacum HOM05D003381 ORTHO05D003880 6.0e-09 64.3 77 48.1
Psat5g070560 Pisum sativum HOM05D003381 ORTHO05D003880 6.0e-09 64.3 80 56.2
Sed0013785 Sechium edule HOM05D003381 ORTHO05D003880 6.0e-09 64.3 76 48.7
CSS0002942 Camellia sinensis var. sinensis HOM05D003381 ORTHO05D003880 7.9e-09 63.9 92 57.6
Migut.F00966 Erythranthe guttata HOM05D003381 ORTHO05D003880 7.9e-09 63.9 73 50.7
AUR62005946 Chenopodium quinoa HOM05D003381 ORTHO05D003880 1.0e-08 63.5 47 61.7
Lalb_Chr11g0067571 Lupinus albus HOM05D003381 ORTHO05D003880 1.0e-08 63.5 83 42.2
Glyma.04G225500 Glycine max HOM05D003381 ORTHO05D003880 1.3e-08 63.2 84 59.5
Nitab4.5_0002691g0080 Nicotiana tabacum HOM05D003381 ORTHO05D003880 1.3e-08 63.2 77 58.4
Peaxi162Scf00815g00116 Petunia axillaris HOM05D003381 ORTHO05D003880 1.3e-08 63.2 87 51.7
Migut.F00121 Erythranthe guttata HOM05D003381 ORTHO05D003880 1.8e-08 62.8 87 46.0
Solyc03g096780.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 1.8e-08 62.8 77 48.1
Sopen03g027500 Solanum pennellii HOM05D003381 ORTHO05D003880 1.8e-08 62.8 98 50.0
Sopen03g027520 Solanum pennellii HOM05D003381 ORTHO05D003880 1.8e-08 62.8 77 48.1
PGSC0003DMG400000545 Solanum tuberosum HOM05D003381 ORTHO05D003880 1.8e-08 62.8 77 57.1
Gohir.A08G106600 Gossypium hirsutum HOM05D003381 ORTHO05D003880 2.3e-08 62.4 83 55.4
Sabra15G0000300 Salix brachista HOM05D003381 ORTHO05D003880 2.3e-08 62.4 74 47.3
Solyc03g096760.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 3.0e-08 62.0 77 46.8
Sopen03g027490 Solanum pennellii HOM05D003381 ORTHO05D003880 3.0e-08 62.0 77 46.8
Actinidia34289 Actinidia chinensis HOM05D003381 ORTHO05D003880 3.9e-08 61.6 78 55.1
TAR374G1397 Trochodendron aralioides HOM05D003381 ORTHO05D003880 3.9e-08 61.6 76 46.1
Aqoxy5G04393 Aquilegia oxysepala HOM05D003381 ORTHO05D003880 5.1e-08 61.2 80 48.8
Lsat_1_v5_gn_8_4301 Lactuca sativa HOM05D003381 ORTHO05D003880 5.1e-08 61.2 46 60.9
Potri.015G000500 Populus trichocarpa HOM05D003381 ORTHO05D003880 5.1e-08 61.2 74 47.3
MSTRG.26951 Avicennia marina HOM05D003381 ORTHO05D003880 6.7e-08 60.8 88 45.5
Glyma.14G188300 Glycine max HOM05D003381 ORTHO05D003880 6.7e-08 60.8 78 46.2
Peaxi162Scf00685g10014 Petunia axillaris HOM05D003381 ORTHO05D003880 6.7e-08 60.8 46 60.9
PGR142G3642 Punica granatum HOM05D003381 ORTHO05D003880 6.7e-08 60.8 81 53.1
PGSC0003DMG400027025 Solanum tuberosum HOM05D003381 ORTHO05D003880 6.7e-08 60.8 77 46.8
VMungo1309G1451 Vigna mungo HOM05D003381 ORTHO05D003880 6.7e-08 60.8 84 57.1
Oeu063749.1 Olea europaea HOM05D003381 ORTHO05D003880 8.7e-08 60.5 77 57.1
TWI81G0192 Tripterygium wilfordii HOM05D003381 ORTHO05D003880 8.7e-08 60.5 80 47.5
Migut.F00967 Erythranthe guttata HOM05D003381 ORTHO05D003880 1.1e-07 60.1 107 41.1
Nitab4.5_0002691g0070 Nicotiana tabacum HOM05D003381 ORTHO05D003880 1.1e-07 60.1 77 54.5
CSS0005275 Camellia sinensis var. sinensis HOM05D003381 ORTHO05D003880 1.5e-07 59.7 73 46.6
CANSAT21G1431 Cannabis sativa HOM05D003381 ORTHO05D003880 1.5e-07 59.7 72 43.1
Solyc06g072990.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 1.5e-07 59.7 87 47.1
Potri.012G004500 Populus trichocarpa HOM05D003381 ORTHO05D003880 1.9e-07 59.3 83 43.4
PGSC0003DMG400000547 Solanum tuberosum HOM05D003381 ORTHO05D003880 1.9e-07 59.3 77 46.8
EL10Ac3g05129 Beta vulgaris HOM05D003381 ORTHO05D003880 2.5e-07 58.9 79 45.6
Cc02_g00580 Coffea canephora HOM05D003381 ORTHO05D003880 2.5e-07 58.9 81 43.2
Lsat_1_v5_gn_2_3421 Lactuca sativa HOM05D003381 ORTHO05D003880 2.5e-07 58.9 82 57.3
QL09p005975 Quercus lobata HOM05D003381 ORTHO05D003880 2.5e-07 58.9 97 51.5
ClCG01G000030 Citrullus lanatus HOM05D003381 ORTHO05D003880 3.3e-07 58.5 74 47.3
COL.COLO4_14402 Corchorus olitorius HOM05D003381 ORTHO05D003880 3.3e-07 58.5 45 60.0
Haze_00337 Corylus avellana HOM05D003381 ORTHO05D003880 3.3e-07 58.5 72 55.6
Gohir.D08G117900 Gossypium hirsutum HOM05D003381 ORTHO05D003880 3.3e-07 58.5 86 54.7
Nitab4.5_0000115g0190 Nicotiana tabacum HOM05D003381 ORTHO05D003880 4.3e-07 58.2 92 48.9
Oeu017357.1 Olea europaea HOM05D003381 ORTHO05D003880 4.3e-07 58.2 82 52.4
Prupe.2G322300 Prunus persica HOM05D003381 ORTHO05D003880 4.3e-07 58.2 83 47.0
ECA232G1694 Erigeron canadensis HOM05D003381 ORTHO05D003880 5.7e-07 57.8 46 56.5
Phvul.008G187900 Phaseolus vulgaris HOM05D003381 ORTHO05D003880 5.7e-07 57.8 81 43.2
Zm00001eb231110 Zea mays HOM05D003381 ORTHO05D003880 5.7e-07 57.8 83 42.2
Ah.13g071060 Amaranthus hybridus HOM05D003381 ORTHO05D003880 7.4e-07 57.4 76 40.8
CANSAT21G0934 Cannabis sativa HOM05D003381 ORTHO05D003880 7.4e-07 57.4 72 40.3
Ciclev10022951m.g Citrus clementina HOM05D003381 ORTHO05D003880 7.4e-07 57.4 79 44.3
RcHm_v2.0_Chr1g0383321 Rosa chinensis HOM05D003381 ORTHO05D003880 7.4e-07 57.4 79 43.0
SGA_v2.0_scaffold351G49675 Striga asiatica HOM05D003381 ORTHO05D003880 7.4e-07 57.4 88 43.2
CAN.G65.142 Capsicum annuum HOM05D003381 ORTHO05D003880 9.6e-07 57.0 44 59.1
Sabra12G0000400 Salix brachista HOM05D003381 ORTHO05D003880 9.6e-07 57.0 86 39.5
MD01G1231600 Malus domestica HOM05D003381 ORTHO05D003880 1.3e-06 56.6 80 47.5
Nitab4.5_0002867g0010 Nicotiana tabacum HOM05D003381 ORTHO05D003880 1.3e-06 56.6 77 57.1
Os02g0129800 Oryza sativa ssp. japonica HOM05D003381 ORTHO05D003880 1.3e-06 56.6 71 60.6
MD07G1303600 Malus domestica HOM05D003381 ORTHO05D003880 1.6e-06 56.2 82 48.8
Dinv29190 Davidia involucrata HOM05D003381 ORTHO05D003880 2.1e-06 55.8 72 43.1
Lsat_1_v5_gn_8_4241 Lactuca sativa HOM05D003381 ORTHO05D003880 2.1e-06 55.8 79 57.0
CDE09G1369 Ceratophyllum demersum HOM05D001765 ORTHO05D003527 2.8e-06 55.5 79 57.0
Gorai.004G126500 Gossypium raimondii HOM05D003381 ORTHO05D003880 2.8e-06 55.5 86 52.3
Manes.01G002300 Manihot esculenta HOM05D003381 ORTHO05D003880 2.8e-06 55.5 84 39.3
TAR375G0964 Trochodendron aralioides HOM05D003381 ORTHO05D003880 2.8e-06 55.5 75 45.3
Gohir.A08G106800 Gossypium hirsutum HOM05D003381 ORTHO05D003880 3.7e-06 55.1 86 52.3
CAN.G303.61 Capsicum annuum HOM05D003381 ORTHO05D003880 4.8e-06 54.7 77 44.2
DCAR_010556 Daucus carota HOM05D003381 ORTHO05D003880 4.8e-06 54.7 77 42.9
Oeu055427.1 Olea europaea HOM05D003381 ORTHO05D003880 4.8e-06 54.7 42 64.3
Gohir.D08G117850 Gossypium hirsutum HOM05D003381 ORTHO05D003880 6.2e-06 54.3 83 53.0
Gorai.004G126400 Gossypium raimondii HOM05D003381 ORTHO05D003880 6.2e-06 54.3 83 53.0
LjContig00155g0019595 Lotus japonicus HOM05D003381 ORTHO05D003880 6.2e-06 54.3 49 57.1
SalBow4G2332 Salvia bowleyana HOM05D003381 ORTHO05D003880 6.2e-06 54.3 86 43.0
PGSC0003DMG400000546 Solanum tuberosum HOM05D003381 ORTHO05D003880 6.2e-06 54.3 77 54.5
FAN03G2343 Fragaria x ananassa HOM05D003381 ORTHO05D003880 8.2e-06 53.9 94 37.2


User provided reference genes

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