Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG4G18040 Aethionema arabicum HOM05D004660 ORTHO05D005474 1.2e-129 466.5 229 100.0
THA.LOC104803315 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 1.8e-32 143.7 127 61.4
THA.LOC104814957 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 1.3e-30 137.5 127 59.1
Sp5g12560 Schrenkiella parvula HOM05D004660 ORTHO05D005474 1.7e-30 137.1 128 60.2
THA.LOC104799676 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 2.2e-30 136.7 146 52.7
BraA06t25770Z Brassica rapa HOM05D004660 ORTHO05D005474 2.9e-30 136.3 127 59.8
BcaB02g09594 Brassica carinata HOM05D004660 ORTHO05D005474 1.1e-29 134.4 127 59.1
Thhalv10005081m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 1.4e-29 134.0 129 58.1
Carub.0006s2247 Capsella rubella HOM05D004660 ORTHO05D005474 7.1e-29 131.7 129 58.1
Thhalv10010801m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 1.6e-28 130.6 128 57.8
AL5G29390 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 2.1e-28 130.2 127 57.5
Sp2g22770 Schrenkiella parvula HOM05D004660 ORTHO05D005474 2.1e-28 130.2 129 57.4
A06p28270 Brassica napus HOM05D004660 ORTHO05D005474 3.5e-28 129.4 127 58.3
Aa31LG11G3870 Aethionema arabicum HOM05D004660 ORTHO05D005474 2.3e-27 126.7 127 55.1
CARHR188840 Cardamine hirsuta HOM05D004660 ORTHO05D005474 6.6e-27 125.2 125 56.8
AL6G36220 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 1.1e-26 124.4 130 56.9
Cpa.g.sc3.184 Carica papaya HOM05D004660 ORTHO05D005474 2.5e-26 123.2 127 55.1
Cc02_g00620 Coffea canephora HOM05D004660 ORTHO05D005474 3.3e-26 122.9 96 65.6
DCAR_014568 Daucus carota HOM05D004660 ORTHO05D005474 4.3e-26 122.5 126 55.6
Glyma.06G138900 Glycine max HOM05D004660 ORTHO05D005474 9.5e-26 121.3 127 52.0
TAR629G0239 Trochodendron aralioides HOM05D004660 ORTHO05D005474 9.5e-26 121.3 123 52.8
Phvul.008G188100 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 1.6e-25 120.6 127 52.0
arahy.Tifrunner.gnm1.ann1.6FR5WN Arachis hypogaea HOM05D004660 ORTHO05D005474 2.1e-25 120.2 126 52.4
CANSAT21G0927 Cannabis sativa HOM05D004660 ORTHO05D005474 2.8e-25 119.8 130 53.8
Glyma.04G225900 Glycine max HOM05D004660 ORTHO05D005474 2.8e-25 119.8 127 52.0
AT5G24610 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 3.6e-25 119.4 129 57.4
VMungo0647G0407 Vigna mungo HOM05D004660 ORTHO05D005474 4.7e-25 119.0 128 50.8
arahy.Tifrunner.gnm1.ann1.N0NSHG Arachis hypogaea HOM05D004660 ORTHO05D005474 1.4e-24 117.5 127 52.0
Gorai.008G263000 Gossypium raimondii HOM05D004660 ORTHO05D005474 2.3e-24 116.7 164 45.1
Manes.05G195800 Manihot esculenta HOM05D004660 ORTHO05D005474 2.3e-24 116.7 115 53.0
GSVIVG01038677001 Vitis vinifera HOM05D004660 ORTHO05D005474 2.3e-24 116.7 130 50.0
Atru.chr12.2504 Acer truncatum HOM05D004660 ORTHO05D005474 3.1e-24 116.3 127 53.5
Atru.chr12.2527 Acer truncatum HOM05D004660 ORTHO05D005474 3.1e-24 116.3 127 53.5
FAN10G1296 Fragaria x ananassa HOM05D004660 ORTHO05D005474 3.1e-24 116.3 145 46.2
Gohir.A12G244500 Gossypium hirsutum HOM05D004660 ORTHO05D005474 3.1e-24 116.3 128 52.3
Haze_00331 Corylus avellana HOM05D004660 ORTHO05D005474 4.0e-24 115.9 126 51.6
AT3G49550 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 5.2e-24 115.5 130 56.9
Gohir.D12G245400 Gossypium hirsutum HOM05D004660 ORTHO05D005474 5.2e-24 115.5 164 44.5
BcaNung01246 Brassica carinata HOM05D004660 ORTHO05D005474 6.8e-24 115.2 130 50.8
Ciclev10022731m.g Citrus clementina HOM05D004660 ORTHO05D005474 6.8e-24 115.2 127 51.2
FAN10G4080 Fragaria x ananassa HOM05D004660 ORTHO05D005474 6.8e-24 115.2 134 47.8
Nitab4.5_0000021g0160 Nicotiana tabacum HOM05D004660 ORTHO05D005474 6.8e-24 115.2 127 54.3
Nitab4.5_0007121g0060 Nicotiana tabacum HOM05D004660 ORTHO05D005474 6.8e-24 115.2 127 54.3
Peaxi162Scf01026g00258 Petunia axillaris HOM05D004660 ORTHO05D005474 6.8e-24 115.2 127 54.3
Solyc03g079970.1 Solanum lycopersicum HOM05D004660 ORTHO05D005474 8.9e-24 114.8 127 53.5
Sopen03g021700 Solanum pennellii HOM05D004660 ORTHO05D005474 8.9e-24 114.8 127 53.5
PGSC0003DMG400000574 Solanum tuberosum HOM05D004660 ORTHO05D005474 8.9e-24 114.8 127 53.5
Manes.01G050300 Manihot esculenta HOM05D004660 ORTHO05D005474 1.2e-23 114.4 115 50.4
Sed0002848 Sechium edule HOM05D004660 ORTHO05D005474 1.5e-23 114.0 127 51.2
FAN01G2536 Fragaria x ananassa HOM05D004660 ORTHO05D005474 2.0e-23 113.6 134 47.8
Lj1g0017846 Lotus japonicus HOM05D004660 ORTHO05D005474 2.6e-23 113.2 127 47.2
SGA_v2.0_scaffold44G16872 Striga asiatica HOM05D004660 ORTHO05D005474 3.4e-23 112.8 128 49.2
A06p35410 Brassica napus HOM05D004660 ORTHO05D005474 4.4e-23 112.5 130 51.5
BraA06t26464Z Brassica rapa HOM05D004660 ORTHO05D005474 4.4e-23 112.5 130 51.5
Duzib205G1429 Durio zibethinus HOM05D004660 ORTHO05D005474 4.4e-23 112.5 133 49.6
FvH4_7g33300 Fragaria vesca HOM05D004660 ORTHO05D005474 4.4e-23 112.5 134 46.3
Hma1.2p1_0115F.1_g055760 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 4.4e-23 112.5 127 51.2
Lj1P1031T30 Lonicera japonica HOM05D004660 ORTHO05D005474 4.4e-23 112.5 130 50.8
VMungo1309G2317 Vigna mungo HOM05D004660 ORTHO05D005474 4.4e-23 112.5 128 50.0
A02p40180 Brassica napus HOM05D004660 ORTHO05D005474 9.9e-23 111.3 130 53.1
CiPaw.06G038500 Carya illinoinensis HOM05D004660 ORTHO05D005474 9.9e-23 111.3 128 50.0
Gohir.D08G117700 Gossypium hirsutum HOM05D004660 ORTHO05D005474 9.9e-23 111.3 128 50.8
Gorai.004G126200 Gossypium raimondii HOM05D004660 ORTHO05D005474 9.9e-23 111.3 128 50.8
LjContig00312_ERROPOS870357g0003416 Lotus japonicus HOM05D004660 ORTHO05D005474 9.9e-23 111.3 116 52.6
Lalb_Chr10g0102981 Lupinus albus HOM05D004660 ORTHO05D005474 9.9e-23 111.3 127 51.2
vmacro10172 Vaccinium macrocarpon HOM05D004660 ORTHO05D005474 9.9e-23 111.3 126 50.0
Prupe.2G321900 Prunus persica HOM05D004660 ORTHO05D005474 1.3e-22 110.9 134 47.8
Thecc.03G211800 Theobroma cacao HOM05D004660 ORTHO05D005474 1.3e-22 110.9 128 50.0
A01p24630 Brassica napus HOM05D004660 ORTHO05D005474 1.7e-22 110.5 128 54.7
BraA01t02375Z Brassica rapa HOM05D004660 ORTHO05D005474 1.7e-22 110.5 128 54.7
FAN03G0846 Fragaria x ananassa HOM05D004660 ORTHO05D005474 1.7e-22 110.5 134 47.0
Sed0024142 Sechium edule HOM05D004660 ORTHO05D005474 1.7e-22 110.5 127 50.4
BcaNung02008 Brassica carinata HOM05D004660 ORTHO05D005474 2.2e-22 110.2 125 50.4
C07p43100 Brassica napus HOM05D004660 ORTHO05D005474 2.2e-22 110.2 125 50.4
BolC7t44836H Brassica oleracea HOM05D004660 ORTHO05D005474 2.2e-22 110.2 125 50.4
BraA02t08983Z Brassica rapa HOM05D004660 ORTHO05D005474 2.2e-22 110.2 130 52.3
CsaV3_4G009710 Cucumis sativus L. HOM05D004660 ORTHO05D005474 2.2e-22 110.2 127 50.4
DCAR_020388 Daucus carota HOM05D004660 ORTHO05D005474 2.2e-22 110.2 126 49.2
BcaC03g17953 Brassica carinata HOM05D004660 ORTHO05D005474 2.9e-22 109.8 130 52.3
C02p60130 Brassica napus HOM05D004660 ORTHO05D005474 2.9e-22 109.8 130 52.3
BolC2t12069H Brassica oleracea HOM05D004660 ORTHO05D005474 2.9e-22 109.8 130 52.3
CAN.G303.55 Capsicum annuum HOM05D004660 ORTHO05D005474 2.9e-22 109.8 127 52.8
TWI39G0024 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 2.9e-22 109.8 127 50.4
CSS0035101 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 3.7e-22 109.4 127 51.2
SGA_v2.0_scaffold18G08494 Striga asiatica HOM05D004660 ORTHO05D005474 3.7e-22 109.4 127 47.2
Aqoxy5G04391 Aquilegia oxysepala HOM05D004660 ORTHO05D005474 4.9e-22 109.0 132 47.7
BcaC09g49961 Brassica carinata HOM05D004660 ORTHO05D005474 4.9e-22 109.0 128 54.7
BolC1t03007H Brassica oleracea HOM05D004660 ORTHO05D005474 4.9e-22 109.0 128 54.7
ClCG07G009740 Citrullus lanatus HOM05D004660 ORTHO05D005474 4.9e-22 109.0 127 49.6
Gohir.A08G106300 Gossypium hirsutum HOM05D004660 ORTHO05D005474 4.9e-22 109.0 128 51.6
BcaB07g29917 Brassica carinata HOM05D004660 ORTHO05D005474 6.4e-22 108.6 130 51.5
C03p65490 Brassica napus HOM05D004660 ORTHO05D005474 6.4e-22 108.6 112 54.5
Migut.F00125 Erythranthe guttata HOM05D004660 ORTHO05D005474 6.4e-22 108.6 126 49.2
MD01G1231200 Malus domestica HOM05D004660 ORTHO05D005474 6.4e-22 108.6 134 46.3
Rhsim09G0211000 Rhododendron simsii HOM05D004660 ORTHO05D005474 6.4e-22 108.6 126 48.4
MELO3C024844.2 Cucumis melo HOM05D004660 ORTHO05D005474 8.3e-22 108.2 127 49.6
RcHm_v2.0_Chr1g0383281 Rosa chinensis HOM05D004660 ORTHO05D005474 8.3e-22 108.2 135 46.7
Carub.0005s1588 Capsella rubella HOM05D004660 ORTHO05D005474 1.1e-21 107.8 120 54.2
Glyma.02G221000 Glycine max HOM05D004660 ORTHO05D005474 1.1e-21 107.8 127 48.8
arahy.Tifrunner.gnm1.ann1.0Y4BRG Arachis hypogaea HOM05D004660 ORTHO05D005474 1.4e-21 107.5 118 51.7
Oeu055424.1 Olea europaea HOM05D004660 ORTHO05D005474 1.4e-21 107.5 127 49.6
TPR.G35910 Trifolium pratense HOM05D004660 ORTHO05D005474 1.4e-21 107.5 127 47.2
Ca_16837_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 1.9e-21 107.1 126 47.6
Phvul.009G040000 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 1.9e-21 107.1 128 48.4
Psat5g071200 Pisum sativum HOM05D004660 ORTHO05D005474 2.4e-21 106.7 128 49.2
CARHR158560 Cardamine hirsuta HOM05D004660 ORTHO05D005474 4.1e-21 105.9 100 55.0
Lj3P891T43 Lonicera japonica HOM05D004660 ORTHO05D005474 4.1e-21 105.9 126 47.6
LjContig00155g0012911 Lotus japonicus HOM05D004660 ORTHO05D005474 4.1e-21 105.9 127 48.8
SalBow4G0874 Salvia bowleyana HOM05D004660 ORTHO05D005474 4.1e-21 105.9 127 48.8
Glyma.14G188500 Glycine max HOM05D004660 ORTHO05D005474 5.4e-21 105.5 127 48.0
CSS0012455 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 7.1e-21 105.1 127 49.6
CiPaw.05G208600 Carya illinoinensis HOM05D004660 ORTHO05D005474 9.2e-21 104.8 127 48.0
Potri.015G000900 Populus trichocarpa HOM05D004660 ORTHO05D005474 9.2e-21 104.8 129 51.2
COL.COLO4_14397 Corchorus olitorius HOM05D004660 ORTHO05D005474 1.2e-20 104.4 115 52.2
Migut.F00969 Erythranthe guttata HOM05D004660 ORTHO05D005474 1.2e-20 104.4 127 46.5
TWI23G0412 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 2.7e-20 103.2 133 45.9
QL09p006015 Quercus lobata HOM05D004660 ORTHO05D005474 4.6e-20 102.4 128 48.4
Oeu061046.1 Olea europaea HOM05D004660 ORTHO05D005474 7.8e-20 101.7 126 46.8
Potri.012G004900 Populus trichocarpa HOM05D004660 ORTHO05D005474 7.8e-20 101.7 128 47.7
Sc19g0000390 Simmondsia chinensis HOM05D004660 ORTHO05D005474 7.8e-20 101.7 140 42.9
MSTRG.26954 Avicennia marina HOM05D004660 ORTHO05D005474 3.0e-19 99.8 115 45.2
AUR62005951 Chenopodium quinoa HOM05D004660 ORTHO05D005474 3.0e-19 99.8 126 43.7
unitig_92.g28236 Utricularia gibba HOM05D004660 ORTHO05D005474 3.0e-19 99.8 133 42.1
AUR62028114 Chenopodium quinoa HOM05D004660 ORTHO05D005474 3.9e-19 99.4 126 43.7
RcHm_v2.0_Chr4g0433201 Rosa chinensis HOM05D004660 ORTHO05D005474 3.9e-19 99.4 116 44.8
MBI12_g37476_MAGBIO Magnolia biondii HOM05D004660 ORTHO05D005474 1.1e-18 97.8 126 44.4
EL10Ac3g05134 Beta vulgaris HOM05D004660 ORTHO05D005474 1.9e-18 97.1 127 43.3
HanXRQChr01g0002691 Helianthus annuus HOM05D004660 ORTHO05D005474 2.5e-18 96.7 131 48.1
TPR.G27918 Trifolium pratense HOM05D004660 ORTHO05D005474 3.3e-18 96.3 128 46.9
Ah.13g069080 Amaranthus hybridus HOM05D004660 ORTHO05D005474 4.3e-18 95.9 126 42.9
Ah.13g071030 Amaranthus hybridus HOM05D004660 ORTHO05D005474 4.3e-18 95.9 127 43.3
Hma1.2p1_0415F.1_g148340 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 5.6e-18 95.5 128 43.8
Medtr5g068660 Medicago truncatula HOM05D004660 ORTHO05D005474 7.3e-18 95.1 128 46.9
Nn3g18745 Nelumbo nucifera HOM05D004660 ORTHO05D005474 7.3e-18 95.1 126 44.4
Psat2g060520 Pisum sativum HOM05D004660 ORTHO05D005474 2.1e-17 93.6 128 46.9
Psat7g096840 Pisum sativum HOM05D004660 ORTHO05D005474 2.1e-17 93.6 128 46.9
Lsat_1_v5_gn_6_117240 Lactuca sativa HOM05D004660 ORTHO05D005474 4.7e-17 92.4 133 45.9
unitig_37.g11998 Utricularia gibba HOM05D004660 ORTHO05D005474 6.2e-17 92.0 115 42.6
Ca_05550_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 1.4e-16 90.9 127 44.9
ATR0579G143 Amborella trichopoda HOM05D004660 ORTHO05D005474 7.6e-15 85.1 128 42.2
Os10g0509100 Oryza sativa ssp. japonica HOM05D004660 ORTHO05D005474 7.6e-15 85.1 126 40.5
Zm00001eb043850 Zea mays HOM05D004660 ORTHO05D005474 7.6e-15 85.1 145 37.2
Zm00001eb220600 Zea mays HOM05D004660 ORTHO05D005474 3.2e-13 79.7 126 38.1
CSS0045456 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 1.3e-11 74.3 99 44.4
BcaC01g02416 Brassica carinata HOM05D004660 ORTHO05D005474 3.9e-11 72.8 72 62.5
CSS0032658 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 8.7e-11 71.6 98 50.0
MD07G1303200 Malus domestica HOM05D004660 ORTHO05D005474 1.4e-08 64.3 79 45.6
DCAR_001793 Daucus carota HOM05D000001 ORTHO05D000003 6.9e-08 62.0 56 60.7
arahy.Tifrunner.gnm1.ann1.RHW5C7 Arachis hypogaea HOM05D017329 ORTHO05D005474 1.2e-07 61.2 37 70.3
Actinidia08719 Actinidia chinensis HOM05D004660 ORTHO05D005474 4.4e-07 59.3 47 70.2
SEGI_20417 Sequoiadendron giganteum HOM05D004660 ORTHO05D005474 1.7e-06 57.4 147 29.3
SalBow2G1279 Salvia bowleyana HOM05D004660 ORTHO05D005474 2.9e-06 56.6 72 47.2
Mapoly0204s0014 Marchantia polymorpha HOM05D004660 ORTHO05D005474 4.9e-06 55.8 145 31.7


User provided reference genes

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