Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG4G17960 Aethionema arabicum HOM05D003812 ORTHO05D004393 4.4e-303 1043.9 527 100.0
Thhalv10010256m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 1.3e-214 750.0 562 71.4
Sp5g12660 Schrenkiella parvula HOM05D003812 ORTHO05D004393 3.5e-212 741.9 574 69.5
AL5G29170 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 7.9e-212 740.7 581 69.2
AT3G49410 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 2.2e-209 732.6 575 68.9
CARHR158380 Cardamine hirsuta HOM05D003812 ORTHO05D004393 1.1e-205 720.3 578 66.8
C01p30850 Brassica napus HOM05D003812 ORTHO05D004393 3.7e-201 705.3 573 65.6
BolC1t03017H Brassica oleracea HOM05D003812 ORTHO05D004393 6.9e-200 701.0 585 64.3
BraA01t02385Z Brassica rapa HOM05D003812 ORTHO05D004393 8.5e-198 694.1 583 63.6
A01p24730 Brassica napus HOM05D003812 ORTHO05D004393 1.1e-197 693.7 583 63.5
BcaB05g23118 Brassica carinata HOM05D003812 ORTHO05D004393 3.8e-190 668.7 556 65.1
BcaC09g49951 Brassica carinata HOM05D003812 ORTHO05D004393 3.6e-188 662.1 555 64.5
CARHR188960 Cardamine hirsuta HOM05D003812 ORTHO05D004393 3.0e-187 659.1 573 61.3
Thhalv10003925m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 7.4e-186 654.4 573 61.3
AL6G36030 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 1.8e-184 649.8 570 62.8
AT5G24450 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 4.1e-184 648.7 573 60.0
Sp2g22880 Schrenkiella parvula HOM05D003812 ORTHO05D004393 7.7e-183 644.4 573 62.0
Carub.0006s2228 Capsella rubella HOM05D003812 ORTHO05D004393 1.1e-181 640.6 567 60.7
Aa31LG11G3700 Aethionema arabicum HOM05D003812 ORTHO05D004393 1.9e-181 639.8 559 62.3
THA.LOC104814949 Tarenaya hassleriana HOM05D003812 ORTHO05D004393 3.0e-179 632.5 580 58.1
BcaB07g29910 Brassica carinata HOM05D003812 ORTHO05D004393 1.9e-173 613.2 577 57.7
A02p40330 Brassica napus HOM05D003812 ORTHO05D004393 2.2e-169 599.7 577 59.8
BcaC03g17974 Brassica carinata HOM05D003812 ORTHO05D004393 9.1e-168 594.3 565 59.8
BolC2t12085H Brassica oleracea HOM05D003812 ORTHO05D004393 2.7e-167 592.8 579 58.4
BraA02t09001Z Brassica rapa HOM05D003812 ORTHO05D004393 2.7e-167 592.8 580 58.4
C02p60290 Brassica napus HOM05D003812 ORTHO05D004393 4.7e-164 582.0 576 58.3
BcaC03g17970 Brassica carinata HOM05D003812 ORTHO05D004393 3.3e-141 506.1 570 53.5
Cpa.g.sc151.5 Carica papaya HOM05D003812 ORTHO05D004393 4.7e-132 475.7 596 44.8
Thecc.03G204100 Theobroma cacao HOM05D003812 ORTHO05D004393 2.9e-121 439.9 598 43.8
Atru.chr3.1997_Atru.chr3.1998 Acer truncatum HOM05D003812 ORTHO05D004393 9.3e-120 434.9 601 42.6
Gorai.004G122600 Gossypium raimondii HOM05D003812 ORTHO05D004393 7.8e-119 431.8 603 42.6
Gohir.D08G113808 Gossypium hirsutum HOM05D003812 ORTHO05D004393 5.1e-118 429.1 605 42.5
QL10p064313 Quercus lobata HOM05D003812 ORTHO05D004393 1.5e-117 427.6 592 42.9
TWI63G1503 Tripterygium wilfordii HOM05D003812 ORTHO05D004393 2.5e-117 426.8 578 44.3
Gohir.A08G102525 Gossypium hirsutum HOM05D003812 ORTHO05D004393 4.3e-117 426.0 597 40.7
arahy.Tifrunner.gnm1.ann1.U9V8RX Arachis hypogaea HOM05D003812 ORTHO05D004393 6.9e-115 418.7 585 41.7
GSVIVG01038248001 Vitis vinifera HOM05D003812 ORTHO05D004393 9.0e-115 418.3 613 40.8
arahy.Tifrunner.gnm1.ann1.SFVM41 Arachis hypogaea HOM05D003812 ORTHO05D004393 1.5e-114 417.5 585 41.7
Ciclev10027241m.g Citrus clementina HOM05D003812 ORTHO05D004393 2.0e-114 417.2 593 43.0
Cfa008512 Carpinus fangiana HOM05D003812 ORTHO05D004393 2.6e-114 416.8 567 42.7
Lj2g0024194 Lotus japonicus HOM05D003812 ORTHO05D004393 2.6e-114 416.8 588 40.5
MD15G1143400 Malus domestica HOM05D003812 ORTHO05D004393 5.8e-114 415.6 607 40.4
Prupe.7G062100 Prunus persica HOM05D003812 ORTHO05D004393 3.8e-113 412.9 588 42.3
Manes.01G010200 Manihot esculenta HOM05D003812 ORTHO05D004393 1.1e-112 411.4 576 42.4
Actinidia18400 Actinidia chinensis HOM05D003812 ORTHO05D004393 2.4e-112 410.2 604 41.7
COL.COLO4_16818 Corchorus olitorius HOM05D003812 ORTHO05D004393 7.1e-112 408.7 676 39.1
Lj2g0003816 Lotus japonicus HOM05D003812 ORTHO05D004393 3.9e-110 402.9 605 39.3
CSS0041441 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 8.7e-110 401.7 614 41.2
BolC2t12088H Brassica oleracea HOM05D003812 ORTHO05D004393 1.1e-109 401.4 284 68.7
Glyma.11G082800 Glycine max HOM05D003812 ORTHO05D004393 1.5e-109 401.0 575 42.3
Potri.017G007200 Populus trichocarpa HOM05D003812 ORTHO05D004393 1.5e-109 401.0 583 39.6
Phvul.002G113100 Phaseolus vulgaris HOM05D003812 ORTHO05D004393 4.3e-109 399.4 565 41.8
VMungo1215G0546 Vigna mungo HOM05D003812 ORTHO05D004393 9.6e-109 398.3 600 39.5
FvH4_1g00230 Fragaria vesca HOM05D003812 ORTHO05D004393 1.3e-108 397.9 577 42.1
FvH4_4g37371 Fragaria vesca HOM05D003812 ORTHO05D004393 2.1e-108 397.1 581 40.3
TAR362G0390 Trochodendron aralioides HOM05D003812 ORTHO05D004393 1.8e-107 394.0 622 40.7
PGR142G2470 Punica granatum HOM05D003812 ORTHO05D004393 2.4e-107 393.7 596 42.1
CANSAT54G2113 Cannabis sativa HOM05D003812 ORTHO05D004393 1.2e-106 391.3 608 41.4
Ca_17095_v3 Cicer arietinum L. HOM05D003812 ORTHO05D004393 1.2e-106 391.3 588 40.8
Sed0027703 Sechium edule HOM05D003812 ORTHO05D004393 8.4e-105 385.2 553 41.6
MSTRG.26255 Avicennia marina HOM05D003812 ORTHO05D004393 2.7e-103 380.2 625 38.7
Psat3g143480 Pisum sativum HOM05D003812 ORTHO05D004393 1.8e-102 377.5 594 41.6
FAN26G2119 Fragaria x ananassa HOM05D003812 ORTHO05D004393 8.7e-102 375.2 569 40.8
CsaV3_5G037130 Cucumis sativus L. HOM05D003812 ORTHO05D004393 2.5e-101 373.6 564 40.6
DCAR_023841 Daucus carota HOM05D003812 ORTHO05D004393 4.3e-101 372.9 613 40.0
arahy.Tifrunner.gnm1.ann1.B1HR4A Arachis hypogaea HOM05D003812 ORTHO05D004393 9.6e-101 371.7 604 39.9
arahy.Tifrunner.gnm1.ann1.CNXN93 Arachis hypogaea HOM05D003812 ORTHO05D004393 9.6e-101 371.7 604 39.9
BcaB07g31049 Brassica carinata HOM05D003812 ORTHO05D004393 1.3e-100 371.3 417 50.1
ClCG09G014660 Citrullus lanatus HOM05D003812 ORTHO05D004393 1.3e-100 371.3 581 39.8
Lj4C178G3 Lonicera japonica HOM05D003812 ORTHO05D004393 1.6e-100 370.9 582 39.5
Carub.0005s1566 Capsella rubella HOM05D003812 ORTHO05D004393 3.7e-100 369.8 209 82.8
Sabra17G0008000 Salix brachista HOM05D003812 ORTHO05D004393 1.1e-99 368.2 638 36.2
Lsat_1_v5_gn_8_131861 Lactuca sativa HOM05D003812 ORTHO05D004393 1.4e-99 367.9 578 38.9
FAN17G2490 Fragaria x ananassa HOM05D004444 ORTHO05D005246 5.8e-98 362.5 454 44.7
BcaB01g00718 Brassica carinata HOM05D003812 ORTHO05D004393 7.6e-98 362.1 291 63.6
FAN07G2723 Fragaria x ananassa HOM05D003812 ORTHO05D004393 4.9e-97 359.4 439 44.6
FAN07G0162 Fragaria x ananassa HOM05D004444 ORTHO05D005246 6.5e-97 359.0 466 43.6
MELO3C026683.2 Cucumis melo HOM05D003812 ORTHO05D004393 1.4e-96 357.8 570 38.9
Sc25g0002340 Simmondsia chinensis HOM05D003812 ORTHO05D004393 1.4e-96 357.8 483 42.4
Medtr7g059160 Medicago truncatula HOM05D003812 ORTHO05D004393 1.9e-96 357.5 623 38.4
TPR.G11261 Trifolium pratense HOM05D003812 ORTHO05D004393 7.1e-96 355.5 604 37.7
SalBow5G1511 Salvia bowleyana HOM05D003812 ORTHO05D004393 8.7e-94 348.6 614 38.1
Sopen12g006540 Solanum pennellii HOM05D003812 ORTHO05D004393 1.5e-93 347.8 632 37.0
SalBow5G1547 Salvia bowleyana HOM05D003812 ORTHO05D004393 1.9e-93 347.4 617 36.8
TPR.G23263 Trifolium pratense HOM05D003812 ORTHO05D004393 1.3e-92 344.7 608 37.2
Aqoxy7G02949 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 1.6e-92 344.4 624 37.5
Solyc12g011180.3 Solanum lycopersicum HOM05D003812 ORTHO05D004393 1.1e-91 341.7 454 42.3
Potri.007G145000 Populus trichocarpa HOM05D003812 ORTHO05D004393 1.8e-91 340.9 479 38.8
EL10Ac3g06164 Beta vulgaris HOM05D003812 ORTHO05D004393 1.5e-90 337.8 533 42.2
Migut.K00296 Erythranthe guttata HOM05D003812 ORTHO05D004393 5.9e-90 335.9 630 38.4
Aqoxy4G02750 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 7.7e-90 335.5 660 37.6
PSO170G6215 Papaver somniferum HOM05D003812 ORTHO05D004393 1.7e-89 334.3 602 38.9
CAN.G164.18 Capsicum annuum HOM05D003812 ORTHO05D004393 2.2e-89 334.0 612 36.1
Rhsim09G0003800 Rhododendron simsii HOM05D003812 ORTHO05D004393 1.4e-88 331.3 649 33.0
Nitab4.5_0010162g0010 Nicotiana tabacum HOM05D003812 ORTHO05D004393 1.9e-88 330.9 473 39.7
ECA246G4500 Erigeron canadensis HOM05D003812 ORTHO05D004393 9.4e-88 328.6 570 35.3
HanXRQChr05g0135721 Helianthus annuus HOM05D003812 ORTHO05D004393 2.1e-87 327.4 540 38.3
Nitab4.5_0003520g0020 Nicotiana tabacum HOM05D003812 ORTHO05D004393 8.8e-86 322.0 444 42.1
AUR62023711 Chenopodium quinoa HOM05D003812 ORTHO05D004393 1.5e-85 321.2 413 44.3
SGA_v2.0_scaffold12G06029 Striga asiatica HOM05D003812 ORTHO05D004393 4.8e-84 316.2 661 34.9
Peaxi162Scf00463g00428 Petunia axillaris HOM05D003812 ORTHO05D004393 1.5e-82 311.2 475 38.9
Nn1g08169 Nelumbo nucifera HOM05D003812 ORTHO05D004393 2.7e-79 300.4 354 43.5
Cc00_g24630 Coffea canephora HOM05D003812 ORTHO05D004393 5.7e-77 292.7 349 45.0
Nitab4.5_0000160g0140 Nicotiana tabacum HOM05D003812 ORTHO05D004393 1.3e-76 291.6 341 45.7
Carub.0005s1565 Capsella rubella HOM05D003812 ORTHO05D004393 1.1e-75 288.5 300 58.7
HPP92_018576 Vanilla planifolia HOM05D003812 ORTHO05D004393 1.2e-74 285.0 574 37.5
Zm00001eb420200 Zea mays HOM05D003812 ORTHO05D004393 1.0e-73 282.0 567 33.9
unitig_37.g12590 Utricularia gibba HOM05D003812 ORTHO05D004393 2.5e-72 277.3 569 34.6
CiPaw.01G201400 Carya illinoinensis HOM05D003812 ORTHO05D004393 8.8e-70 268.9 439 39.2
SMO367G0920 Selaginella moellendorffii HOM05D003812 ORTHO05D004393 4.2e-64 250.0 418 36.8
MBI16_g29049_MAGBIO Magnolia biondii HOM05D003812 ORTHO05D004393 2.1e-63 247.7 439 39.4
Mapoly0019s0182 Marchantia polymorpha HOM05D003812 ORTHO05D004393 3.6e-63 246.9 417 34.1
vmacro06691 Vaccinium macrocarpon HOM05D003812 ORTHO05D004393 4.8e-60 236.5 412 34.2
CDE05G0093 Ceratophyllum demersum HOM05D003812 ORTHO05D004393 7.0e-59 232.6 643 32.7
AagrBONN_evm.TU.Sc2ySwM_344.3654 Anthoceros agrestis HOM05D003812 ORTHO05D004393 3.8e-57 226.9 457 31.5
Hma1.2p1_0381F.1_g140050 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 8.5e-57 225.7 238 49.2
Pp3c16_3240 Physcomitrium patens HOM05D003812 ORTHO05D004393 8.5e-57 225.7 472 32.2
Lalb_Chr05g0212041 Lupinus albus HOM05D003812 ORTHO05D004393 1.4e-54 218.4 220 50.0
Sc13g0007550 Simmondsia chinensis HOM05D003812 ORTHO05D004393 3.1e-51 207.2 243 43.6
TAR636G0947 Trochodendron aralioides HOM05D003812 ORTHO05D004393 7.7e-50 202.6 268 43.7
Haze_11132 Corylus avellana HOM05D003812 ORTHO05D004393 5.0e-49 199.9 320 39.1
RcHm_v2.0_Chr2g0084531 Rosa chinensis HOM05D003812 ORTHO05D004393 6.6e-49 199.5 210 49.5
Hund12300 Selenicereus undatus HOM05D003812 ORTHO05D004393 1.5e-48 198.4 236 44.5
RcHm_v2.0_Chr2g0084521 Rosa chinensis HOM05D003812 ORTHO05D004393 1.6e-47 194.9 354 37.0
FAN23G1808 Fragaria x ananassa HOM05D003812 ORTHO05D004393 2.8e-47 194.1 371 36.9
AUR62002481 Chenopodium quinoa HOM05D003812 ORTHO05D004393 4.0e-46 190.3 314 37.3
Cc06_g19250 Coffea canephora HOM05D003812 ORTHO05D004393 1.2e-42 178.7 205 45.9
Lalb_Chr05g0212031 Lupinus albus HOM05D003812 ORTHO05D004393 2.5e-40 171.0 330 34.2
Nitab4.5_0001168g0120 Nicotiana tabacum HOM05D003812 ORTHO05D004393 1.0e-38 165.6 288 35.8
Ah.13g073180 Amaranthus hybridus HOM05D003812 ORTHO05D004393 7.5e-37 159.5 271 36.9
ATR0580G406 Amborella trichopoda HOM05D003812 ORTHO05D004393 7.5e-37 159.5 215 41.4
Oeu022463.3 Olea europaea HOM05D003812 ORTHO05D004393 2.2e-36 157.9 395 33.9
Ah.13g073190 Amaranthus hybridus HOM05D003812 ORTHO05D004393 4.9e-36 156.8 149 51.0
VMungo0251G1870 Vigna mungo HOM05D000140 ORTHO05D004393 4.0e-30 137.1 180 42.8
CSS0023461 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 6.8e-30 136.3 181 39.8
CSS0030669 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 1.2e-29 135.6 163 41.1
Hma1.2p1_0381F.1_g140060 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 1.2e-29 135.6 90 64.4
CSS0048962 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 2.6e-29 134.4 181 39.8
Oeu064436.1 Olea europaea HOM05D003812 ORTHO05D004393 1.3e-28 132.1 177 40.1
CSS0001518 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 4.9e-28 130.2 181 38.7
CSS0002491 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 3.2e-27 127.5 181 38.7
CSS0006626 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 3.2e-27 127.5 181 38.7
CSS0008525 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 3.2e-27 127.5 181 38.7
SHI01261 Sapria himalayana HOM05D003812 ORTHO05D004393 1.2e-26 125.6 125 48.8
VMungo1268G0001 Vigna mungo HOM05D003812 ORTHO05D004393 1.1e-24 119.0 204 36.8
Haze_11133 Corylus avellana HOM05D003812 ORTHO05D004393 1.2e-23 115.5 110 52.7
Os01g0528000 Oryza sativa ssp. japonica HOM05D003812 ORTHO05D004393 5.2e-22 110.2 128 45.3
BcaB07g31053 Brassica carinata HOM05D003812 ORTHO05D004393 3.2e-19 100.9 68 67.6
Cc06_g19240 Coffea canephora HOM05D003812 ORTHO05D004393 4.1e-19 100.5 120 45.0
TAR636G0254 Trochodendron aralioides HOM05D003812 ORTHO05D004393 3.5e-18 97.4 196 38.8
arahy.Tifrunner.gnm1.ann1.05VQ85 Arachis hypogaea HOM05D003812 ORTHO05D004393 6.0e-18 96.7 107 43.9
SEGI_23375 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 5.1e-17 93.6 184 34.2
CSS0036967 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 2.1e-15 88.2 82 46.3
Nn1g08161 Nelumbo nucifera HOM05D003812 ORTHO05D004393 1.8e-14 85.1 182 42.9
CBR_g26464 Chara braunii HOM05D003812 ORTHO05D004393 5.2e-14 83.6 455 19.8
FAN20G1426 Fragaria x ananassa HOM05D003812 ORTHO05D004393 6.4e-12 76.6 97 48.5
FvH4_2g23680 Fragaria vesca HOM05D003812 ORTHO05D004393 4.6e-10 70.5 102 45.1
vmacro06690 Vaccinium macrocarpon HOM05D003812 ORTHO05D004393 6.0e-10 70.1 43 69.8
HanXRQChr17g0553321 Helianthus annuus HOM05D003812 ORTHO05D004393 5.6e-08 63.5 165 35.8
Hund12275 Selenicereus undatus HOM05D003812 ORTHO05D004393 5.6e-08 63.5 183 36.6
Hma1.2p1_0381F.1_g140070 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 1.3e-07 62.4 169 32.5
SEGI_03594 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 1.6e-07 62.0 44 61.4
MBI16_g46635_MAGBIO Magnolia biondii HOM05D000963 ORTHO05D005131 2.1e-07 61.6 225 34.7
Sc13g0007560 Simmondsia chinensis HOM05D003812 ORTHO05D004393 2.1e-07 61.6 62 51.6
Sc25g0002350 Simmondsia chinensis HOM05D003812 ORTHO05D004393 1.8e-06 58.5 47 59.6
arahy.Tifrunner.gnm1.ann1.NBB910 Arachis hypogaea HOM05D003812 ORTHO05D004393 2.4e-06 58.2 84 35.7
Hund12301 Selenicereus undatus HOM05D003812 ORTHO05D004393 2.4e-06 58.2 194 32.5
Cc00_g35850 Coffea canephora HOM05D003812 ORTHO05D004393 6.9e-06 56.6 76 39.5


User provided reference genes

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