Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG4G16620 Aethionema arabicum HOM05D005796 ORTHO05D007054 7.5e-104 380.6 196 100.0
Carub.0005s1409 Capsella rubella HOM05D005796 ORTHO05D007054 3.2e-70 268.9 204 71.1
Sp5g14000 Schrenkiella parvula HOM05D005796 ORTHO05D007054 3.2e-70 268.9 208 71.6
Thhalv10010656m.g Eutrema salsugineum HOM05D005796 ORTHO05D007054 4.1e-70 268.5 207 72.5
AT3G47980 Arabidopsis thaliana HOM05D005796 ORTHO05D007054 5.4e-70 268.1 207 72.5
CARHR156700 Cardamine hirsuta HOM05D005796 ORTHO05D007054 2.7e-69 265.8 204 71.6
BcaC09g49836 Brassica carinata HOM05D005796 ORTHO05D007054 1.0e-68 263.8 212 71.2
BcaNung07157 Brassica carinata HOM05D005796 ORTHO05D007054 1.7e-68 263.1 203 74.9
BcaB05g22893 Brassica carinata HOM05D005796 ORTHO05D007054 1.5e-67 260.0 209 71.8
C01p32410 Brassica napus HOM05D005796 ORTHO05D007054 3.3e-67 258.8 209 70.8
AL5G27300 Arabidopsis lyrata HOM05D005796 ORTHO05D007054 4.3e-67 258.5 207 69.6
BolC1t03180H Brassica oleracea HOM05D005796 ORTHO05D007054 4.3e-67 258.5 209 71.8
BcaB01g00857 Brassica carinata HOM05D005796 ORTHO05D007054 1.2e-66 256.9 212 69.3
A01p25720 Brassica napus HOM05D005796 ORTHO05D007054 4.7e-66 255.0 209 70.3
BraA01t02488Z Brassica rapa HOM05D005796 ORTHO05D007054 6.2e-66 254.6 209 70.3
A06p19660 Brassica napus HOM05D005796 ORTHO05D007054 1.5e-64 250.0 209 68.9
BraA06t25046Z Brassica rapa HOM05D005796 ORTHO05D007054 1.5e-64 250.0 209 68.9
Aa31LG11G960 Aethionema arabicum HOM05D005796 ORTHO05D007054 5.2e-57 224.9 205 61.0
AL8G39690 Arabidopsis lyrata HOM05D005796 ORTHO05D007054 2.9e-55 219.2 204 63.7
BcaB02g09686 Brassica carinata HOM05D005796 ORTHO05D007054 3.8e-55 218.8 213 61.5
Carub.0008s2345 Capsella rubella HOM05D005796 ORTHO05D007054 3.8e-55 218.8 203 63.1
CARHR276510 Cardamine hirsuta HOM05D005796 ORTHO05D007054 8.4e-55 217.6 199 61.3
AT5G62720 Arabidopsis thaliana HOM05D005796 ORTHO05D007054 1.6e-53 213.4 204 61.3
BcaB02g09676 Brassica carinata HOM05D005796 ORTHO05D007054 7.8e-53 211.1 213 59.6
Thhalv10004798m.g Eutrema salsugineum HOM05D005796 ORTHO05D007054 2.3e-52 209.5 214 60.3
BcaC04g23395 Brassica carinata HOM05D005796 ORTHO05D007054 3.0e-52 209.1 206 63.1
C03p64010 Brassica napus HOM05D000012 ORTHO05D002455 3.9e-52 208.8 212 59.9
BcaC01g02511 Brassica carinata HOM05D005796 ORTHO05D007054 5.1e-52 208.4 212 59.9
A06p29510 Brassica napus HOM05D000012 ORTHO05D002455 5.1e-52 208.4 212 59.4
BolC3t18656H Brassica oleracea HOM05D005796 ORTHO05D007054 5.1e-52 208.4 212 59.9
BraA06t25896Z Brassica rapa HOM05D005796 ORTHO05D007054 5.1e-52 208.4 212 59.4
BcaNung01383 Brassica carinata HOM05D005796 ORTHO05D007054 8.7e-52 207.6 213 60.6
THA.LOC104821456 Tarenaya hassleriana HOM05D005796 ORTHO05D007054 1.1e-51 207.2 201 56.7
BolC9t53794H Brassica oleracea HOM05D005796 ORTHO05D007054 1.5e-51 206.8 207 62.8
A09p07830 Brassica napus HOM05D005796 ORTHO05D007054 4.3e-51 205.3 176 68.8
BraA09t36434Z Brassica rapa HOM05D005796 ORTHO05D007054 4.3e-51 205.3 176 68.8
C09p08810 Brassica napus HOM05D005796 ORTHO05D007054 5.6e-51 204.9 206 62.6
Sp2g25890 Schrenkiella parvula HOM05D005796 ORTHO05D007054 2.8e-50 202.6 209 58.4
Gohir.A07G065400 Gossypium hirsutum HOM05D005796 ORTHO05D007054 6.2e-50 201.4 175 59.4
Gorai.001G073800 Gossypium raimondii HOM05D005796 ORTHO05D007054 1.4e-49 200.3 197 55.8
Duzib084G0674 Durio zibethinus HOM05D005796 ORTHO05D007054 2.4e-49 199.5 160 62.5
Thecc.03G078500 Theobroma cacao HOM05D005796 ORTHO05D007054 2.4e-49 199.5 152 65.8
COL.COLO4_37386 Corchorus olitorius HOM05D005796 ORTHO05D007054 6.9e-49 198.0 119 78.2
FAN08G2559 Fragaria x ananassa HOM05D005796 ORTHO05D007054 1.5e-48 196.8 172 57.0
Eucgr.B00422 Eucalyptus grandis HOM05D005796 ORTHO05D007054 3.4e-48 195.7 118 78.0
Manes.14G074300 Manihot esculenta HOM05D005796 ORTHO05D007054 7.6e-48 194.5 117 76.9
FAN13G2643 Fragaria x ananassa HOM05D005796 ORTHO05D007054 1.7e-47 193.4 172 55.8
Cc04_g15610 Coffea canephora HOM05D005796 ORTHO05D007054 2.2e-47 193.0 133 66.9
Prupe.5G185800 Prunus persica HOM05D005796 ORTHO05D007054 2.2e-47 193.0 156 61.5
SalBow7G0869 Salvia bowleyana HOM05D005796 ORTHO05D007054 2.2e-47 193.0 162 59.3
RcHm_v2.0_Chr7g0180561 Rosa chinensis HOM05D005796 ORTHO05D007054 2.9e-47 192.6 117 75.2
Actinidia04922 Actinidia chinensis HOM05D005796 ORTHO05D007054 4.9e-47 191.8 142 63.4
PSO017G2472 Papaver somniferum HOM05D005796 ORTHO05D007054 6.4e-47 191.4 161 61.5
Dinv38663 Davidia involucrata HOM05D005796 ORTHO05D007054 8.4e-47 191.0 149 65.1
FAN04G0326 Fragaria x ananassa HOM05D005796 ORTHO05D007054 8.4e-47 191.0 147 61.9
TWI60G1143 Tripterygium wilfordii HOM05D005796 ORTHO05D007054 1.1e-46 190.7 155 61.3
CiPaw.11G037800 Carya illinoinensis HOM05D005796 ORTHO05D007054 1.4e-46 190.3 191 52.9
CANSAT80G0862 Cannabis sativa HOM05D005796 ORTHO05D007054 1.9e-46 189.9 154 58.4
PSO478G3339 Papaver somniferum HOM05D005796 ORTHO05D007054 1.9e-46 189.9 161 60.9
Ciclev10021819m.g Citrus clementina HOM05D005796 ORTHO05D007054 2.4e-46 189.5 154 61.0
FAN18G3372 Fragaria x ananassa HOM05D005796 ORTHO05D007054 2.4e-46 189.5 176 55.7
GSVIVG01008066001 Vitis vinifera HOM05D005796 ORTHO05D007054 4.2e-46 188.7 117 74.4
AUR62008352 Chenopodium quinoa HOM05D005796 ORTHO05D007054 5.4e-46 188.3 138 63.8
Lalb_Chr13g0303431 Lupinus albus HOM05D005796 ORTHO05D007054 7.1e-46 188.0 177 56.5
Migut.D01857 Erythranthe guttata HOM05D005796 ORTHO05D007054 9.3e-46 187.6 128 68.8
MD06G1187500 Malus domestica HOM05D005796 ORTHO05D007054 9.3e-46 187.6 170 55.9
arahy.Tifrunner.gnm1.ann1.U2VSD4 Arachis hypogaea HOM05D005796 ORTHO05D007054 1.2e-45 187.2 155 63.2
arahy.Tifrunner.gnm1.ann1.NXA9BP Arachis hypogaea HOM05D005796 ORTHO05D007054 2.1e-45 186.4 155 62.6
Oeu048731.1 Olea europaea HOM05D005796 ORTHO05D007054 2.1e-45 186.4 131 67.2
Sc12g0006170 Simmondsia chinensis HOM05D005796 ORTHO05D007054 2.7e-45 186.0 188 53.7
SGA_v2.0_scaffold7G04086 Striga asiatica HOM05D005796 ORTHO05D007054 4.6e-45 185.3 183 55.2
Cpa.g.sc414.2 Carica papaya HOM05D005796 ORTHO05D007054 6.0e-45 184.9 153 62.7
DCAR_026077 Daucus carota HOM05D005796 ORTHO05D007054 6.0e-45 184.9 160 56.9
TAR481G0014 Trochodendron aralioides HOM05D005796 ORTHO05D007054 7.8e-45 184.5 173 55.5
Atru.chr9.2321 Acer truncatum HOM05D005796 ORTHO05D007054 1.0e-44 184.1 148 62.2
EL10Ac5g10940 Beta vulgaris HOM05D005796 ORTHO05D007054 1.3e-44 183.7 143 62.2
MD14G1193900 Malus domestica HOM05D005796 ORTHO05D007054 1.3e-44 183.7 170 55.3
Haze_07383 Corylus avellana HOM05D005796 ORTHO05D007054 1.7e-44 183.3 184 53.3
HanXRQChr02g0045201 Helianthus annuus HOM05D005796 ORTHO05D007054 1.7e-44 183.3 117 71.8
Peaxi162Scf00009g00426 Petunia axillaris HOM05D005796 ORTHO05D007054 1.7e-44 183.3 155 58.7
MSTRG.4407 Avicennia marina HOM05D005796 ORTHO05D007054 3.0e-44 182.6 145 63.4
ECA247G3495 Erigeron canadensis HOM05D005796 ORTHO05D007054 5.1e-44 181.8 175 53.7
Nitab4.5_0004605g0110 Nicotiana tabacum HOM05D005796 ORTHO05D007054 5.1e-44 181.8 145 60.7
PGR083G2169 Punica granatum HOM05D005796 ORTHO05D007054 5.1e-44 181.8 137 63.5
Solyc03g113280.3 Solanum lycopersicum HOM05D005796 ORTHO05D007054 5.1e-44 181.8 141 62.4
Hma1.2p1_0002F.1_g003270 Hydrangea macrophylla HOM05D005796 ORTHO05D007054 6.6e-44 181.4 142 61.3
PGR083G0992 Punica granatum HOM05D005796 ORTHO05D007054 6.6e-44 181.4 137 63.5
Potri.015G065500 Populus trichocarpa HOM05D005796 ORTHO05D007054 1.1e-43 180.6 183 54.1
Nitab4.5_0005402g0010 Nicotiana tabacum HOM05D005796 ORTHO05D007054 1.5e-43 180.3 155 59.4
MELO3C002210.2 Cucumis melo HOM05D005796 ORTHO05D007054 2.5e-43 179.5 142 60.6
ClCG01G014370 Citrullus lanatus HOM05D005796 ORTHO05D007054 3.3e-43 179.1 142 60.6
Sopen03g032340 Solanum pennellii HOM05D005796 ORTHO05D007054 3.3e-43 179.1 117 71.8
Phvul.003G193000 Phaseolus vulgaris HOM05D005796 ORTHO05D007054 4.3e-43 178.7 143 60.1
Sabra15G0090700 Salix brachista HOM05D005796 ORTHO05D007054 4.3e-43 178.7 167 59.9
CsaV3_1G007940 Cucumis sativus L. HOM05D005796 ORTHO05D007054 5.6e-43 178.3 116 69.8
Glyma.17G096600 Glycine max HOM05D005796 ORTHO05D007054 7.3e-43 177.9 128 66.4
Hund02671 Selenicereus undatus HOM05D005796 ORTHO05D007054 7.3e-43 177.9 147 60.5
Lj9A459G48 Lonicera japonica HOM05D005796 ORTHO05D007054 9.6e-43 177.6 127 66.9
Gohir.D07G069900 Gossypium hirsutum HOM05D005796 ORTHO05D007054 1.3e-42 177.2 197 52.3
ATR0665G316 Amborella trichopoda HOM05D005796 ORTHO05D007054 2.8e-42 176.0 131 62.6
VMungo1215G0702 Vigna mungo HOM05D005796 ORTHO05D007054 4.8e-42 175.3 128 64.1
Lsat_1_v5_gn_1_10700 Lactuca sativa HOM05D005796 ORTHO05D007054 6.2e-42 174.9 135 61.5
PGSC0003DMG400025332 Solanum tuberosum HOM05D005796 ORTHO05D007054 1.1e-41 174.1 156 56.4
vmacro19431 Vaccinium macrocarpon HOM05D005796 ORTHO05D007054 4.0e-41 172.2 181 49.7
unitig_0.g783 Utricularia gibba HOM05D005796 ORTHO05D007054 5.3e-41 171.8 118 64.4
Sed0020047 Sechium edule HOM05D005796 ORTHO05D007054 6.9e-41 171.4 149 59.1
TPR.G38380 Trifolium pratense HOM05D005796 ORTHO05D007054 1.2e-40 170.6 127 63.8
unitig_899.g15402 Utricularia gibba HOM05D003955 ORTHO05D004684 1.3e-39 167.2 117 64.1
Medtr4g107630 Medicago truncatula HOM05D005796 ORTHO05D007054 1.7e-39 166.8 158 57.6
MBI03_g20464_MAGBIO Magnolia biondii HOM05D005796 ORTHO05D007054 2.2e-39 166.4 116 69.8
Ca_21851_v3 Cicer arietinum L. HOM05D005796 ORTHO05D007054 2.9e-39 166.0 127 61.4
Lj4g0017253 Lotus japonicus HOM05D005796 ORTHO05D007054 8.4e-39 164.5 179 46.9
Aqoxy3G00785 Aquilegia oxysepala HOM05D005796 ORTHO05D007054 1.1e-38 164.1 161 53.4
CDE02G2117 Ceratophyllum demersum HOM05D005796 ORTHO05D007054 3.2e-38 162.5 145 60.7
Os03g0684700 Oryza sativa ssp. japonica HOM05D005796 ORTHO05D007054 9.3e-38 161.0 104 71.2
Zm00001eb053360 Zea mays HOM05D005796 ORTHO05D007054 6.7e-36 154.8 105 67.6
SEGI_40570 Sequoiadendron giganteum HOM05D005796 ORTHO05D007054 8.7e-36 154.5 154 49.4
AUR62021745 Chenopodium quinoa HOM05D005796 ORTHO05D007054 1.1e-33 147.5 94 73.4
Zm00001eb217240 Zea mays HOM05D005796 ORTHO05D007054 1.2e-32 144.1 161 50.9
SMO356G0151 Selaginella moellendorffii HOM05D005796 ORTHO05D007054 3.2e-30 136.0 109 58.7
Mapoly0029s0058 Marchantia polymorpha HOM05D005796 ORTHO05D007054 4.8e-26 122.1 109 48.6
Sabra12G0050500 Salix brachista HOM05D005796 ORTHO05D007054 2.4e-25 119.8 187 44.9
FvH4_5g15530 Fragaria vesca HOM05D005796 ORTHO05D007054 4.9e-23 112.1 127 47.2
AagrBONN_evm.TU.Sc2ySwM_228.2536 Anthoceros agrestis HOM05D005796 ORTHO05D007054 1.1e-22 110.9 105 49.5
QL10p015507 Quercus lobata HOM05D005796 ORTHO05D007054 6.0e-21 105.1 68 67.6
Sed0018874 Sechium edule HOM05D005796 ORTHO05D007054 1.8e-20 103.6 106 51.9
Nn4g23032 Nelumbo nucifera HOM05D005796 ORTHO05D007054 9.0e-17 91.3 99 47.5
Glyma.05G030200 Glycine max HOM05D005796 ORTHO05D007054 5.5e-14 82.0 49 75.5
QL10p015509 Quercus lobata HOM05D005796 ORTHO05D007054 1.2e-13 80.9 46 84.8
BcaC01g01754 Brassica carinata HOM05D005796 ORTHO05D007054 6.1e-13 78.6 115 48.7
C03p72260 Brassica napus HOM05D005796 ORTHO05D007054 6.1e-13 78.6 115 48.7
BolC3t19521H Brassica oleracea HOM05D005796 ORTHO05D007054 6.1e-13 78.6 115 48.7
CAN.G4519.1 Capsicum annuum HOM05D005796 ORTHO05D007054 2.5e-11 73.2 46 73.9
Rhsim08G0160200 Rhododendron simsii HOM05D005796 ORTHO05D007054 8.2e-10 68.2 48 60.4


User provided reference genes

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