Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG4G1640 Aethionema arabicum HOM05D005454 ORTHO05D006781 1.1e-66 256.5 127 100.0
Thhalv10019255m.g Eutrema salsugineum HOM05D005454 ORTHO05D006781 1.5e-60 236.1 126 89.7
AT1G79390 Arabidopsis thaliana HOM05D005454 ORTHO05D006781 1.9e-60 235.7 127 90.6
BcaB02g07212 Brassica carinata HOM05D005454 ORTHO05D006781 1.9e-60 235.7 127 89.8
BraA07t31955Z Brassica rapa HOM05D005454 ORTHO05D006781 7.3e-60 233.8 127 89.0
BcaC08g47498 Brassica carinata HOM05D005454 ORTHO05D006781 9.5e-60 233.4 127 89.0
C06p53270 Brassica napus HOM05D005454 ORTHO05D006781 9.5e-60 233.4 127 89.0
BolC6t40345H Brassica oleracea HOM05D005454 ORTHO05D006781 9.5e-60 233.4 127 89.0
A07p27170 Brassica napus HOM05D005454 ORTHO05D006781 1.6e-59 232.6 127 88.2
BcaC08g45360 Brassica carinata HOM05D005454 ORTHO05D006781 2.1e-59 232.3 127 88.2
C06p29920 Brassica napus HOM05D005454 ORTHO05D006781 2.1e-59 232.3 127 88.2
BraA07t30361Z Brassica rapa HOM05D005454 ORTHO05D006781 2.1e-59 232.3 127 88.2
AL2G40000 Arabidopsis lyrata HOM05D005454 ORTHO05D006781 4.7e-59 231.1 124 91.1
Carub.0002s2625 Capsella rubella HOM05D005454 ORTHO05D006781 8.1e-59 230.3 127 89.8
BolC6t38153H Brassica oleracea HOM05D005454 ORTHO05D006781 2.4e-58 228.8 127 87.4
THA.LOC104808143 Tarenaya hassleriana HOM05D005454 ORTHO05D006781 2.7e-54 215.3 121 84.3
THA.LOC104812391 Tarenaya hassleriana HOM05D005454 ORTHO05D006781 1.1e-52 209.9 123 82.1
Atru.chr1.44 Acer truncatum HOM05D005454 ORTHO05D006781 3.1e-50 201.8 124 75.0
Manes.16G045300 Manihot esculenta HOM05D005454 ORTHO05D006781 4.0e-50 201.4 126 74.6
Sabra08G0060600 Salix brachista HOM05D005454 ORTHO05D006781 4.0e-50 201.4 126 73.8
Gohir.A02G014000 Gossypium hirsutum HOM05D005454 ORTHO05D006781 1.5e-49 199.5 125 74.4
Gohir.D01G133900 Gossypium hirsutum HOM05D005454 ORTHO05D006781 3.4e-49 198.4 118 78.0
Gorai.002G165600 Gossypium raimondii HOM05D005454 ORTHO05D006781 3.4e-49 198.4 118 78.0
Duzib251G0225 Durio zibethinus HOM05D005454 ORTHO05D006781 4.4e-49 198.0 128 71.1
SalBow8G4406 Salvia bowleyana HOM05D005454 ORTHO05D006781 4.4e-49 198.0 122 76.2
SalBow8G5040 Salvia bowleyana HOM05D005454 ORTHO05D006781 4.4e-49 198.0 122 76.2
TWI59G0830 Tripterygium wilfordii HOM05D005454 ORTHO05D006781 7.6e-49 197.2 126 73.8
COL.COLO4_19518 Corchorus olitorius HOM05D005454 ORTHO05D006781 9.9e-49 196.8 126 70.6
CiPaw.15G112200 Carya illinoinensis HOM05D005454 ORTHO05D006781 1.7e-48 196.1 126 70.6
Migut.M01498 Erythranthe guttata HOM05D005454 ORTHO05D006781 1.7e-48 196.1 124 74.2
QL04p094645 Quercus lobata HOM05D005454 ORTHO05D006781 1.7e-48 196.1 126 72.2
QL04p094846 Quercus lobata HOM05D005454 ORTHO05D006781 1.7e-48 196.1 126 72.2
SGA_v2.0_scaffold186G40175 Striga asiatica HOM05D005454 ORTHO05D006781 2.2e-48 195.7 124 75.0
Nitab4.5_0006630g0030 Nicotiana tabacum HOM05D005454 ORTHO05D006781 2.9e-48 195.3 126 71.4
Thecc.02G245200 Theobroma cacao HOM05D005454 ORTHO05D006781 2.9e-48 195.3 116 75.9
TAR626G0894 Trochodendron aralioides HOM05D005454 ORTHO05D006781 3.8e-48 194.9 126 70.6
TWI38G1327 Tripterygium wilfordii HOM05D005454 ORTHO05D006781 4.9e-48 194.5 126 73.0
unitig_32.g11075 Utricularia gibba HOM05D005454 ORTHO05D006781 4.9e-48 194.5 114 77.2
Cpa.g.sc32.137 Carica papaya HOM05D005454 ORTHO05D006781 6.4e-48 194.1 121 71.9
Potri.008G081400 Populus trichocarpa HOM05D005454 ORTHO05D006781 1.1e-47 193.4 116 76.7
Nitab4.5_0004200g0060 Nicotiana tabacum HOM05D005454 ORTHO05D006781 2.4e-47 192.2 126 70.6
Oeu029453.1 Olea europaea HOM05D005454 ORTHO05D006781 2.4e-47 192.2 126 69.8
Duzib248G0167 Durio zibethinus HOM05D005454 ORTHO05D006781 3.2e-47 191.8 116 75.9
GSVIVG01036708001 Vitis vinifera HOM05D005454 ORTHO05D006781 3.2e-47 191.8 121 72.7
Peaxi162Scf00286g00452 Petunia axillaris HOM05D005454 ORTHO05D006781 4.2e-47 191.4 126 69.8
CAN.G710.29 Capsicum annuum HOM05D005454 ORTHO05D006781 1.2e-46 189.9 126 68.3
PGSC0003DMG400011901 Solanum tuberosum HOM05D005454 ORTHO05D006781 1.2e-46 189.9 126 69.0
MSTRG.16083 Avicennia marina HOM05D005454 ORTHO05D006781 1.6e-46 189.5 119 74.8
Nn7g38402 Nelumbo nucifera HOM05D005454 ORTHO05D006781 1.6e-46 189.5 124 70.2
Sed0024280 Sechium edule HOM05D005454 ORTHO05D006781 1.6e-46 189.5 119 72.3
vmacro09764 Vaccinium macrocarpon HOM05D005454 ORTHO05D006781 1.6e-46 189.5 126 68.3
Ciclev10006210m.g Citrus clementina HOM05D005454 ORTHO05D006781 2.1e-46 189.1 118 72.0
CsaV3_6G013400 Cucumis sativus L. HOM05D005454 ORTHO05D006781 2.7e-46 188.7 126 68.3
Solyc09g098140.4 Solanum lycopersicum HOM05D005454 ORTHO05D006781 4.6e-46 188.0 126 68.3
Sopen09g036090 Solanum pennellii HOM05D005454 ORTHO05D006781 4.6e-46 188.0 126 68.3
Os02g0495900 Oryza sativa ssp. japonica HOM05D005454 ORTHO05D006781 6.0e-46 187.6 121 71.9
Zm00001eb241290 Zea mays HOM05D005454 ORTHO05D006781 7.8e-46 187.2 118 73.7
Actinidia00854 Actinidia chinensis HOM05D005454 ORTHO05D006781 1.7e-45 186.0 126 66.7
Cc00_g09040 Coffea canephora HOM05D005454 ORTHO05D006781 2.3e-45 185.7 126 66.7
PGR102G3369 Punica granatum HOM05D005454 ORTHO05D006781 3.9e-45 184.9 118 71.2
CANSAT56G0738 Cannabis sativa HOM05D005454 ORTHO05D006781 5.1e-45 184.5 119 70.6
CANSAT56G1199 Cannabis sativa HOM05D005454 ORTHO05D006781 5.1e-45 184.5 119 70.6
PSO675G7587 Papaver somniferum HOM05D005454 ORTHO05D006781 5.1e-45 184.5 114 75.4
Ah.02g115510 Amaranthus hybridus HOM05D005454 ORTHO05D006781 6.6e-45 184.1 118 72.9
Lsat_1_v5_gn_5_184081 Lactuca sativa HOM05D005454 ORTHO05D006781 6.6e-45 184.1 122 68.0
ClCG02G018790 Citrullus lanatus HOM05D005454 ORTHO05D006781 8.7e-45 183.7 126 67.5
RcHm_v2.0_Chr5g0023201 Rosa chinensis HOM05D005454 ORTHO05D006781 1.1e-44 183.3 120 70.8
ATR0820G041 Amborella trichopoda HOM05D005454 ORTHO05D006781 1.5e-44 183.0 114 73.7
CiPaw.15G112600 Carya illinoinensis HOM05D005454 ORTHO05D006781 3.3e-44 181.8 148 59.5
Eucgr.F04477 Eucalyptus grandis HOM05D005454 ORTHO05D006781 3.3e-44 181.8 116 72.4
Prupe.4G126700 Prunus persica HOM05D005454 ORTHO05D006781 3.3e-44 181.8 126 65.1
Sc18g0003140 Simmondsia chinensis HOM05D005454 ORTHO05D006781 3.3e-44 181.8 113 75.2
Hund10936 Selenicereus undatus HOM05D005454 ORTHO05D006781 4.3e-44 181.4 118 71.2
Aqoxy1G01376 Aquilegia oxysepala HOM05D005454 ORTHO05D006781 7.3e-44 180.6 123 68.3
MD10G1217600 Malus domestica HOM05D005454 ORTHO05D006781 7.3e-44 180.6 126 65.1
Sabra10G0134500 Salix brachista HOM05D005454 ORTHO05D006781 1.3e-43 179.9 126 67.5
VMungo1215G2509 Vigna mungo HOM05D005454 ORTHO05D006781 1.3e-43 179.9 117 69.2
HanXRQChr13g0408901 Helianthus annuus HOM05D005454 ORTHO05D006781 3.6e-43 178.3 114 71.1
HanXRQChr13g0408931 Helianthus annuus HOM05D005454 ORTHO05D006781 3.6e-43 178.3 114 71.1
EL10Ac5g12502 Beta vulgaris HOM05D005454 ORTHO05D006781 6.2e-43 177.6 118 71.2
CiPaw.15G112400 Carya illinoinensis HOM05D005454 ORTHO05D006781 1.4e-42 176.4 140 60.0
FvH4_3g13970 Fragaria vesca HOM05D005454 ORTHO05D006781 1.8e-42 176.0 120 69.2
FAN11G3450 Fragaria x ananassa HOM05D005454 ORTHO05D006781 1.8e-42 176.0 120 69.2
Phvul.002G154100 Phaseolus vulgaris HOM05D005454 ORTHO05D006781 3.1e-42 175.3 115 67.0
FAN16G0850 Fragaria x ananassa HOM05D005454 ORTHO05D006781 4.0e-42 174.9 120 68.3
FAN21G1174 Fragaria x ananassa HOM05D005454 ORTHO05D006781 4.0e-42 174.9 120 68.3
Glyma.11G026500 Glycine max HOM05D005454 ORTHO05D006781 5.3e-42 174.5 117 66.7
AUR62030518 Chenopodium quinoa HOM05D005454 ORTHO05D006781 6.9e-42 174.1 118 70.3
AUR62030774 Chenopodium quinoa HOM05D005454 ORTHO05D006781 6.9e-42 174.1 118 70.3
Rhsim04G0003500 Rhododendron simsii HOM05D005454 ORTHO05D006781 6.9e-42 174.1 142 59.2
Glyma.01G216400 Glycine max HOM05D005454 ORTHO05D006781 1.2e-41 173.3 117 66.7
ECA240G0828 Erigeron canadensis HOM05D005454 ORTHO05D006781 1.5e-41 172.9 126 63.5
Lj3g0001328 Lotus japonicus HOM05D005454 ORTHO05D006781 4.5e-41 171.4 117 66.7
Ca_26272_v3 Cicer arietinum L. HOM05D005454 ORTHO05D006781 9.9e-41 170.2 115 66.1
Dinv42456 Davidia involucrata HOM05D005454 ORTHO05D006781 1.7e-40 169.5 117 65.8
Lalb_Chr03g0031911 Lupinus albus HOM05D005454 ORTHO05D006781 2.2e-40 169.1 117 65.0
MELO3C019617.2 Cucumis melo HOM05D005454 ORTHO05D006781 3.8e-40 168.3 147 57.1
FAN25G3791 Fragaria x ananassa HOM05D005454 ORTHO05D006781 3.8e-40 168.3 120 65.8
MD05G1239400 Malus domestica HOM05D005454 ORTHO05D006781 4.9e-40 167.9 116 66.4
Medtr8g447300 Medicago truncatula HOM05D005454 ORTHO05D006781 6.4e-40 167.5 112 66.1
Psat4g141200 Pisum sativum HOM05D005454 ORTHO05D006781 6.4e-40 167.5 112 67.0
SEGI_00588 Sequoiadendron giganteum HOM05D005454 ORTHO05D006781 6.4e-40 167.5 116 66.4
arahy.Tifrunner.gnm1.ann1.DLUG3E Arachis hypogaea HOM05D005454 ORTHO05D006781 1.4e-39 166.4 122 64.8
MBI13_g09219_MAGBIO Magnolia biondii HOM05D005454 ORTHO05D006781 1.9e-39 166.0 113 71.7
TPR.G8202 Trifolium pratense HOM05D005454 ORTHO05D006781 1.9e-39 166.0 114 64.9
arahy.Tifrunner.gnm1.ann1.TLTS2V Arachis hypogaea HOM05D005454 ORTHO05D006781 3.2e-39 165.2 125 63.2
Sp5g34440 Schrenkiella parvula HOM05D005454 ORTHO05D006781 4.3e-36 154.8 84 92.9
A07p44460 Brassica napus HOM05D005454 ORTHO05D006781 5.6e-28 127.9 68 83.8
CDE02G1314 Ceratophyllum demersum HOM05D000236 ORTHO05D000192 1.4e-26 123.2 85 69.4
Mapoly0011s0156 Marchantia polymorpha HOM05D005454 ORTHO05D006781 7.6e-25 117.5 112 50.0
CARHR073040 Cardamine hirsuta HOM05D005454 ORTHO05D006781 4.9e-24 114.8 60 86.7
Haze_01788 Corylus avellana HOM05D005454 ORTHO05D006781 6.5e-24 114.4 72 66.7
AagrBONN_evm.TU.Sc2ySwM_117.1988 Anthoceros agrestis HOM05D005454 ORTHO05D006781 8.4e-24 114.0 112 47.3
Cfa017755 Carpinus fangiana HOM05D005454 ORTHO05D006781 5.5e-23 111.3 68 69.1
Haze_08480 Corylus avellana HOM05D005454 ORTHO05D006781 7.1e-23 110.9 68 67.6
Haze_18487 Corylus avellana HOM05D005454 ORTHO05D006781 7.1e-23 110.9 67 70.1
Pp3c27_5100 Physcomitrium patens HOM05D005454 ORTHO05D006781 7.1e-23 110.9 112 44.6
Gohir.A03G171875 Gossypium hirsutum HOM05D005454 ORTHO05D006781 1.6e-22 109.8 73 65.8
BolC8t48807H Brassica oleracea HOM05D005454 ORTHO05D006781 1.3e-21 106.7 59 88.1
CARHR073050 Cardamine hirsuta HOM05D005454 ORTHO05D006781 1.8e-21 106.3 58 89.7
HPP92_015989 Vanilla planifolia HOM05D005454 ORTHO05D006781 3.9e-21 105.1 75 60.0
CBR_g2846 Chara braunii HOM05D005454 ORTHO05D006781 1.5e-20 103.2 114 44.7
CSS0036802 Camellia sinensis var. sinensis HOM05D005454 ORTHO05D006781 2.5e-20 102.4 67 64.2
Hma1.2p1_0151F.1_g066990 Hydrangea macrophylla HOM05D005454 ORTHO05D006781 1.6e-19 99.8 68 60.3
Nn7g38396 Nelumbo nucifera HOM05D005454 ORTHO05D006781 8.2e-19 97.4 77 55.8
Atru.chr1.31 Acer truncatum HOM05D005454 ORTHO05D006781 9.0e-18 94.0 79 62.0
Cfa017757 Carpinus fangiana HOM05D005454 ORTHO05D006781 2.6e-17 92.4 58 75.9
C06p00690 Brassica napus HOM05D005454 ORTHO05D006781 4.5e-17 91.7 69 69.6
BolC6t35206H Brassica oleracea HOM05D005454 ORTHO05D006781 4.5e-17 91.7 52 86.5
QL04p094659 Quercus lobata HOM05D005454 ORTHO05D006781 5.9e-17 91.3 59 76.3
Potri.010G174700 Populus trichocarpa HOM05D005454 ORTHO05D006781 1.0e-16 90.5 59 74.6
C03p71170 Brassica napus HOM05D005454 ORTHO05D006781 1.7e-16 89.7 69 68.1
CDE04G2596 Ceratophyllum demersum HOM05D005454 ORTHO05D006781 5.0e-16 88.2 71 56.3
BcaC08g42854 Brassica carinata HOM05D005454 ORTHO05D006781 6.5e-16 87.8 44 93.2
Actinidia03633 Actinidia chinensis HOM05D005454 ORTHO05D012925 1.1e-15 87.0 61 68.9
Gohir.A04G138000 Gossypium hirsutum HOM05D005454 ORTHO05D006781 7.2e-15 84.3 57 68.4
DCAR_013713 Daucus carota HOM05D005454 ORTHO05D006781 1.6e-14 83.2 108 42.6
Cc00_g28770 Coffea canephora HOM05D001769 ORTHO05D001695 1.1e-12 77.0 96 44.8
SMO367G0923 Selaginella moellendorffii HOM05D005454 ORTHO05D006781 1.1e-12 77.0 125 34.4
RcHm_v2.0_Chr5g0023191 Rosa chinensis HOM05D005454 ORTHO05D006781 2.5e-12 75.9 69 49.3
SGA_v2.0_scaffold29G12256 Striga asiatica HOM05D005454 ORTHO05D006781 1.9e-07 59.7 46 58.7


User provided reference genes

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