Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG4G16180 Aethionema arabicum HOM05D003853 ORTHO05D004171 8.7e-63 243.8 157 100.0
BcaB03g13120 Brassica carinata HOM05D003853 ORTHO05D004171 3.4e-43 178.7 157 72.6
BolC8t49263H Brassica oleracea HOM05D003853 ORTHO05D004171 7.7e-43 177.6 159 78.0
CARHR014300 Cardamine hirsuta HOM05D003853 ORTHO05D004171 3.2e-41 172.2 159 73.0
BcaC07g38709 Brassica carinata HOM05D003853 ORTHO05D004171 2.7e-40 169.1 159 74.2
Sp1g12030 Schrenkiella parvula HOM05D003853 ORTHO05D004171 3.6e-40 168.7 159 64.2
BraA08t35142Z Brassica rapa HOM05D003853 ORTHO05D004171 1.8e-39 166.4 165 75.2
C08p16390 Brassica napus HOM05D003853 ORTHO05D004171 2.0e-38 162.9 119 77.3
Thhalv10008975m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 2.0e-38 162.9 162 71.0
BcaB03g13123 Brassica carinata HOM05D003853 ORTHO05D004171 9.7e-38 160.6 110 80.0
AL1G25770 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 1.1e-36 157.1 159 64.2
AT1G13930 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 1.1e-36 157.1 159 75.5
Carub.0001s1363 Capsella rubella HOM05D003853 ORTHO05D004171 7.0e-36 154.5 162 74.7
A02p33450 Brassica napus HOM05D003853 ORTHO05D004171 1.7e-34 149.8 173 59.0
BcaC03g17214 Brassica carinata HOM05D003853 ORTHO05D004171 3.8e-34 148.7 168 62.5
BolC2t11232H Brassica oleracea HOM05D003853 ORTHO05D004171 3.8e-34 148.7 168 62.5
BolC8t49264H Brassica oleracea HOM05D003853 ORTHO05D004171 6.5e-34 147.9 109 77.1
BraA02t08366Z Brassica rapa HOM05D003853 ORTHO05D004171 8.5e-34 147.5 168 60.1
BcaC07g38710 Brassica carinata HOM05D003853 ORTHO05D004171 1.5e-33 146.7 119 72.3
C02p51440 Brassica napus HOM05D003853 ORTHO05D004171 1.9e-33 146.4 173 60.1
C08p16400 Brassica napus HOM05D003853 ORTHO05D004171 1.9e-33 146.4 109 76.1
BcaC06g33998 Brassica carinata HOM05D003853 ORTHO05D004171 2.5e-33 146.0 178 57.3
C07p33870 Brassica napus HOM05D003853 ORTHO05D004171 2.5e-33 146.0 178 57.3
BolC7t43901H Brassica oleracea HOM05D003853 ORTHO05D004171 2.5e-33 146.0 178 57.3
BraA06t27202Z Brassica rapa HOM05D003853 ORTHO05D004171 2.5e-33 146.0 178 57.9
BcaB07g30301 Brassica carinata HOM05D003853 ORTHO05D004171 5.5e-33 144.8 172 61.0
BcaC06g31183 Brassica carinata HOM05D003853 ORTHO05D004171 1.6e-32 143.3 178 54.5
A06p43140 Brassica napus HOM05D003853 ORTHO05D004171 1.6e-32 143.3 178 57.3
Thhalv10004968m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 2.3e-31 139.4 134 61.9
Sp2g14360 Schrenkiella parvula HOM05D003853 ORTHO05D004171 8.8e-31 137.5 181 56.9
CARHR145780 Cardamine hirsuta HOM05D003853 ORTHO05D004171 2.0e-30 136.3 188 55.9
BraA08t35141Z Brassica rapa HOM05D003853 ORTHO05D004171 3.3e-30 135.6 109 73.4
Carub.0005s0241 Capsella rubella HOM05D003853 ORTHO05D004171 7.5e-30 134.4 190 58.9
Aa31LG2G7160 Aethionema arabicum HOM05D006961 ORTHO05D008809 1.7e-29 133.3 180 54.4
AT2G03440 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 2.2e-29 132.9 188 54.3
A08p32180 Brassica napus HOM05D003853 ORTHO05D004171 2.2e-29 132.9 117 82.1
AL5G13190 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 3.7e-29 132.1 184 51.6
A08p32170 Brassica napus HOM05D003853 ORTHO05D004171 3.8e-26 122.1 132 59.1
Duzib251G0928 Durio zibethinus HOM05D003853 ORTHO05D004171 3.5e-19 99.0 134 53.0
Thecc.02G335600 Theobroma cacao HOM05D003853 ORTHO05D004171 1.3e-18 97.1 125 47.2
Lsat_1_v5_gn_4_11980 Lactuca sativa HOM05D003853 ORTHO05D004171 3.8e-18 95.5 80 62.5
Nn4g23335 Nelumbo nucifera HOM05D003853 ORTHO05D004171 6.5e-18 94.7 121 63.6
SGA_v2.0_scaffold36G14434 Striga asiatica HOM05D003853 ORTHO05D004171 8.6e-18 94.4 112 50.9
Gohir.A03G103000 Gossypium hirsutum HOM05D003853 ORTHO05D004171 1.5e-17 93.6 128 45.3
HanXRQChr10g0308121 Helianthus annuus HOM05D003853 ORTHO05D004171 1.5e-17 93.6 96 54.2
Duzib251G0287 Durio zibethinus HOM05D003853 ORTHO05D004171 1.9e-17 93.2 132 47.0
ECA234G0349 Erigeron canadensis HOM05D003853 ORTHO05D004171 1.9e-17 93.2 89 59.6
Manes.01G030100 Manihot esculenta HOM05D003853 ORTHO05D004171 2.5e-17 92.8 144 55.6
ClCG05G023860 Citrullus lanatus HOM05D003853 ORTHO05D004171 5.5e-17 91.7 157 50.3
Thecc.02G335500 Theobroma cacao HOM05D003853 ORTHO05D004171 5.5e-17 91.7 135 43.0
Sc04g0007740 Simmondsia chinensis HOM05D003853 ORTHO05D004171 7.2e-17 91.3 132 40.9
Haze_11978 Corylus avellana HOM05D003853 ORTHO05D004171 1.2e-16 90.5 154 52.6
Gorai.005G143900 Gossypium raimondii HOM05D003853 ORTHO05D004171 1.2e-16 90.5 137 42.3
Lalb_Chr05g0215091 Lupinus albus HOM05D003853 ORTHO05D004171 1.2e-16 90.5 81 60.5
CiPaw.05G127700 Carya illinoinensis HOM05D003853 ORTHO05D004171 1.6e-16 90.1 155 40.0
Oeu048150.1 Olea europaea HOM05D003853 ORTHO05D004171 2.1e-16 89.7 158 43.0
Dinv16707 Davidia involucrata HOM05D003853 ORTHO05D004171 3.6e-16 89.0 119 53.8
Gohir.D02G128200 Gossypium hirsutum HOM05D003853 ORTHO05D004171 3.6e-16 89.0 137 41.6
Phvul.002G168000 Phaseolus vulgaris HOM05D003853 ORTHO05D004171 3.6e-16 89.0 121 46.3
SGA_v2.0_scaffold16G07759 Striga asiatica HOM05D003853 ORTHO05D004171 3.6e-16 89.0 155 39.4
Ah.03g139140 Amaranthus hybridus HOM05D003853 ORTHO05D004171 4.7e-16 88.6 74 62.2
CsaV3_5G033160 Cucumis sativus L. HOM05D003853 ORTHO05D004171 4.7e-16 88.6 157 47.1
Cfa008902 Carpinus fangiana HOM05D003853 ORTHO05D004171 6.1e-16 88.2 154 41.6
AUR62007951 Chenopodium quinoa HOM05D003853 ORTHO05D004171 6.1e-16 88.2 85 52.9
Potri.008G093200 Populus trichocarpa HOM05D003853 ORTHO05D004171 6.1e-16 88.2 95 55.8
Lj4g0005239 Lotus japonicus HOM05D003853 ORTHO05D004171 1.0e-15 87.4 121 45.5
VMungo0251G2653 Vigna mungo HOM05D003853 ORTHO05D004171 1.0e-15 87.4 121 44.6
MELO3C012136.2 Cucumis melo HOM05D003853 ORTHO05D004171 1.4e-15 87.0 118 46.6
Glyma.07G226567 Glycine max HOM05D003853 ORTHO05D004171 1.4e-15 87.0 121 43.8
Glyma.07G226633 Glycine max HOM05D003853 ORTHO05D004171 1.4e-15 87.0 121 43.8
Hma1.2p1_0354F.1_g133590 Hydrangea macrophylla HOM05D003853 ORTHO05D004171 1.4e-15 87.0 161 50.3
Ah.02g126530 Amaranthus hybridus HOM05D003853 ORTHO05D004171 1.8e-15 86.7 76 60.5
CiPaw.05G127600 Carya illinoinensis HOM05D003853 ORTHO05D004171 2.3e-15 86.3 124 55.6
Nitab4.5_0015741g0010 Nicotiana tabacum HOM05D003853 ORTHO05D004171 5.2e-15 85.1 115 48.7
Glyma.20G027200 Glycine max HOM05D003853 ORTHO05D004171 1.2e-14 84.0 70 61.4
Sed0005785 Sechium edule HOM05D003853 ORTHO05D004171 2.0e-14 83.2 145 40.7
TWI75G0276 Tripterygium wilfordii HOM05D003853 ORTHO05D004171 2.0e-14 83.2 73 61.6
Migut.E00060 Erythranthe guttata HOM05D003853 ORTHO05D004171 2.6e-14 82.8 114 45.6
Potri.010G161200 Populus trichocarpa HOM05D003853 ORTHO05D004171 2.6e-14 82.8 78 55.1
MSTRG.7763 Avicennia marina HOM05D003853 ORTHO05D004171 3.4e-14 82.4 111 45.9
Eucgr.B03178 Eucalyptus grandis HOM05D003853 ORTHO05D004171 3.4e-14 82.4 79 59.5
QL03p071021 Quercus lobata HOM05D003853 ORTHO05D004171 3.4e-14 82.4 111 48.6
SalBow2G1698 Salvia bowleyana HOM05D003853 ORTHO05D004171 3.4e-14 82.4 139 46.8
COL.COLO4_27925 Corchorus olitorius HOM05D003853 ORTHO05D004171 4.4e-14 82.0 76 56.6
Sabra08G0070000 Salix brachista HOM05D003853 ORTHO05D004171 4.4e-14 82.0 129 45.0
Sopen05g007410 Solanum pennellii HOM05D003853 ORTHO05D004171 4.4e-14 82.0 113 46.9
AUR62003131 Chenopodium quinoa HOM05D003853 ORTHO05D004171 5.7e-14 81.6 78 52.6
PSO478G4998 Papaver somniferum HOM05D003853 ORTHO05D004171 5.7e-14 81.6 102 47.1
Psat7g135240 Pisum sativum HOM05D003853 ORTHO05D004171 5.7e-14 81.6 135 51.9
MSTRG.2322 Avicennia marina HOM05D003853 ORTHO05D004171 7.5e-14 81.3 95 47.4
Rhsim03G0019300 Rhododendron simsii HOM05D003853 ORTHO05D004171 7.5e-14 81.3 83 59.0
TAR622G0811 Trochodendron aralioides HOM05D003853 ORTHO05D004171 9.8e-14 80.9 98 49.0
Lj6P782T102 Lonicera japonica HOM05D003853 ORTHO05D004171 1.3e-13 80.5 98 52.0
QL03p071009 Quercus lobata HOM05D003853 ORTHO05D004171 2.8e-13 79.3 105 48.6
Sabra10G0122600 Salix brachista HOM05D003853 ORTHO05D004171 2.8e-13 79.3 125 42.4
Sabra10G0122700 Salix brachista HOM05D003853 ORTHO05D004171 2.8e-13 79.3 125 42.4
SalBow2G1975 Salvia bowleyana HOM05D003853 ORTHO05D004171 2.8e-13 79.3 96 50.0
Ciclev10033000m.g Citrus clementina HOM05D003853 ORTHO05D004171 3.7e-13 79.0 156 44.2
Sc04g0007730 Simmondsia chinensis HOM05D003853 ORTHO05D004171 3.7e-13 79.0 121 51.2
PGSC0003DMG400028384 Solanum tuberosum HOM05D003853 ORTHO05D004171 3.7e-13 79.0 103 50.5
Peaxi162Scf00314g00022 Petunia axillaris HOM05D003853 ORTHO05D004171 4.9e-13 78.6 70 58.6
Migut.L01216 Erythranthe guttata HOM05D003853 ORTHO05D004171 6.3e-13 78.2 113 43.4
ATR0111G024 Amborella trichopoda HOM05D003853 ORTHO05D004171 8.3e-13 77.8 123 39.8
Peaxi162Scf00314g00031 Petunia axillaris HOM05D003853 ORTHO05D004171 1.1e-12 77.4 116 45.7
MSTRG.735 Avicennia marina HOM05D003853 ORTHO05D004171 1.8e-12 76.6 68 58.8
Cpa.g.sc1.96 Carica papaya HOM05D003853 ORTHO05D004171 2.4e-12 76.3 115 42.6
QL03p070993 Quercus lobata HOM05D003853 ORTHO05D004171 2.4e-12 76.3 170 37.1
AUR62003133 Chenopodium quinoa HOM05D003853 ORTHO05D004171 3.1e-12 75.9 78 53.8
PSO017G6890 Papaver somniferum HOM05D003853 ORTHO05D004171 3.1e-12 75.9 78 53.8
Solyc04g005480.1 Solanum lycopersicum HOM05D003853 ORTHO05D004171 3.1e-12 75.9 96 46.9
Sopen04g001500 Solanum pennellii HOM05D003853 ORTHO05D004171 3.1e-12 75.9 96 46.9
SGA_v2.0_scaffold287G47154 Striga asiatica HOM05D003853 ORTHO05D004171 3.1e-12 75.9 114 46.5
unitig_699.g19910 Utricularia gibba HOM05D003853 ORTHO05D004171 5.4e-12 75.1 91 47.3
CDE02G2907 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 7.0e-12 74.7 72 58.3
PGSC0003DMG400035643 Solanum tuberosum HOM05D003853 ORTHO05D004171 9.2e-12 74.3 142 35.9
ECA246G1290 Erigeron canadensis HOM05D003853 ORTHO05D004171 1.2e-11 73.9 81 53.1
Sed0019389 Sechium edule HOM05D003853 ORTHO05D004171 2.0e-11 73.2 160 46.2
COL.COLO4_27926 Corchorus olitorius HOM05D003853 ORTHO05D004171 2.7e-11 72.8 125 40.0
Ca_18813_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 3.5e-11 72.4 78 51.3
Medtr4g082830 Medicago truncatula HOM05D003853 ORTHO05D004171 3.5e-11 72.4 85 49.4
Nitab4.5_0000014g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 3.5e-11 72.4 95 48.4
Nitab4.5_0002806g0050 Nicotiana tabacum HOM05D003853 ORTHO05D004171 3.5e-11 72.4 95 48.4
CSS0028215 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 5.9e-11 71.6 72 55.6
PGR102G0417 Punica granatum HOM05D003853 ORTHO05D004171 5.9e-11 71.6 71 56.3
PGR102G3239 Punica granatum HOM05D003853 ORTHO05D004171 5.9e-11 71.6 71 56.3
THA.LOC104805946 Tarenaya hassleriana HOM05D003853 ORTHO05D004171 7.8e-11 71.2 85 44.7
Ah.03g139160 Amaranthus hybridus HOM05D003853 ORTHO05D004171 1.0e-10 70.9 77 48.1
Cpa.g.sc1.97 Carica papaya HOM05D003853 ORTHO05D004171 1.0e-10 70.9 98 45.9
Psat7g135200 Pisum sativum HOM05D003853 ORTHO05D004171 1.0e-10 70.9 127 38.6
CANSAT64G1198 Cannabis sativa HOM05D003853 ORTHO05D004171 1.3e-10 70.5 109 56.0
CDE02G1866 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 1.3e-10 70.5 123 50.4
Medtr4g082860 Medicago truncatula HOM05D003853 ORTHO05D004171 2.3e-10 69.7 129 39.5
TPR.G2267 Trifolium pratense HOM05D003853 ORTHO05D004171 2.3e-10 69.7 136 45.6
vmacro22356 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 2.3e-10 69.7 93 50.5
Actinidia12318 Actinidia chinensis HOM05D003853 ORTHO05D004171 2.9e-10 69.3 91 50.5
CSS0045101 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 3.8e-10 68.9 73 53.4
AUR62007952 Chenopodium quinoa HOM05D003853 ORTHO05D004171 3.8e-10 68.9 67 55.2
MBI16_g00500_MAGBIO Magnolia biondii HOM05D003853 ORTHO05D004171 3.8e-10 68.9 85 49.4
Ah.03g139150 Amaranthus hybridus HOM05D003853 ORTHO05D004171 5.0e-10 68.6 139 38.1
Prupe.1G282500 Prunus persica HOM05D003853 ORTHO05D004171 5.0e-10 68.6 137 35.8
TPR.G34052 Trifolium pratense HOM05D003853 ORTHO05D004171 8.6e-10 67.8 128 38.3
Lsat_1_v5_gn_3_56161 Lactuca sativa HOM05D003853 ORTHO05D004171 1.1e-09 67.4 87 47.1
AUR62003132 Chenopodium quinoa HOM05D003853 ORTHO05D004171 1.5e-09 67.0 73 50.7
Peaxi162Scf00930g00051 Petunia axillaris HOM05D003853 ORTHO05D004171 1.5e-09 67.0 68 51.5
HanXRQChr15g0477051 Helianthus annuus HOM05D003853 ORTHO05D004171 3.3e-09 65.9 73 47.9
vmacro22355 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 3.3e-09 65.9 76 55.3
QL03p070977 Quercus lobata HOM05D003853 ORTHO05D004171 4.3e-09 65.5 136 36.8
HPP92_023639 Vanilla planifolia HOM05D003853 ORTHO05D004171 4.3e-09 65.5 90 42.2
Cc11_g12330 Coffea canephora HOM05D003853 ORTHO05D004171 5.6e-09 65.1 74 55.4
Lalb_Chr17g0341041 Lupinus albus HOM05D003853 ORTHO05D004171 5.6e-09 65.1 88 44.3
Nitab4.5_0000334g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 5.6e-09 65.1 99 45.5
DCAR_027453 Daucus carota HOM05D003853 ORTHO05D004171 7.3e-09 64.7 101 43.6
HPP92_023625 Vanilla planifolia HOM05D003853 ORTHO05D004171 1.2e-08 63.9 90 41.1
MD13G1065700 Malus domestica HOM05D003853 ORTHO05D004171 2.1e-08 63.2 78 47.4
Lj2g0020869 Lotus japonicus HOM05D003853 ORTHO05D004171 2.8e-08 62.8 77 46.8
SEGI_33923 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 2.8e-08 62.8 88 46.6
MD16G1064200 Malus domestica HOM05D003853 ORTHO05D004171 3.6e-08 62.4 74 47.3
Zm00001eb007060 Zea mays HOM05D003853 ORTHO05D004171 4.7e-08 62.0 75 50.7
FAN17G1589 Fragaria x ananassa HOM05D003853 ORTHO05D004171 6.1e-08 61.6 124 52.4
vmacro22354 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 6.1e-08 61.6 74 54.1
Actinidia28167 Actinidia chinensis HOM05D003853 ORTHO05D004171 8.0e-08 61.2 89 47.2
Os10g0330000 Oryza sativa ssp. japonica HOM05D003853 ORTHO05D004171 8.0e-08 61.2 77 49.4
TPR.G34063 Trifolium pratense HOM05D003853 ORTHO05D004171 8.0e-08 61.2 66 51.5
Manes.01G030000 Manihot esculenta HOM05D003853 ORTHO05D004171 1.0e-07 60.8 96 43.8
Zm00001eb334140 Zea mays HOM05D003853 ORTHO05D004171 1.0e-07 60.8 79 45.6
Ca_04944_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 1.4e-07 60.5 86 45.3
FAN12G3704 Fragaria x ananassa HOM05D002141 ORTHO05D002119 3.0e-07 59.3 125 54.4
Psat2g127960 Pisum sativum HOM05D003853 ORTHO05D004171 3.0e-07 59.3 77 46.8
SEGI_07999 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 5.2e-07 58.5 91 44.0
Medtr5g043660 Medicago truncatula HOM05D003853 ORTHO05D004171 6.8e-07 58.2 72 48.6
Sopen05g007400 Solanum pennellii HOM05D003853 ORTHO05D004171 1.5e-06 57.0 82 46.3


User provided reference genes

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