Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG4G14880 Aethionema arabicum HOM05D005081 ORTHO05D005506 3.6e-126 454.9 228 100.0
AL7G44130 Arabidopsis lyrata HOM05D005081 ORTHO05D005506 8.5e-67 257.7 235 63.0
Carub.0007s3114 Capsella rubella HOM05D005081 ORTHO05D005506 2.1e-65 253.1 237 61.2
AT5G35320 Arabidopsis thaliana HOM05D005081 ORTHO05D005506 4.7e-65 251.9 236 61.0
CARHR217350 Cardamine hirsuta HOM05D005081 ORTHO05D005506 1.1e-63 247.3 234 64.5
Thhalv10003466m.g Eutrema salsugineum HOM05D005081 ORTHO05D005506 1.3e-62 243.8 236 58.5
THA.LOC104808906 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 1.1e-53 214.2 233 54.1
THA.LOC104826579 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 1.1e-50 204.1 238 54.2
THA.LOC104815319 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 6.1e-49 198.4 233 49.8
Sp3g25120 Schrenkiella parvula HOM05D005081 ORTHO05D005506 9.8e-47 191.0 238 52.5
AL3G43930 Arabidopsis lyrata HOM05D005081 ORTHO05D005506 3.1e-45 186.0 227 52.9
A03p44750 Brassica napus HOM05D005081 ORTHO05D005506 5.9e-44 181.8 226 50.4
BraA03t13610Z Brassica rapa HOM05D005081 ORTHO05D005506 1.0e-43 181.0 226 50.0
Carub.0003s2733 Capsella rubella HOM05D005081 ORTHO05D005506 1.6e-36 157.1 223 46.2
Cpa.g.sc115.44 Carica papaya HOM05D005081 ORTHO05D005506 4.5e-36 155.6 241 46.9
CARHR103910 Cardamine hirsuta HOM05D005081 ORTHO05D005506 1.7e-35 153.7 226 44.2
GSVIVG01035163001 Vitis vinifera HOM05D005081 ORTHO05D005506 1.1e-34 151.0 244 43.9
BcaC01g03146 Brassica carinata HOM05D005081 ORTHO05D005506 2.8e-33 146.4 230 43.5
C03p55600 Brassica napus HOM05D005081 ORTHO05D005506 2.8e-33 146.4 230 43.5
BolC3t17837H Brassica oleracea HOM05D005081 ORTHO05D005506 2.8e-33 146.4 230 43.5
BcaB08g34509 Brassica carinata HOM05D005081 ORTHO05D005506 3.6e-33 146.0 219 47.0
FAN07G0684 Fragaria x ananassa HOM05D005081 ORTHO05D005506 4.7e-33 145.6 230 43.5
FAN17G0390 Fragaria x ananassa HOM05D005081 ORTHO05D005506 4.7e-33 145.6 230 43.5
FAN12G4058 Fragaria x ananassa HOM05D005081 ORTHO05D005506 6.1e-33 145.2 227 44.1
FvH4_4g06450 Fragaria vesca HOM05D005081 ORTHO05D005506 3.0e-32 142.9 227 43.6
TWI32G0620 Tripterygium wilfordii HOM05D005081 ORTHO05D005506 5.2e-32 142.1 236 44.5
FAN22G0520 Fragaria x ananassa HOM05D005081 ORTHO05D005506 6.8e-32 141.7 230 43.0
MELO3C017390.2 Cucumis melo HOM05D005081 ORTHO05D005506 8.9e-32 141.4 254 41.3
AUR62033253 Chenopodium quinoa HOM05D005081 ORTHO05D005506 1.2e-31 141.0 241 41.9
QL11p009451 Quercus lobata HOM05D005081 ORTHO05D005506 1.3e-30 137.5 230 44.8
ClCG06G014000 Citrullus lanatus HOM05D005081 ORTHO05D005506 2.2e-30 136.7 254 42.5
PGR044G2548 Punica granatum HOM05D005081 ORTHO05D005506 2.9e-30 136.3 244 47.1
AUR62021338 Chenopodium quinoa HOM05D005081 ORTHO05D005506 8.3e-30 134.8 241 40.2
RcHm_v2.0_Chr4g0398241 Rosa chinensis HOM05D005081 ORTHO05D005506 1.8e-29 133.7 227 44.5
CsaV3_1G032220 Cucumis sativus L. HOM05D005081 ORTHO05D005506 4.1e-29 132.5 257 41.6
Manes.15G189400 Manihot esculenta HOM05D005081 ORTHO05D005506 7.0e-29 131.7 233 40.8
Thhalv10009663m.g Eutrema salsugineum HOM05D005081 ORTHO05D005506 9.2e-29 131.3 207 44.0
Sed0028150 Sechium edule HOM05D005081 ORTHO05D005506 7.8e-28 128.3 237 42.2
Haze_19038 Corylus avellana HOM05D001026 ORTHO05D003027 2.9e-27 126.3 231 41.6
CiPaw.15G154600 Carya illinoinensis HOM05D005081 ORTHO05D005506 3.9e-27 125.9 233 42.1
Migut.L01903 Erythranthe guttata HOM05D005081 ORTHO05D005506 6.6e-27 125.2 244 39.8
MD13G1236100 Malus domestica HOM05D005081 ORTHO05D005506 8.6e-27 124.8 210 44.8
Solyc05g046310.3 Solanum lycopersicum HOM05D005081 ORTHO05D005506 1.1e-26 124.4 248 38.7
Hund26317 Selenicereus undatus HOM05D005081 ORTHO05D005506 1.9e-26 123.6 246 39.8
Eucgr.C02188 Eucalyptus grandis HOM05D005081 ORTHO05D005506 2.5e-26 123.2 260 38.8
Sopen00g006190 Solanum pennellii HOM05D005081 ORTHO05D005506 4.3e-26 122.5 248 37.9
Ciclev10012648m.g Citrus clementina HOM05D005081 ORTHO05D005506 1.2e-25 120.9 225 42.7
MSTRG.10457 Avicennia marina HOM05D005081 ORTHO05D005506 3.6e-25 119.4 243 41.6
Atru.chr12.2077 Acer truncatum HOM05D005081 ORTHO05D005506 4.7e-25 119.0 239 38.5
Gorai.012G008600 Gossypium raimondii HOM05D005081 ORTHO05D005506 4.7e-25 119.0 227 40.1
Sc08g0004640 Simmondsia chinensis HOM05D005081 ORTHO05D005506 4.7e-25 119.0 252 40.5
CiPaw.16G103000 Carya illinoinensis HOM05D005081 ORTHO05D005506 8.0e-25 118.2 244 40.6
Gohir.D04G006900 Gossypium hirsutum HOM05D005081 ORTHO05D005506 1.4e-24 117.5 227 39.6
PGSC0003DMG400013692 Solanum tuberosum HOM05D005081 ORTHO05D005506 1.8e-24 117.1 245 37.6
Gohir.A05G408500 Gossypium hirsutum HOM05D005081 ORTHO05D005506 2.3e-24 116.7 227 39.6
SGA_v2.0_scaffold63G21842 Striga asiatica HOM05D005081 ORTHO05D005506 2.3e-24 116.7 247 41.3
Oeu044689.1 Olea europaea HOM05D005081 ORTHO05D005506 6.8e-24 115.2 245 38.4
CANSAT80G2033 Cannabis sativa HOM05D005081 ORTHO05D005506 8.9e-24 114.8 249 37.3
Rhsim01G0113200 Rhododendron simsii HOM05D005081 ORTHO05D005506 8.9e-24 114.8 257 37.7
Sed0020945 Sechium edule HOM05D005081 ORTHO05D005506 8.9e-24 114.8 240 37.5
Duzib170G0058 Durio zibethinus HOM05D005081 ORTHO05D005506 1.2e-23 114.4 224 41.5
Prupe.1G067800 Prunus persica HOM05D005081 ORTHO05D005506 1.5e-23 114.0 210 42.4
Hund09052 Selenicereus undatus HOM05D005081 ORTHO05D005506 2.6e-23 113.2 243 35.8
Cc00_g16170 Coffea canephora HOM05D005081 ORTHO05D005506 3.4e-23 112.8 247 38.9
Thecc.09G189400 Theobroma cacao HOM05D005081 ORTHO05D005506 4.4e-23 112.5 224 39.3
Sabra06G0052800 Salix brachista HOM05D005081 ORTHO05D005506 5.8e-23 112.1 276 35.5
EL10Ac8g18324 Beta vulgaris HOM05D005081 ORTHO05D005506 7.5e-23 111.7 248 38.3
Oeu008926.1 Olea europaea HOM05D005081 ORTHO05D005506 7.5e-23 111.7 241 38.6
CSS0043250 Camellia sinensis var. sinensis HOM05D005081 ORTHO05D005506 9.8e-23 111.3 258 37.2
vmacro20793 Vaccinium macrocarpon HOM05D005081 ORTHO05D005506 1.3e-22 110.9 260 37.3
Medtr8g101480 Medicago truncatula HOM05D005081 ORTHO05D005506 1.7e-22 110.5 219 38.8
Ah.09g230120 Amaranthus hybridus HOM05D005081 ORTHO05D005506 2.2e-22 110.2 262 35.9
Ah.14g083630 Amaranthus hybridus HOM05D005081 ORTHO05D005506 2.2e-22 110.2 240 37.5
Nitab4.5_0000833g0060 Nicotiana tabacum HOM05D005081 ORTHO05D005506 2.9e-22 109.8 245 39.2
Potri.006G070900 Populus trichocarpa HOM05D005081 ORTHO05D005506 3.7e-22 109.4 269 36.8
Nitab4.5_0011475g0010 Nicotiana tabacum HOM05D005081 ORTHO05D005506 6.4e-22 108.6 248 36.3
Actinidia29969 Actinidia chinensis HOM05D005081 ORTHO05D005506 8.3e-22 108.2 249 37.8
HanXRQChr03g0067191 Helianthus annuus HOM05D005081 ORTHO05D005506 1.1e-21 107.8 234 37.2
Hma1.2p1_0022F.1_g014783 Hydrangea macrophylla HOM05D005081 ORTHO05D005506 1.1e-21 107.8 252 34.9
MBI16_g18201_MAGBIO Magnolia biondii HOM05D005081 ORTHO05D005506 2.4e-21 106.7 259 37.1
Aqoxy7G02679 Aquilegia oxysepala HOM05D005081 ORTHO05D005506 4.1e-21 105.9 247 40.1
Actinidia38513 Actinidia chinensis HOM05D005081 ORTHO05D005506 1.2e-20 104.4 239 38.5
Duzib168G1013 Durio zibethinus HOM05D005081 ORTHO05D005506 1.6e-20 104.0 228 39.9
Dinv02618 Davidia involucrata HOM05D005081 ORTHO05D005506 2.7e-20 103.2 201 40.3
PSO063G3463 Papaver somniferum HOM05D005081 ORTHO05D005506 2.7e-20 103.2 258 36.4
Potri.018G132600 Populus trichocarpa HOM05D005081 ORTHO05D005506 2.7e-20 103.2 273 35.2
Peaxi162Scf00315g00813 Petunia axillaris HOM05D005081 ORTHO05D005506 3.5e-20 102.8 243 34.6
Lalb_Chr05g0223691 Lupinus albus HOM05D005081 ORTHO05D005506 4.6e-20 102.4 221 36.7
Nitab4.5_0010835g0010 Nicotiana tabacum HOM05D005081 ORTHO05D005506 4.6e-20 102.4 245 35.9
unitig_899.g15188 Utricularia gibba HOM05D005081 ORTHO05D005506 6.0e-20 102.1 249 33.3
Lj4g0023825 Lotus japonicus HOM05D005081 ORTHO05D005506 1.3e-19 100.9 226 37.2
PSO170G2950 Papaver somniferum HOM05D005081 ORTHO05D005506 1.7e-19 100.5 258 36.0
Peaxi162Scf00889g00221 Petunia axillaris HOM05D005081 ORTHO05D005506 6.6e-19 98.6 248 34.3
TAR625G0352 Trochodendron aralioides HOM05D005081 ORTHO05D005506 6.6e-19 98.6 246 35.4
Ca_17410_v3 Cicer arietinum L. HOM05D005081 ORTHO05D005506 1.6e-17 94.0 238 36.6
Lsat_1_v5_gn_7_59220 Lactuca sativa HOM05D005081 ORTHO05D005506 2.1e-17 93.6 251 33.5
Nitab4.5_0000053g0180 Nicotiana tabacum HOM05D005081 ORTHO05D005506 2.8e-17 93.2 246 34.1
SalBow6G6882 Salvia bowleyana HOM05D005081 ORTHO05D005506 3.6e-17 92.8 247 32.0
TAR383G1035 Trochodendron aralioides HOM05D005081 ORTHO05D005506 4.7e-17 92.4 254 34.6
MSTRG.26528 Avicennia marina HOM05D005081 ORTHO05D005506 4.0e-16 89.4 249 36.1
HanXRQChr10g0303491 Helianthus annuus HOM05D005081 ORTHO05D005506 6.8e-16 88.6 237 33.8
ECA240G1118 Erigeron canadensis HOM05D005081 ORTHO05D005506 8.9e-16 88.2 250 34.4
Glyma.08G028300 Glycine max HOM05D005081 ORTHO05D005506 2.0e-15 87.0 221 36.7
DCAR_019825 Daucus carota HOM05D005081 ORTHO05D005506 3.4e-15 86.3 242 36.0
ECA234G2314 Erigeron canadensis HOM05D005081 ORTHO05D005506 5.8e-15 85.5 233 32.6
ATR0626G171 Amborella trichopoda HOM05D005081 ORTHO05D005506 2.9e-14 83.2 244 34.0
Hma1.2p1_0022F.1_g014780 Hydrangea macrophylla HOM05D005081 ORTHO05D005506 2.9e-14 83.2 230 35.7
arahy.Tifrunner.gnm1.ann1.TAK2NC Arachis hypogaea HOM05D005081 ORTHO05D005506 6.4e-14 82.0 154 42.9
Psat7g022000 Pisum sativum HOM05D005081 ORTHO05D005506 1.4e-13 80.9 128 43.0
arahy.Tifrunner.gnm1.ann1.FV9V0P Arachis hypogaea HOM05D005081 ORTHO05D005506 1.9e-13 80.5 154 42.9
CDE02G3184 Ceratophyllum demersum HOM05D005081 ORTHO05D005506 2.4e-13 80.1 206 33.0
Sabra18G0112300 Salix brachista HOM05D005081 ORTHO05D005506 2.4e-13 80.1 251 33.9
HPP92_017106 Vanilla planifolia HOM05D005081 ORTHO05D005506 2.4e-13 80.1 228 33.3
TPR.G25464 Trifolium pratense HOM05D005081 ORTHO05D005506 5.4e-13 79.0 238 32.8
HPP92_017096 Vanilla planifolia HOM05D005081 ORTHO05D005506 5.4e-13 79.0 228 32.9
VMungo0251G2709 Vigna mungo HOM05D005081 ORTHO05D005506 7.1e-13 78.6 218 35.3
Thhalv10000359m.g Eutrema salsugineum HOM05D001181 ORTHO05D005506 2.1e-12 77.0 61 62.3
Actinidia31880 Actinidia chinensis HOM05D005081 ORTHO05D005506 6.0e-12 75.5 225 34.7
Glyma.05G221800 Glycine max HOM05D005081 ORTHO05D005506 7.8e-12 75.1 230 32.6
Os02g0141500 Oryza sativa ssp. japonica HOM05D005081 ORTHO05D005506 1.3e-11 74.3 241 29.5
MBI13_g31561_MAGBIO Magnolia biondii HOM05D005081 ORTHO05D005506 3.9e-11 72.8 226 31.9
MD16G1241100 Malus domestica HOM05D005081 ORTHO05D005506 3.9e-11 72.8 98 50.0
Cc10_g11560 Coffea canephora HOM05D005081 ORTHO05D005506 1.1e-10 71.2 222 33.8
Phvul.002G303500 Phaseolus vulgaris HOM05D005081 ORTHO05D005506 1.6e-09 67.4 225 33.3
Thecc.09G002900 Theobroma cacao HOM05D005081 ORTHO05D005506 2.6e-07 60.1 231 29.4
Zm00001eb208100 Zea mays HOM05D005081 ORTHO05D005506 7.6e-07 58.5 187 31.0


User provided reference genes

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