Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG4G12760 Aethionema arabicum HOM05D004002 ORTHO05D004668 0.0e+00 2737.6 1383 100.0
Sp1g41730 Schrenkiella parvula HOM05D004002 ORTHO05D004668 0.0e+00 2239.5 1385 83.0
AT3G33530 Arabidopsis thaliana HOM05D004002 ORTHO05D004668 0.0e+00 2235.7 1386 83.3
AL5G20770 Arabidopsis lyrata HOM05D004002 ORTHO05D004668 0.0e+00 2226.8 1385 83.0
Carub.0016s0010 Capsella rubella HOM05D004002 ORTHO05D004668 0.0e+00 2217.2 1384 82.9
BcaC08g43677 Brassica carinata HOM05D004002 ORTHO05D004668 0.0e+00 2204.5 1383 82.2
C06p10960 Brassica napus HOM05D004002 ORTHO05D004668 0.0e+00 2199.5 1384 82.1
BolC6t36178H Brassica oleracea HOM05D004002 ORTHO05D004668 0.0e+00 2184.8 1405 80.9
BcaB07g33169 Brassica carinata HOM05D004002 ORTHO05D004668 0.0e+00 2171.7 1385 80.9
BraSC56t46385Z Brassica rapa HOM05D004002 ORTHO05D004668 0.0e+00 2168.7 1401 80.2
THA.LOC104811026 Tarenaya hassleriana HOM05D004002 ORTHO05D004668 0.0e+00 2070.0 1393 76.6
Thhalv10011188m.g Eutrema salsugineum HOM05D004002 ORTHO05D004668 0.0e+00 2067.7 1296 82.4
Duzib168G0398 Durio zibethinus HOM05D004002 ORTHO05D004668 0.0e+00 1771.9 1412 65.7
Thecc.09G129800 Theobroma cacao HOM05D004002 ORTHO05D004668 0.0e+00 1771.5 1406 65.6
Atru.chr7.1118 Acer truncatum HOM05D004002 ORTHO05D004668 0.0e+00 1770.7 1409 65.9
COL.COLO4_35123 Corchorus olitorius HOM05D004002 ORTHO05D004668 0.0e+00 1748.0 1411 64.6
Gorai.001G043400 Gossypium raimondii HOM05D004002 ORTHO05D004668 0.0e+00 1747.3 1400 64.7
CANSAT11G1469 Cannabis sativa HOM05D004002 ORTHO05D004668 0.0e+00 1744.6 1400 65.1
Ciclev10007259m.g Citrus clementina HOM05D004002 ORTHO05D004668 0.0e+00 1741.9 1410 64.7
Gohir.A07G036800 Gossypium hirsutum HOM05D004002 ORTHO05D004668 0.0e+00 1738.0 1400 64.4
Gohir.D07G040800 Gossypium hirsutum HOM05D004002 ORTHO05D004668 0.0e+00 1736.9 1398 64.4
CiPaw.03G246900 Carya illinoinensis HOM05D004002 ORTHO05D004668 0.0e+00 1732.6 1399 65.0
Cfa003405 Carpinus fangiana HOM05D004002 ORTHO05D004668 0.0e+00 1730.7 1404 64.8
Manes.14G114600 Manihot esculenta HOM05D004002 ORTHO05D004668 0.0e+00 1728.4 1405 64.2
TWI32G0682 Tripterygium wilfordii HOM05D004002 ORTHO05D004668 0.0e+00 1726.1 1399 64.6
Duzib187G1937 Durio zibethinus HOM05D004002 ORTHO05D004668 0.0e+00 1713.0 1406 64.2
Prupe.7G246700 Prunus persica HOM05D004002 ORTHO05D004668 0.0e+00 1711.8 1397 64.7
RcHm_v2.0_Chr2g0087941 Rosa chinensis HOM05D004002 ORTHO05D004668 0.0e+00 1710.7 1421 63.5
MD02G1028100 Malus domestica HOM05D004002 ORTHO05D004668 0.0e+00 1709.9 1405 64.1
Actinidia21966 Actinidia chinensis HOM05D004002 ORTHO05D004668 0.0e+00 1700.3 1413 64.2
FvH4_1g02820 Fragaria vesca HOM05D004002 ORTHO05D004668 0.0e+00 1698.3 1383 64.6
FAN28G1420 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1697.2 1392 64.4
Potri.018G128400 Populus trichocarpa HOM05D004002 ORTHO05D004668 0.0e+00 1696.0 1416 63.3
FAN19G2815 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1684.5 1405 64.1
TAR636G2372 Trochodendron aralioides HOM05D004002 ORTHO05D004668 0.0e+00 1677.9 1416 63.1
Glyma.13G158400 Glycine max HOM05D004002 ORTHO05D004668 0.0e+00 1674.8 1388 62.8
Gohir.A08G238400 Gossypium hirsutum HOM05D004002 ORTHO05D004668 0.0e+00 1669.1 1405 62.3
Gorai.004G276600 Gossypium raimondii HOM05D004002 ORTHO05D004668 0.0e+00 1663.7 1405 62.3
MD15G1169800 Malus domestica HOM05D004002 ORTHO05D004668 0.0e+00 1660.6 1402 62.9
Lj4g0004437 Lotus japonicus HOM05D004002 ORTHO05D004668 0.0e+00 1659.8 1386 62.3
Gohir.D08G259100 Gossypium hirsutum HOM05D004002 ORTHO05D004668 0.0e+00 1656.3 1414 61.6
ClCG06G011370 Citrullus lanatus HOM05D004002 ORTHO05D004668 0.0e+00 1653.6 1393 63.0
Ca_30460_v3 Cicer arietinum L. HOM05D004002 ORTHO05D004668 0.0e+00 1652.9 1382 62.2
Lalb_Chr13g0301701 Lupinus albus HOM05D004002 ORTHO05D004668 0.0e+00 1646.7 1390 62.9
FAN23G1361 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1644.4 1382 63.0
Medtr4g114930 Medicago truncatula HOM05D004002 ORTHO05D004668 0.0e+00 1639.8 1392 61.6
MELO3C010320.2 Cucumis melo HOM05D004002 ORTHO05D004668 0.0e+00 1632.1 1397 62.3
Cc06_g08210 Coffea canephora HOM05D004002 ORTHO05D004668 0.0e+00 1624.0 1408 61.7
Sopen07g003960 Solanum pennellii HOM05D004002 ORTHO05D004668 0.0e+00 1624.0 1382 61.6
Lalb_Chr12g0198051 Lupinus albus HOM05D004002 ORTHO05D004668 0.0e+00 1604.0 1397 60.7
arahy.Tifrunner.gnm1.ann1.S50ZLM Arachis hypogaea HOM05D004002 ORTHO05D004668 0.0e+00 1602.0 1416 59.7
QL02p089511 Quercus lobata HOM05D004002 ORTHO05D004668 0.0e+00 1601.6 1607 55.1
vmacro20578 Vaccinium macrocarpon HOM05D004002 ORTHO05D004668 0.0e+00 1601.6 1479 58.6
Nitab4.5_0001776g0030 Nicotiana tabacum HOM05D004002 ORTHO05D004668 0.0e+00 1601.3 1399 61.0
DCAR_014896 Daucus carota HOM05D004002 ORTHO05D004668 0.0e+00 1600.5 1389 61.4
arahy.Tifrunner.gnm1.ann1.R22NLQ Arachis hypogaea HOM05D004002 ORTHO05D004668 0.0e+00 1599.3 1403 59.9
CAN.G138.14 Capsicum annuum HOM05D004002 ORTHO05D004668 0.0e+00 1595.5 1390 60.8
THA.LOC104808973 Tarenaya hassleriana HOM05D004002 ORTHO05D004668 0.0e+00 1584.3 1402 60.3
HanXRQChr09g0241521 Helianthus annuus HOM05D004002 ORTHO05D004668 0.0e+00 1576.6 1409 59.1
Aqoxy7G02288 Aquilegia oxysepala HOM05D004002 ORTHO05D004668 0.0e+00 1575.5 1434 59.9
Lsat_1_v5_gn_7_43900 Lactuca sativa HOM05D004002 ORTHO05D004668 0.0e+00 1575.1 1417 59.1
Rhsim01G0066800 Rhododendron simsii HOM05D004002 ORTHO05D004668 0.0e+00 1571.2 1409 60.5
Sc18g0000460 Simmondsia chinensis HOM05D004002 ORTHO05D004668 0.0e+00 1567.0 1435 58.3
FAN26G1964 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1566.6 1411 60.5
Sed0021658 Sechium edule HOM05D004002 ORTHO05D004668 0.0e+00 1566.6 1402 60.3
Eucgr.C04259 Eucalyptus grandis HOM05D004002 ORTHO05D004668 0.0e+00 1562.4 1371 60.8
SalBow1G7082 Salvia bowleyana HOM05D004002 ORTHO05D004668 0.0e+00 1557.3 1394 60.8
MBI04_g29332_MAGBIO Magnolia biondii HOM05D004002 ORTHO05D004668 0.0e+00 1554.3 1415 59.8
AUR62013328 Chenopodium quinoa HOM05D004002 ORTHO05D004668 0.0e+00 1547.7 1407 59.3
GSVIVG01015557001 Vitis vinifera HOM05D004002 ORTHO05D004668 0.0e+00 1540.8 1353 60.6
PSO170G6007 Papaver somniferum HOM05D004002 ORTHO05D004668 0.0e+00 1530.4 1402 59.1
PSO017G4586 Papaver somniferum HOM05D004002 ORTHO05D004668 0.0e+00 1530.0 1407 59.0
Hund26527 Selenicereus undatus HOM05D004002 ORTHO05D004668 0.0e+00 1528.5 1392 59.6
Lsat_1_v5_gn_8_62220 Lactuca sativa HOM05D004002 ORTHO05D004668 0.0e+00 1524.2 1404 57.2
HanXRQChr05g0143441 Helianthus annuus HOM05D004002 ORTHO05D004668 0.0e+00 1518.4 1404 57.0
ECA236G2336 Erigeron canadensis HOM05D004002 ORTHO05D004668 0.0e+00 1518.1 1396 57.7
MSTRG.26413 Avicennia marina HOM05D004002 ORTHO05D004668 0.0e+00 1510.4 1350 59.9
Nn2g12080 Nelumbo nucifera HOM05D004002 ORTHO05D004668 0.0e+00 1509.6 1409 58.4
Ah.09g225140 Amaranthus hybridus HOM05D004002 ORTHO05D004668 0.0e+00 1507.7 1413 58.2
CsaV3_1G030400 Cucumis sativus L. HOM05D004002 ORTHO05D004668 0.0e+00 1505.7 1402 59.1
TPR.G26484 Trifolium pratense HOM05D004002 ORTHO05D004668 0.0e+00 1496.1 1384 57.8
Dinv36495 Davidia involucrata HOM05D004002 ORTHO05D004668 0.0e+00 1486.1 1398 57.2
AL4G19600 Arabidopsis lyrata HOM05D004002 ORTHO05D004668 0.0e+00 1485.3 1381 57.8
Carub.0004s0687 Capsella rubella HOM05D004002 ORTHO05D004668 0.0e+00 1483.4 1382 57.2
AT2G26610 Arabidopsis thaliana HOM05D004002 ORTHO05D004668 0.0e+00 1471.8 1389 56.8
SGA_v2.0_scaffold109G31044 Striga asiatica HOM05D004002 ORTHO05D004668 0.0e+00 1460.3 1428 56.4
DCAR_010315 Daucus carota HOM05D004002 ORTHO05D004668 0.0e+00 1457.6 1408 56.2
Aa31LG5G9160 Aethionema arabicum HOM05D004002 ORTHO05D004668 0.0e+00 1453.0 1400 57.4
CDE03G0124 Ceratophyllum demersum HOM05D004002 ORTHO05D004668 0.0e+00 1451.8 1397 56.3
EL10Ac8g18695 Beta vulgaris HOM05D004002 ORTHO05D004668 0.0e+00 1437.9 1428 56.0
FAN23G2019 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1402.9 1235 60.7
HPP92_024596 Vanilla planifolia HOM05D004002 ORTHO05D004668 0.0e+00 1394.8 1412 54.5
ATR1120G180 Amborella trichopoda HOM05D004002 ORTHO05D004668 0.0e+00 1385.2 1393 55.9
BcaC01g04911 Brassica carinata HOM05D004002 ORTHO05D004668 0.0e+00 1383.6 1375 54.5
A03p26850 Brassica napus HOM05D004002 ORTHO05D004668 0.0e+00 1380.5 1375 54.3
BraA03t11897Z Brassica rapa HOM05D004002 ORTHO05D004668 0.0e+00 1380.5 1375 54.3
AUR62011160 Chenopodium quinoa HOM05D004002 ORTHO05D004668 0.0e+00 1377.1 1301 57.3
BolC3t15561H Brassica oleracea HOM05D004002 ORTHO05D004668 0.0e+00 1375.1 1375 54.1
C03p32190 Brassica napus HOM05D004002 ORTHO05D004668 0.0e+00 1374.0 1374 54.2
Sp4g09400 Schrenkiella parvula HOM05D004002 ORTHO05D004668 0.0e+00 1369.4 1381 54.0
BcaB01g03030 Brassica carinata HOM05D004002 ORTHO05D004668 0.0e+00 1363.6 1376 53.9
Zm00001eb231770 Zea mays HOM05D004002 ORTHO05D004668 0.0e+00 1354.7 1387 54.4
Nitab4.5_0000028g0120 Nicotiana tabacum HOM05D004002 ORTHO05D004668 0.0e+00 1291.6 1153 59.5
Sabra18G0109200 Salix brachista HOM05D004002 ORTHO05D004668 0.0e+00 1231.9 1106 61.1
Ca_06931_v3 Cicer arietinum L. HOM05D004002 ORTHO05D004668 0.0e+00 1225.3 1059 62.0
Cpa.g.sc46.23 Carica papaya HOM05D004002 ORTHO05D004668 0.0e+00 1224.9 1488 48.5
Sed0028143 Sechium edule HOM05D004002 ORTHO05D004668 0.0e+00 1216.4 1071 61.3
Dinv41488 Davidia involucrata HOM05D004002 ORTHO05D004668 0.0e+00 1185.6 1002 63.0
SEGI_17541 Sequoiadendron giganteum HOM05D004002 ORTHO05D004668 0.0e+00 1157.9 1339 49.6
ECA240G2868 Erigeron canadensis HOM05D004002 ORTHO05D004668 0.0e+00 1114.8 847 67.2
Phvul.003G167101 Phaseolus vulgaris HOM05D004002 ORTHO05D004668 0.0e+00 1113.2 846 68.4
VMungo1215G3423 Vigna mungo HOM05D004002 ORTHO05D004668 0.0e+00 1112.8 847 67.8
Psat4g037880 Pisum sativum HOM05D004002 ORTHO05D004668 0.0e+00 1102.8 954 60.7
unitig_748.g7159 Utricularia gibba HOM05D004002 ORTHO05D004668 0.0e+00 1085.1 1428 47.3
Pp3c7_2590 Physcomitrium patens HOM05D004002 ORTHO05D004668 0.0e+00 1078.5 1426 44.5
Pp3c11_23650 Physcomitrium patens HOM05D004002 ORTHO05D004668 9.4e-310 1067.4 1419 44.5
Lj7C426G10 Lonicera japonica HOM05D004002 ORTHO05D004668 2.3e-308 1062.8 1038 57.6
Peaxi162Scf00891g00220 Petunia axillaris HOM05D004002 ORTHO05D004668 5.1e-308 1061.6 1057 56.3
CARHR153610 Cardamine hirsuta HOM05D004002 ORTHO05D004668 2.5e-307 1059.3 643 83.4
Mapoly0041s0113 Marchantia polymorpha HOM05D004002 ORTHO05D004668 2.7e-301 1039.3 1451 44.7
Migut.K00437 Erythranthe guttata HOM05D004002 ORTHO05D004668 1.2e-277 960.7 902 56.9
Os02g0137000 Oryza sativa ssp. japonica HOM05D004002 ORTHO05D004668 1.2e-259 901.0 730 65.3
SMO347G0439 Selaginella moellendorffii HOM05D004002 ORTHO05D004668 2.3e-255 886.7 1124 46.5
Nn8g39500 Nelumbo nucifera HOM05D004002 ORTHO05D004668 1.7e-250 870.5 664 67.9
AagrBONN_evm.TU.Sc2ySwM_368.2316 Anthoceros agrestis HOM05D004002 ORTHO05D004668 7.3e-246 855.1 1115 47.4
CBR_g41081 Chara braunii HOM05D004002 ORTHO05D004668 2.7e-232 810.1 1574 36.4
Haze_25541 Corylus avellana HOM05D004002 ORTHO05D004668 7.9e-208 728.8 966 47.1
Haze_25542 Corylus avellana HOM05D004002 ORTHO05D004668 9.3e-201 705.3 681 57.1
CsaV3_UNG026150 Cucumis sativus L. HOM05D004002 ORTHO05D004668 2.0e-179 634.4 761 51.0
Haze_25536 Corylus avellana HOM05D004002 ORTHO05D004668 4.2e-161 573.5 419 69.0
CsaV3_UNG023150 Cucumis sativus L. HOM05D004002 ORTHO05D004668 6.3e-157 559.7 591 54.8
SHI03370 Sapria himalayana HOM05D004002 ORTHO05D000023 5.9e-155 553.1 594 52.0
Psat4g037920 Pisum sativum HOM05D004002 ORTHO05D004668 2.8e-152 544.3 425 65.9
VMungo1215G0854 Vigna mungo HOM05D004002 ORTHO05D004668 2.7e-147 527.7 481 55.5
Migut.K00436 Erythranthe guttata HOM05D004002 ORTHO05D004668 1.5e-145 521.9 421 64.6
Oeu040328.1 Olea europaea HOM05D004002 ORTHO05D004668 3.7e-133 480.7 391 64.5
Sabra18G0109300 Salix brachista HOM05D004002 ORTHO05D004668 2.4e-119 434.9 340 63.8
Oeu012614.1 Olea europaea HOM05D004002 ORTHO05D004668 4.2e-116 424.1 555 44.3
Ca_06930_v3 Cicer arietinum L. HOM05D004002 ORTHO05D004668 7.8e-115 419.9 316 62.3
ECA240G1422 Erigeron canadensis HOM05D004002 ORTHO05D004668 2.3e-114 418.3 405 56.3
Lj7A426T59 Lonicera japonica HOM05D004002 ORTHO05D004668 1.3e-109 402.5 332 59.9
SHI03372 Sapria himalayana HOM05D004002 ORTHO05D004668 1.7e-109 402.1 340 60.3
Solyc07g008090.4 Solanum lycopersicum HOM05D004002 ORTHO05D004668 4.2e-108 397.5 331 58.6
Hund09270 Selenicereus undatus HOM05D004002 ORTHO05D004668 3.2e-92 344.7 258 69.4
Aqoxy7G02287 Aquilegia oxysepala HOM05D004002 ORTHO05D004668 3.0e-90 338.2 431 46.2
Solyc07g008075.1 Solanum lycopersicum HOM05D004002 ORTHO05D004668 1.1e-81 309.7 223 72.2
Haze_13487 Corylus avellana HOM05D004002 ORTHO05D004668 6.5e-77 293.9 238 60.5
Os02g0136933 Oryza sativa ssp. japonica HOM05D004002 ORTHO05D004668 6.5e-77 293.9 325 49.8
SEGI_36835 Sequoiadendron giganteum HOM05D004002 ORTHO05D004668 4.2e-76 291.2 316 48.7
Dinv41489 Davidia involucrata HOM05D004002 ORTHO05D004668 1.7e-61 242.7 264 51.5
CDE04G2506 Ceratophyllum demersum HOM05D004002 ORTHO05D004668 1.7e-56 226.1 279 47.3
SHI03368 Sapria himalayana HOM05D004002 ORTHO05D004668 7.0e-55 220.7 220 55.5
BcaB07g33170 Brassica carinata HOM05D004002 ORTHO05D002109 1.5e-44 186.4 125 74.4
Haze_18451 Corylus avellana HOM05D004002 ORTHO05D004668 1.1e-39 170.2 129 60.5
Lsat_1_v5_gn_0_43201 Lactuca sativa HOM05D004002 ORTHO05D004668 9.5e-36 157.1 115 67.8
Lsat_1_v5_gn_8_63461 Lactuca sativa HOM05D004002 ORTHO05D004668 2.2e-32 146.0 212 42.0
SHI03369 Sapria himalayana HOM05D004002 ORTHO05D004668 9.2e-31 140.6 116 58.6
Oeu040327.1 Olea europaea HOM05D004002 ORTHO05D004668 1.2e-30 140.2 119 58.0
Sp1g38940 Schrenkiella parvula HOM05D004002 ORTHO05D004668 5.6e-28 131.3 92 73.9
C09p47760 Brassica napus HOM05D004002 ORTHO05D004668 3.2e-23 115.5 61 86.9
C04p60270 Brassica napus HOM05D004002 ORTHO05D004668 1.2e-22 113.6 61 85.2
BolC8t50699H Brassica oleracea HOM05D004002 ORTHO05D004668 1.2e-22 113.6 61 85.2
BolC6t36594H Brassica oleracea HOM05D004002 ORTHO05D004668 6.0e-22 111.3 61 83.6
Hund09269 Selenicereus undatus HOM05D004002 ORTHO05D004668 2.3e-21 109.4 86 62.8
C06p14160 Brassica napus HOM05D004002 ORTHO05D004668 5.0e-21 108.2 58 84.5
Medtr8g073750 Medicago truncatula HOM05D004002 ORTHO05D004668 1.1e-18 100.5 137 42.3
QL02p089531 Quercus lobata HOM05D004002 ORTHO05D004668 2.2e-16 92.8 72 59.7
Cre10.g449950 Chlamydomonas reinhardtii HOM05D004002 ORTHO05D004668 1.9e-15 89.7 373 25.2
PSO541G4337 Papaver somniferum HOM05D004002 ORTHO05D004668 1.5e-12 80.1 79 57.0
ECA240G3712 Erigeron canadensis HOM05D004002 ORTHO05D004668 7.3e-12 77.8 88 45.5
RcHm_v2.0_Chr1g0384271 Rosa chinensis HOM05D004002 ORTHO05D004668 3.4e-09 68.9 54 57.4
TPR.G35745 Trifolium pratense HOM05D004002 ORTHO05D004668 2.2e-08 66.2 107 34.6
HanXRQChr14g0456471 Helianthus annuus HOM05D000103 ORTHO05D000001 5.4e-07 61.6 32 90.6
Aqoxy7G02056 Aquilegia oxysepala HOM05D004002 ORTHO05D004668 9.2e-07 60.8 100 40.0
HanXRQChr03g0064791 Helianthus annuus HOM05D004002 ORTHO05D004668 7.8e-06 57.8 49 61.2


User provided reference genes

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