Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG4G12680 Aethionema arabicum HOM05D002419 ORTHO05D005441 3.1e-50 201.4 99 100.0
Sp6g21950 Schrenkiella parvula HOM05D002419 ORTHO05D005441 7.7e-41 170.2 85 92.9
Aa31LG1G12400 Aethionema arabicum HOM05D002419 ORTHO05D005441 1.7e-40 169.1 86 95.3
BcaC02g12517 Brassica carinata HOM05D002419 ORTHO05D005441 1.9e-39 165.6 100 77.0
A10p17550 Brassica napus HOM05D002419 ORTHO05D005441 2.5e-39 165.2 85 89.4
BcaB08g36334 Brassica carinata HOM05D002419 ORTHO05D005441 7.2e-39 163.7 85 89.4
BcaC04g19694 Brassica carinata HOM05D002419 ORTHO05D005441 9.5e-39 163.3 85 89.4
C09p52960 Brassica napus HOM05D002419 ORTHO05D005441 9.5e-39 163.3 85 89.4
BolC9t58170H Brassica oleracea HOM05D002419 ORTHO05D005441 9.5e-39 163.3 85 89.4
BraA10t43836Z Brassica rapa HOM05D002419 ORTHO05D005441 1.2e-38 162.9 85 88.2
BolC4t26562H Brassica oleracea HOM05D002419 ORTHO05D005441 1.6e-38 162.5 100 76.0
Thhalv10014819m.g Eutrema salsugineum HOM05D002419 ORTHO05D005441 1.6e-38 162.5 85 88.2
THA.LOC104814839 Tarenaya hassleriana HOM05D002419 ORTHO05D005441 1.6e-38 162.5 86 88.4
BcaC08g46529 Brassica carinata HOM05D002419 ORTHO05D005441 2.1e-38 162.2 85 85.9
Cpa.g.sc8.318 Carica papaya HOM05D002419 ORTHO05D005441 2.1e-38 162.2 85 88.2
Ciclev10029381m.g Citrus clementina HOM05D002419 ORTHO05D005441 3.6e-38 161.4 85 88.2
BolC3t13754H Brassica oleracea HOM05D002419 ORTHO05D005441 6.1e-38 160.6 85 87.1
BcaB01g04654 Brassica carinata HOM05D002419 ORTHO05D005441 8.0e-38 160.2 85 87.1
Lsat_1_v5_gn_6_26220 Lactuca sativa HOM05D002419 ORTHO05D005441 8.0e-38 160.2 85 83.5
Hma1.2p1_0958F.1_g241480 Hydrangea macrophylla HOM05D002419 ORTHO05D005441 1.0e-37 159.8 85 85.9
THA.LOC104799485 Tarenaya hassleriana HOM05D002419 ORTHO05D005441 1.0e-37 159.8 86 87.2
A03p11170 Brassica napus HOM05D002419 ORTHO05D005441 1.4e-37 159.5 85 85.9
C03p12900 Brassica napus HOM05D002419 ORTHO05D005441 1.4e-37 159.5 85 85.9
BraA03t10433Z Brassica rapa HOM05D002419 ORTHO05D005441 1.4e-37 159.5 85 85.9
Cfa010014 Carpinus fangiana HOM05D002419 ORTHO05D005441 1.4e-37 159.5 100 76.0
Carub.0003s2777 Capsella rubella HOM05D002419 ORTHO05D005441 1.8e-37 159.1 85 84.7
Atru.chr3.3690 Acer truncatum HOM05D002419 ORTHO05D005441 2.3e-37 158.7 85 87.1
CSS0025233 Camellia sinensis var. sinensis HOM05D002419 ORTHO05D005441 3.0e-37 158.3 85 85.9
COL.COLO4_15624 Corchorus olitorius HOM05D002419 ORTHO05D005441 3.0e-37 158.3 85 87.1
Haze_23372 Corylus avellana HOM05D002419 ORTHO05D005441 4.0e-37 157.9 100 76.0
PGR119G1746 Punica granatum HOM05D002419 ORTHO05D005441 4.0e-37 157.9 85 85.9
GSVIVG01025135001 Vitis vinifera HOM05D002419 ORTHO05D005441 4.0e-37 157.9 100 76.0
Cc04_g16270 Coffea canephora HOM05D002419 ORTHO05D005441 5.2e-37 157.5 85 85.9
Ah.13g070120 Amaranthus hybridus HOM05D002419 ORTHO05D005441 8.8e-37 156.8 85 84.7
MSTRG.21143 Avicennia marina HOM05D002419 ORTHO05D005441 8.8e-37 156.8 85 85.9
QL01p037218 Quercus lobata HOM05D002419 ORTHO05D005441 1.2e-36 156.4 85 83.5
Rhsim01G0220200 Rhododendron simsii HOM05D002419 ORTHO05D005441 1.2e-36 156.4 85 84.7
Rhsim08G0250900 Rhododendron simsii HOM05D002419 ORTHO05D005441 1.2e-36 156.4 85 84.7
Actinidia03746 Actinidia chinensis HOM05D005177 ORTHO05D006175 1.5e-36 156.0 85 84.7
CiPaw.13G107100 Carya illinoinensis HOM05D002419 ORTHO05D005441 2.0e-36 155.6 100 74.0
Eucgr.J00952 Eucalyptus grandis HOM05D002419 ORTHO05D005441 2.0e-36 155.6 85 83.5
Oeu005909.2 Olea europaea HOM05D002419 ORTHO05D005441 2.0e-36 155.6 85 87.1
SGA_v2.0_scaffold61G21167 Striga asiatica HOM05D002419 ORTHO05D005441 2.0e-36 155.6 85 85.9
DCAR_006045 Daucus carota HOM05D002419 ORTHO05D005441 2.6e-36 155.2 85 83.5
ClCG02G020950 Citrullus lanatus HOM05D002419 ORTHO05D005441 3.4e-36 154.8 85 83.5
Gohir.A08G047300 Gossypium hirsutum HOM05D002419 ORTHO05D005441 3.4e-36 154.8 100 76.0
vmacro14463 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 3.4e-36 154.8 85 83.5
MELO3C025747.2 Cucumis melo HOM05D002419 ORTHO05D005441 4.4e-36 154.5 85 83.5
CsaV3_6G021640 Cucumis sativus L. HOM05D002419 ORTHO05D005441 4.4e-36 154.5 85 83.5
Gorai.004G058900 Gossypium raimondii HOM05D002419 ORTHO05D005441 4.4e-36 154.5 100 76.0
Hund28200 Selenicereus undatus HOM05D002419 ORTHO05D005441 4.4e-36 154.5 85 82.4
Hund28212 Selenicereus undatus HOM05D002419 ORTHO05D005441 4.4e-36 154.5 85 82.4
Thecc.01G220900 Theobroma cacao HOM05D002419 ORTHO05D005441 4.4e-36 154.5 85 84.7
AL8G36960 Arabidopsis lyrata HOM05D002419 ORTHO05D005441 5.7e-36 154.1 85 81.2
Sed0002828 Sechium edule HOM05D005177 ORTHO05D005441 5.7e-36 154.1 85 83.5
Gohir.D08G057700 Gossypium hirsutum HOM05D002419 ORTHO05D005441 7.5e-36 153.7 100 75.0
Manes.04G024900 Manihot esculenta HOM05D002419 ORTHO05D005441 7.5e-36 153.7 85 82.4
Nitab4.5_0002129g0060 Nicotiana tabacum HOM05D002419 ORTHO05D005441 9.8e-36 153.3 85 81.2
CARHR274010 Cardamine hirsuta HOM05D002419 ORTHO05D005441 1.3e-35 152.9 84 81.0
Migut.D02183 Erythranthe guttata HOM05D002419 ORTHO05D005441 1.3e-35 152.9 85 82.4
SalBow3G4510 Salvia bowleyana HOM05D002419 ORTHO05D005441 1.3e-35 152.9 85 82.4
PGSC0003DMG400027404 Solanum tuberosum HOM05D002419 ORTHO05D005441 1.3e-35 152.9 85 80.0
CANSAT54G0974 Cannabis sativa HOM05D002419 ORTHO05D005441 1.7e-35 152.5 85 83.5
Dinv32788 Davidia involucrata HOM05D002419 ORTHO05D005441 1.7e-35 152.5 85 82.4
Potri.006G228500 Populus trichocarpa HOM05D002419 ORTHO05D005441 1.7e-35 152.5 85 82.4
Potri.012G109400 Populus trichocarpa HOM05D002419 ORTHO05D005441 1.7e-35 152.5 85 82.4
Solyc11g072410.2 Solanum lycopersicum HOM05D002419 ORTHO05D005441 2.2e-35 152.1 85 80.0
Sopen11g030060 Solanum pennellii HOM05D002419 ORTHO05D005441 2.2e-35 152.1 85 80.0
EL10Ac5g12738 Beta vulgaris HOM05D002419 ORTHO05D005441 2.8e-35 151.8 85 80.0
AUR62019559 Chenopodium quinoa HOM05D002419 ORTHO05D005441 2.8e-35 151.8 85 78.8
Nitab4.5_0001802g0070 Nicotiana tabacum HOM05D006502 ORTHO05D007704 4.9e-35 151.0 85 78.8
Peaxi162Scf00389g00950 Petunia axillaris HOM05D002419 ORTHO05D005441 4.9e-35 151.0 85 78.8
TAR623G1637 Trochodendron aralioides HOM05D002419 ORTHO05D005441 4.9e-35 151.0 85 81.2
AUR62037871 Chenopodium quinoa HOM05D002419 ORTHO05D005441 6.3e-35 150.6 85 78.8
CDE02G0876 Ceratophyllum demersum HOM05D002419 ORTHO05D005441 8.3e-35 150.2 85 81.2
HanXRQChr13g0401511 Helianthus annuus HOM05D002419 ORTHO05D005441 8.3e-35 150.2 85 81.2
PSO339G1519 Papaver somniferum HOM05D002419 ORTHO05D005441 8.3e-35 150.2 84 81.0
PSO541G3116 Papaver somniferum HOM05D002419 ORTHO05D005441 8.3e-35 150.2 84 81.0
PSO675G4527 Papaver somniferum HOM05D002419 ORTHO05D005441 8.3e-35 150.2 84 81.0
Aqoxy5G03165 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 1.1e-34 149.8 85 82.4
CDE06G2731 Ceratophyllum demersum HOM05D002419 ORTHO05D005441 1.1e-34 149.8 85 81.2
Oeu037230.1 Olea europaea HOM05D002419 ORTHO05D005441 1.1e-34 149.8 85 83.5
Duzib138G1011 Durio zibethinus HOM05D002419 ORTHO05D005441 1.4e-34 149.4 85 82.4
RcHm_v2.0_Chr7g0223211 Rosa chinensis HOM05D002419 ORTHO05D005441 1.4e-34 149.4 85 80.0
TPR.G1260 Trifolium pratense HOM05D002419 ORTHO05D005441 1.4e-34 149.4 85 80.0
Duzib211G0283 Durio zibethinus HOM05D002419 ORTHO05D005441 2.4e-34 148.7 85 81.2
Duzib211G0640 Durio zibethinus HOM05D002419 ORTHO05D005441 2.4e-34 148.7 85 81.2
Aqoxy5G00056 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 3.1e-34 148.3 84 82.1
Ca_01433_v3 Cicer arietinum L. HOM05D002419 ORTHO05D005441 3.1e-34 148.3 85 78.8
FvH4_5g29720 Fragaria vesca HOM05D002419 ORTHO05D005441 3.1e-34 148.3 85 78.8
FAN04G1346 Fragaria x ananassa HOM05D002419 ORTHO05D005441 3.1e-34 148.3 85 78.8
FAN13G2429 Fragaria x ananassa HOM05D002419 ORTHO05D005441 3.1e-34 148.3 85 78.8
FAN18G2638 Fragaria x ananassa HOM05D002419 ORTHO05D005441 3.1e-34 148.3 85 78.8
Glyma.16G158000 Glycine max HOM05D002419 ORTHO05D005441 4.1e-34 147.9 85 80.0
Prupe.8G100300 Prunus persica HOM05D002419 ORTHO05D005441 5.4e-34 147.5 85 80.0
Sc06g0010580 Simmondsia chinensis HOM05D002419 ORTHO05D005441 5.4e-34 147.5 85 78.8
VMungo0245G0001 Vigna mungo HOM05D002419 ORTHO05D005441 5.4e-34 147.5 85 80.0
Ca_11594_v3 Cicer arietinum L. HOM05D002419 ORTHO05D005441 7.0e-34 147.1 85 77.6
ECA233G1138 Erigeron canadensis HOM05D002419 ORTHO05D005441 7.0e-34 147.1 85 77.6
Glyma.02G076000 Glycine max HOM05D002419 ORTHO05D005441 7.0e-34 147.1 85 80.0
MD10G1078500 Malus domestica HOM05D002419 ORTHO05D005441 7.0e-34 147.1 85 78.8
Phvul.004G086200 Phaseolus vulgaris HOM05D002419 ORTHO05D005441 7.0e-34 147.1 85 80.0
Prupe.1G205700 Prunus persica HOM05D002419 ORTHO05D005441 1.2e-33 146.4 85 78.8
Medtr5g087910 Medicago truncatula HOM05D002419 ORTHO05D005441 1.6e-33 146.0 85 77.6
ATR0564G250 Amborella trichopoda HOM05D002419 ORTHO05D005441 2.0e-33 145.6 85 76.5
Lalb_Chr10g0105941 Lupinus albus HOM05D002419 ORTHO05D005441 2.0e-33 145.6 85 78.8
Os07g0412400 Oryza sativa ssp. japonica HOM05D002419 ORTHO05D005441 2.0e-33 145.6 85 77.6
Zm00001eb305840 Zea mays HOM05D002419 ORTHO05D005441 2.7e-33 145.2 85 77.6
arahy.Tifrunner.gnm1.ann1.0PI3PU Arachis hypogaea HOM05D002419 ORTHO05D005441 3.5e-33 144.8 85 78.8
LjContig00564g0008442 Lotus japonicus HOM05D002419 ORTHO05D005441 3.5e-33 144.8 85 78.8
AT5G60340 Arabidopsis thaliana HOM05D002419 ORTHO05D005441 4.5e-33 144.4 85 77.6
arahy.Tifrunner.gnm1.ann1.LS5S44 Arachis hypogaea HOM05D002419 ORTHO05D005441 4.5e-33 144.4 85 78.8
arahy.Tifrunner.gnm1.ann1.P2RDRN Arachis hypogaea HOM05D002419 ORTHO05D005441 4.5e-33 144.4 85 78.8
MBI18_g31602_MAGBIO Magnolia biondii HOM05D002419 ORTHO05D005441 4.5e-33 144.4 85 77.6
Psat2g022600 Pisum sativum HOM05D002419 ORTHO05D005441 4.5e-33 144.4 85 77.6
FAN08G2817 Fragaria x ananassa HOM05D002419 ORTHO05D005441 5.9e-33 144.1 85 76.5
TWI31G0524 Tripterygium wilfordii HOM05D002419 ORTHO05D005441 5.9e-33 144.1 85 80.0
HPP92_005091 Vanilla planifolia HOM05D002419 ORTHO05D005441 1.0e-32 143.3 85 75.3
VMungo1080G0265 Vigna mungo HOM05D002419 ORTHO05D005441 1.3e-32 142.9 85 77.6
Nn5g28456 Nelumbo nucifera HOM05D002419 ORTHO05D005441 1.7e-32 142.5 85 77.6
TPR.G11323 Trifolium pratense HOM05D002419 ORTHO05D005441 1.7e-32 142.5 85 76.5
Haze_23913 Corylus avellana HOM05D002419 ORTHO05D005441 2.3e-32 142.1 81 76.5
Lj1g0007529 Lotus japonicus HOM05D002419 ORTHO05D005441 2.9e-32 141.7 85 77.6
TAR369G1020 Trochodendron aralioides HOM05D002419 ORTHO05D005441 5.0e-32 141.0 86 76.7
CAN.G553.11 Capsicum annuum HOM05D002419 ORTHO05D005441 6.6e-32 140.6 78 80.8
SEGI_39229 Sequoiadendron giganteum HOM05D002419 ORTHO05D005441 4.3e-31 137.9 85 75.3
CAN.G1839.8 Capsicum annuum HOM05D002419 ORTHO05D005441 9.5e-31 136.7 85 70.6
Pp3c13_9300 Physcomitrium patens HOM05D002419 ORTHO05D005441 1.6e-30 136.0 82 73.2
CAN.G6400.1 Capsicum annuum HOM05D002419 ORTHO05D005441 2.8e-30 135.2 77 80.5
AagrBONN_evm.TU.Sc2ySwM_344.3388 Anthoceros agrestis HOM05D002419 ORTHO05D005441 6.1e-30 134.0 85 74.1
Dinv24670 Davidia involucrata HOM05D002419 ORTHO05D005441 6.1e-30 134.0 78 79.5
AagrBONN_evm.TU.Sc2ySwM_228.4581 Anthoceros agrestis HOM05D002419 ORTHO05D005441 8.0e-30 133.7 85 72.9
Nitab4.5_0000106g0060 Nicotiana tabacum HOM05D002419 ORTHO05D005441 8.0e-30 133.7 85 71.8
CBR_g24285 Chara braunii HOM05D002419 ORTHO05D005441 1.4e-29 132.9 85 71.8
Glyma.10G187200 Glycine max HOM05D002419 ORTHO05D005441 1.4e-29 132.9 85 74.1
Peaxi162Scf00101g01011 Petunia axillaris HOM05D002419 ORTHO05D005441 3.0e-29 131.7 85 69.4
Mapoly0012s0053 Marchantia polymorpha HOM05D002419 ORTHO05D005441 5.2e-29 131.0 84 70.2
CAN.G1001.14 Capsicum annuum HOM05D002419 ORTHO05D005441 3.7e-27 124.8 85 67.1
CAN.G1001.18 Capsicum annuum HOM05D002419 ORTHO05D005441 3.7e-27 124.8 85 67.1
SMO367G1131 Selaginella moellendorffii HOM05D002419 ORTHO05D005441 1.1e-26 123.2 82 69.5
Cre02.g081550 Chlamydomonas reinhardtii HOM05D002419 ORTHO05D005441 4.1e-26 121.3 81 67.9
PGSC0003DMG400007496 Solanum tuberosum HOM05D002419 ORTHO05D005441 7.8e-25 117.1 91 62.6
PRCOL_00000283 Prasinoderma coloniale HOM05D002419 ORTHO05D005441 1.5e-23 112.8 82 63.4
SHI24546 Sapria himalayana HOM05D002419 ORTHO05D005441 1.9e-23 112.5 85 62.4
Sopen06g031710 Solanum pennellii HOM05D002419 ORTHO05D005441 2.5e-23 112.1 85 60.0
MCO01G137 Micromonas commoda HOM05D002419 ORTHO05D005441 3.6e-22 108.2 86 60.5
Aqoxy6G01924 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 3.7e-19 98.2 49 85.7
Nn1g08940 Nelumbo nucifera HOM05D002419 ORTHO05D005441 1.9e-18 95.9 47 85.1
QL08p054546 Quercus lobata HOM05D002419 ORTHO05D005441 6.6e-16 87.4 100 49.0
Peaxi162Scf00101g00114 Petunia axillaris HOM05D002419 ORTHO05D005441 1.8e-13 79.3 56 73.2
Solyc06g075310.4 Solanum lycopersicum HOM05D002419 ORTHO05D005441 5.8e-12 74.3 48 68.8
Haze_26704 Corylus avellana HOM05D002419 ORTHO05D164840 7.5e-12 73.9 89 36.0
Actinidia21172 Actinidia chinensis HOM05D002419 ORTHO05D055483 3.2e-10 68.6 35 82.9
arahy.Tifrunner.gnm1.ann1.9EY0GB Arachis hypogaea HOM05D002419 ORTHO05D005441 4.1e-10 68.2 76 51.3
vmacro14074 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 4.6e-09 64.7 48 66.7
vmacro14073 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 1.0e-08 63.5 35 82.9
unitig_736.g22419 Utricularia gibba HOM05D002419 ORTHO05D005441 1.5e-07 59.7 36 77.8


User provided reference genes

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