Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG4G1250 Aethionema arabicum HOM05D005382 ORTHO05D006795 7.5e-113 410.6 217 100.0
C06p29630 Brassica napus HOM05D005382 ORTHO05D006795 6.1e-91 337.8 217 81.6
BolC6t38128H Brassica oleracea HOM05D005382 ORTHO05D006795 1.0e-90 337.0 215 81.9
AL2G40440 Arabidopsis lyrata HOM05D005382 ORTHO05D006795 1.5e-89 333.2 218 80.3
Thhalv10019121m.g Eutrema salsugineum HOM05D005382 ORTHO05D006795 1.5e-89 333.2 221 81.0
A07p26960 Brassica napus HOM05D005382 ORTHO05D006795 4.4e-89 331.6 223 80.3
BraA07t30340Z Brassica rapa HOM05D005382 ORTHO05D006795 4.4e-89 331.6 223 80.3
BcaB02g07237 Brassica carinata HOM05D005382 ORTHO05D006795 1.3e-88 330.1 223 80.7
BcaNung04166 Brassica carinata HOM05D005382 ORTHO05D006795 6.4e-88 327.8 223 80.3
AT1G80940 Arabidopsis thaliana HOM05D005382 ORTHO05D006795 1.8e-87 326.2 218 80.7
Carub.0002s2660 Capsella rubella HOM05D005382 ORTHO05D006795 9.2e-87 323.9 215 79.5
Sp5g34800 Schrenkiella parvula HOM05D005382 ORTHO05D006795 2.0e-86 322.8 218 80.3
THA.LOC104808172 Tarenaya hassleriana HOM05D005382 ORTHO05D006795 1.5e-84 316.6 218 77.5
A07p44750 Brassica napus HOM05D005382 ORTHO05D006795 2.5e-84 315.8 227 78.9
BraA07t31983Z Brassica rapa HOM05D005382 ORTHO05D006795 3.3e-84 315.5 227 78.9
BcaB02g08711 Brassica carinata HOM05D005382 ORTHO05D006795 1.4e-82 310.1 228 78.1
C06p53570 Brassica napus HOM05D005382 ORTHO05D006795 1.2e-81 307.0 227 75.8
BcaC08g47533 Brassica carinata HOM05D005382 ORTHO05D006795 3.4e-81 305.4 229 76.4
BolC6t40373H Brassica oleracea HOM05D005382 ORTHO05D006795 3.4e-81 305.4 229 76.4
CARHR073510 Cardamine hirsuta HOM05D005382 ORTHO05D006795 1.4e-71 273.5 175 81.7
Manes.11G069200 Manihot esculenta HOM05D005382 ORTHO05D006795 1.8e-66 256.5 212 67.5
Potri.001G041900 Populus trichocarpa HOM05D005382 ORTHO05D006795 2.3e-66 256.1 193 72.5
CiPaw.01G256500 Carya illinoinensis HOM05D005382 ORTHO05D006795 8.9e-66 254.2 218 65.1
Potri.003G184925 Populus trichocarpa HOM05D005382 ORTHO05D006795 5.8e-65 251.5 193 71.5
Thecc.06G046600 Theobroma cacao HOM05D005382 ORTHO05D006795 7.6e-65 251.1 209 68.4
Manes.04G100900 Manihot esculenta HOM05D005382 ORTHO05D006795 9.9e-65 250.8 210 65.7
TWI12G1456 Tripterygium wilfordii HOM05D005382 ORTHO05D006795 9.9e-65 250.8 208 67.3
CiPaw.02G163400 Carya illinoinensis HOM05D005382 ORTHO05D006795 1.3e-64 250.4 202 67.3
Gorai.007G085500 Gossypium raimondii HOM05D005382 ORTHO05D006795 3.8e-64 248.8 205 69.8
FAN09G0036 Fragaria x ananassa HOM05D005382 ORTHO05D006795 6.4e-64 248.1 212 65.6
Glyma.08G220400 Glycine max HOM05D005382 ORTHO05D006795 1.9e-63 246.5 201 68.2
Gohir.A11G075200 Gossypium hirsutum HOM05D005382 ORTHO05D006795 1.9e-63 246.5 205 68.8
FAN05G5289 Fragaria x ananassa HOM05D005382 ORTHO05D006795 2.4e-63 246.1 206 66.0
Sabra01G0028700 Salix brachista HOM05D005382 ORTHO05D006795 2.4e-63 246.1 193 69.9
FvH4_6g28270 Fragaria vesca HOM05D005382 ORTHO05D006795 3.2e-63 245.7 206 65.5
RcHm_v2.0_Chr2g0132311 Rosa chinensis HOM05D005382 ORTHO05D006795 5.4e-63 245.0 197 67.5
Hma1.2p1_0329F.1_g127290 Hydrangea macrophylla HOM05D005382 ORTHO05D006795 1.2e-62 243.8 211 63.0
Nn8g40079 Nelumbo nucifera HOM05D005382 ORTHO05D006795 1.6e-62 243.4 198 67.2
Actinidia08935 Actinidia chinensis HOM05D005382 ORTHO05D006795 2.1e-62 243.0 215 66.0
Sabra03G0135500 Salix brachista HOM05D005382 ORTHO05D006795 2.1e-62 243.0 200 68.5
COL.COLO4_26772 Corchorus olitorius HOM05D005382 ORTHO05D006795 2.7e-62 242.7 211 65.4
TAR625G1145 Trochodendron aralioides HOM05D005382 ORTHO05D006795 7.8e-62 241.1 211 64.5
MD17G1226400 Malus domestica HOM05D005382 ORTHO05D006795 1.3e-61 240.4 194 68.0
MD09G1227600 Malus domestica HOM05D005382 ORTHO05D006795 2.3e-61 239.6 212 64.2
PGR102G0492 Punica granatum HOM05D005382 ORTHO05D006795 5.1e-61 238.4 209 62.7
Nn8g40087 Nelumbo nucifera HOM05D005382 ORTHO05D006795 1.5e-60 236.9 198 65.7
VMungo0647G2390 Vigna mungo HOM05D005382 ORTHO05D006795 1.9e-60 236.5 206 66.0
Lsat_1_v5_gn_1_30801 Lactuca sativa HOM05D005382 ORTHO05D006795 2.5e-60 236.1 204 66.2
MSTRG.22842 Avicennia marina HOM05D005382 ORTHO05D006795 3.3e-60 235.7 229 59.8
Cc04_g05300 Coffea canephora HOM05D005382 ORTHO05D006795 4.3e-60 235.3 212 63.7
Gohir.D11G079900 Gossypium hirsutum HOM05D005382 ORTHO05D006795 7.3e-60 234.6 193 69.9
Migut.I00626 Erythranthe guttata HOM05D005382 ORTHO05D006795 9.6e-60 234.2 212 62.3
QL05p036845 Quercus lobata HOM05D005382 ORTHO05D006795 9.6e-60 234.2 171 72.5
Cfa001857 Carpinus fangiana HOM05D005382 ORTHO05D006795 1.6e-59 233.4 214 62.1
FAN14G0578 Fragaria x ananassa HOM05D005382 ORTHO05D006795 1.6e-59 233.4 189 68.3
HanXRQChr04g0100021 Helianthus annuus HOM05D005382 ORTHO05D006795 1.6e-59 233.4 203 65.0
Medtr4g007700 Medicago truncatula HOM05D005382 ORTHO05D006795 2.8e-59 232.6 190 66.8
ECA232G4196 Erigeron canadensis HOM05D005382 ORTHO05D006795 4.7e-59 231.9 221 60.6
Phvul.008G253200 Phaseolus vulgaris HOM05D005382 ORTHO05D006795 4.7e-59 231.9 204 65.2
CSS0039254 Camellia sinensis var. sinensis HOM05D005382 ORTHO05D006795 6.2e-59 231.5 226 59.3
Glyma.07G021400 Glycine max HOM05D005382 ORTHO05D006795 8.1e-59 231.1 204 64.2
Rhsim08G0203100 Rhododendron simsii HOM05D005382 ORTHO05D006795 8.1e-59 231.1 219 63.9
CAN.G1008.7 Capsicum annuum HOM05D005382 ORTHO05D006795 1.1e-58 230.7 205 62.0
DCAR_021374 Daucus carota HOM05D005382 ORTHO05D006795 1.1e-58 230.7 203 61.6
Ciclev10026461m.g Citrus clementina HOM05D005382 ORTHO05D006795 1.4e-58 230.3 209 62.7
Dinv21426 Davidia involucrata HOM05D005382 ORTHO05D006795 2.4e-58 229.6 211 63.0
Lj3g0027435 Lotus japonicus HOM05D005382 ORTHO05D006795 2.4e-58 229.6 205 62.4
HanXRQChr09g0274181 Helianthus annuus HOM05D005382 ORTHO05D006795 5.2e-58 228.4 193 65.3
Lalb_Chr25g0278731 Lupinus albus HOM05D005382 ORTHO05D006795 5.2e-58 228.4 199 66.3
ECA247G2189 Erigeron canadensis HOM05D005382 ORTHO05D006795 6.9e-58 228.0 197 65.5
Nitab4.5_0002700g0060 Nicotiana tabacum HOM05D005382 ORTHO05D006795 8.9e-58 227.6 201 63.2
EL10Ac8g19398 Beta vulgaris HOM05D005382 ORTHO05D006795 1.2e-57 227.3 210 60.5
Sed0008280 Sechium edule HOM05D005382 ORTHO05D006795 2.6e-57 226.1 198 64.6
ClCG09G003490 Citrullus lanatus HOM05D005382 ORTHO05D006795 3.4e-57 225.7 213 62.4
Haze_16689 Corylus avellana HOM05D005382 ORTHO05D006795 4.4e-57 225.3 155 76.8
Nitab4.5_0004738g0090 Nicotiana tabacum HOM05D005382 ORTHO05D006795 4.4e-57 225.3 211 60.7
MSTRG.9395 Avicennia marina HOM05D005382 ORTHO05D006795 5.8e-57 224.9 201 64.7
AUR62032996 Chenopodium quinoa HOM05D005382 ORTHO05D006795 5.8e-57 224.9 218 60.6
FAN02G4537 Fragaria x ananassa HOM05D005382 ORTHO05D006795 7.6e-57 224.6 168 72.0
MBI15_g08404_MAGBIO Magnolia biondii HOM05D005382 ORTHO05D006795 7.6e-57 224.6 200 63.5
Eucgr.F03985 Eucalyptus grandis HOM05D005382 ORTHO05D006795 1.3e-56 223.8 202 65.3
Lj5A81T85 Lonicera japonica HOM05D005382 ORTHO05D006795 1.3e-56 223.8 145 77.9
SGA_v2.0_scaffold515G52664 Striga asiatica HOM05D003096 ORTHO05D003521 1.3e-56 223.8 203 62.6
Peaxi162Scf00314g01032 Petunia axillaris HOM05D005382 ORTHO05D006795 2.9e-56 222.6 215 58.1
GSVIVG01016103001 Vitis vinifera HOM05D005382 ORTHO05D006795 2.9e-56 222.6 201 65.2
MSTRG.11221 Avicennia marina HOM05D005382 ORTHO05D006795 3.8e-56 222.2 227 57.7
MELO3C023486.2 Cucumis melo HOM05D005382 ORTHO05D006795 3.8e-56 222.2 213 59.2
Prupe.3G103600 Prunus persica HOM05D005382 ORTHO05D006795 6.4e-56 221.5 149 78.5
SalBow1G1272 Salvia bowleyana HOM05D005382 ORTHO05D006795 1.1e-55 220.7 165 71.5
Solyc03g117670.4 Solanum lycopersicum HOM05D005382 ORTHO05D006795 1.4e-55 220.3 209 58.9
CDE04G1090 Ceratophyllum demersum HOM05D005382 ORTHO05D006795 2.4e-55 219.5 195 64.1
Lsat_1_v5_gn_4_85061 Lactuca sativa HOM05D005382 ORTHO05D006795 3.2e-55 219.2 211 59.7
PSO782G0145 Papaver somniferum HOM05D005382 ORTHO05D006795 3.2e-55 219.2 206 63.6
TPR.G3367 Trifolium pratense HOM05D005382 ORTHO05D006795 4.2e-55 218.8 182 66.5
CsaV3_7G031710 Cucumis sativus L. HOM05D005382 ORTHO05D006795 5.4e-55 218.4 216 58.3
Eucgr.J03130 Eucalyptus grandis HOM05D005382 ORTHO05D006795 7.1e-55 218.0 210 58.6
Sc12g0008250 Simmondsia chinensis HOM05D005382 ORTHO05D006795 7.1e-55 218.0 213 61.0
PSO063G0682 Papaver somniferum HOM05D005382 ORTHO05D006795 1.2e-54 217.2 206 63.1
TWI75G0559 Tripterygium wilfordii HOM05D005382 ORTHO05D006795 1.2e-54 217.2 213 60.6
Sopen03g036580 Solanum pennellii HOM05D005382 ORTHO05D006795 4.6e-54 215.3 211 57.3
Lalb_Chr01g0011991 Lupinus albus HOM05D005382 ORTHO05D006795 1.0e-53 214.2 198 62.6
Rhsim12G0185400 Rhododendron simsii HOM05D005382 ORTHO05D006795 2.3e-53 213.0 243 52.3
Duzib192G0805 Durio zibethinus HOM05D005382 ORTHO05D006795 3.0e-53 212.6 179 65.9
Psat7g262200 Pisum sativum HOM05D005382 ORTHO05D006795 3.9e-53 212.2 179 66.5
Duzib235G0288 Durio zibethinus HOM05D005382 ORTHO05D006795 6.6e-53 211.5 154 73.4
vmacro16842 Vaccinium macrocarpon HOM05D005382 ORTHO05D006795 6.6e-53 211.5 193 61.7
SGA_v2.0_scaffold74G24593 Striga asiatica HOM05D005382 ORTHO05D006795 1.5e-52 210.3 205 59.0
AUR62034069 Chenopodium quinoa HOM05D007611 ORTHO05D006795 2.8e-51 206.1 164 68.3
Oeu051555.1 Olea europaea HOM05D005382 ORTHO05D006795 1.1e-50 204.1 161 70.2
Oeu003125.1 Olea europaea HOM05D005382 ORTHO05D006795 1.8e-50 203.4 179 64.8
CDE07G1687 Ceratophyllum demersum HOM05D005382 ORTHO05D006795 5.8e-49 198.4 134 76.1
ATR0580G392 Amborella trichopoda HOM05D005382 ORTHO05D006795 1.7e-48 196.8 193 61.1
PGSC0003DMG400014155 Solanum tuberosum HOM05D005382 ORTHO05D006795 4.9e-48 195.3 138 71.0
HPP92_010348 Vanilla planifolia HOM05D005382 ORTHO05D006795 2.4e-47 193.0 211 55.0
arahy.Tifrunner.gnm1.ann1.HUQR60 Arachis hypogaea HOM05D005382 ORTHO05D006795 4.2e-47 192.2 204 55.9
BcaB07g33703 Brassica carinata HOM05D005382 ORTHO05D006795 4.2e-47 192.2 154 69.5
Zm00001eb257680 Zea mays HOM05D005382 ORTHO05D006795 5.4e-47 191.8 207 57.0
arahy.Tifrunner.gnm1.ann1.7IZ6IW Arachis hypogaea HOM05D005382 ORTHO05D006795 1.6e-46 190.3 204 55.4
Os02g0793900 Oryza sativa ssp. japonica HOM05D005382 ORTHO05D006795 4.6e-46 188.7 200 58.5
Mapoly0128s0009 Marchantia polymorpha HOM05D005382 ORTHO05D006795 1.8e-42 176.8 129 69.8
Cpa.g.c28380.1 Carica papaya HOM05D005382 ORTHO05D006795 2.4e-42 176.4 129 70.5
CANSAT56G2690 Cannabis sativa HOM05D005382 ORTHO05D006795 5.3e-42 175.3 164 61.0
SEGI_41275 Sequoiadendron giganteum HOM05D005382 ORTHO05D006795 5.3e-42 175.3 131 69.5
Pp3c16_25700 Physcomitrium patens HOM05D005382 ORTHO05D006795 2.2e-40 169.9 137 65.0
SMO145G0139 Selaginella moellendorffii HOM05D005382 ORTHO05D006795 3.2e-39 166.0 129 66.7
Ah.14g085670 Amaranthus hybridus HOM05D005382 ORTHO05D006795 5.5e-39 165.2 210 49.5
Pp3c25_9780 Physcomitrium patens HOM05D005382 ORTHO05D006795 5.5e-39 165.2 134 64.2
SEGI_02613 Sequoiadendron giganteum HOM05D005382 ORTHO05D006795 1.9e-31 140.2 109 68.8
Atru.chr1.2804_Atru.chr1.2805 Acer truncatum HOM05D005382 ORTHO05D006795 1.6e-30 137.1 211 46.4
Hund12559 Selenicereus undatus HOM05D005382 ORTHO05D006795 1.3e-29 134.0 151 53.0
BcaB07g33704 Brassica carinata HOM05D005382 ORTHO05D006795 5.1e-29 132.1 78 83.3
BcaB07g33705 Brassica carinata HOM05D005382 ORTHO05D006795 5.1e-29 132.1 78 83.3
CSS0015514 Camellia sinensis var. sinensis HOM05D005382 ORTHO05D006795 4.8e-27 125.6 72 88.9
Actinidia36864 Actinidia chinensis HOM05D005382 ORTHO05D006795 1.1e-26 124.4 213 42.7
unitig_22.g6275 Utricularia gibba HOM05D005382 ORTHO05D006795 3.6e-22 109.4 77 71.4
Actinidia26580 Actinidia chinensis HOM05D005382 ORTHO05D006795 1.1e-15 87.8 70 68.6
AagrBONN_evm.TU.Sc2ySwM_117.2014 Anthoceros agrestis HOM05D005382 ORTHO05D006795 1.4e-15 87.4 69 69.6
TPR.G1583 Trifolium pratense HOM05D005382 ORTHO05D006795 1.5e-09 67.4 45 73.3
CARHR073520 Cardamine hirsuta HOM05D005382 ORTHO05D006795 1.7e-08 63.9 47 68.1
Actinidia26581 Actinidia chinensis HOM05D005382 ORTHO05D054410 2.2e-08 63.5 139 36.0


User provided reference genes

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