Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG4G1200 Aethionema arabicum HOM05D006125 ORTHO05D007404 1.8e-31 139.0 66 100.0
CARHR073580 Cardamine hirsuta HOM05D006125 ORTHO05D007404 1.8e-23 112.5 62 82.3
BcaC08g47537 Brassica carinata HOM05D006125 ORTHO05D007404 8.7e-23 110.2 63 82.5
A07p44800 Brassica napus HOM05D006125 ORTHO05D007404 8.7e-23 110.2 63 82.5
C06p53620 Brassica napus HOM05D006125 ORTHO05D007404 8.7e-23 110.2 63 82.5
BolC6t40378H Brassica oleracea HOM05D006125 ORTHO05D007404 8.7e-23 110.2 63 82.5
BraA07t31987Z Brassica rapa HOM05D006125 ORTHO05D007404 1.1e-22 109.8 64 81.2
Aa31LG7G580 Aethionema arabicum HOM05D006125 ORTHO05D007404 1.5e-22 109.4 63 82.5
Thhalv10009235m.g Eutrema salsugineum HOM05D006125 ORTHO05D007404 5.7e-22 107.5 63 81.0
BcaB02g08714 Brassica carinata HOM05D006125 ORTHO05D007404 7.4e-22 107.1 63 79.4
Thhalv10019388m.g Eutrema salsugineum HOM05D006125 ORTHO05D007404 7.4e-22 107.1 62 82.3
AL1G28160 Arabidopsis lyrata HOM05D006125 ORTHO05D007404 1.6e-21 105.9 63 74.6
AT1G16000 Arabidopsis thaliana HOM05D006125 ORTHO05D007404 1.6e-21 105.9 62 75.8
Carub.0001s1580 Capsella rubella HOM05D006125 ORTHO05D007404 2.2e-21 105.5 62 75.8
THA.LOC104808176 Tarenaya hassleriana HOM05D006125 ORTHO05D007404 4.8e-21 104.4 62 77.4
AT1G80890 Arabidopsis thaliana HOM05D006125 ORTHO05D007404 6.3e-21 104.0 62 77.4
BraA07t30336Z Brassica rapa HOM05D006125 ORTHO05D007404 4.1e-20 101.3 60 76.7
AL2G40490 Arabidopsis lyrata HOM05D006125 ORTHO05D007404 1.5e-19 99.4 62 77.4
BcaC08g45345 Brassica carinata HOM05D006125 ORTHO05D007404 3.4e-19 98.2 62 75.8
C06p29590 Brassica napus HOM05D006125 ORTHO05D007404 3.4e-19 98.2 62 75.8
BolC6t38124H Brassica oleracea HOM05D006125 ORTHO05D007404 3.4e-19 98.2 62 75.8
Gohir.A06G114500 Gossypium hirsutum HOM05D006125 ORTHO05D007404 5.9e-19 97.4 62 69.4
A07p26910 Brassica napus HOM05D006125 ORTHO05D007404 7.6e-19 97.1 61 75.4
Gohir.D06G119100 Gossypium hirsutum HOM05D006125 ORTHO05D007404 7.6e-19 97.1 62 69.4
Sp5g34850 Schrenkiella parvula HOM05D006125 ORTHO05D007404 1.7e-18 95.9 48 83.3
Thecc.06G043200 Theobroma cacao HOM05D006125 ORTHO05D007404 1.7e-18 95.9 64 67.2
CARHR016510 Cardamine hirsuta HOM05D006125 ORTHO05D007404 1.1e-17 93.2 59 74.6
Actinidia25476 Actinidia chinensis HOM05D006125 ORTHO05D007404 3.2e-17 91.7 62 72.6
Ciclev10026865m.g Citrus clementina HOM05D006125 ORTHO05D007404 3.2e-17 91.7 62 71.0
Cc04_g05190 Coffea canephora HOM05D006125 ORTHO05D007404 3.2e-17 91.7 64 65.6
Cpa.g.sc10.63 Carica papaya HOM05D006125 ORTHO05D007404 5.5e-17 90.9 58 70.7
Sp1g14310 Schrenkiella parvula HOM05D006125 ORTHO05D007404 5.5e-17 90.9 56 71.4
Duzib160G0610 Durio zibethinus HOM05D006125 ORTHO05D007404 1.6e-16 89.4 66 62.1
Gorai.010G136700 Gossypium raimondii HOM05D006125 ORTHO05D007404 1.6e-16 89.4 68 61.8
Ca_06644_v3 Cicer arietinum L. HOM05D006125 ORTHO05D007404 2.1e-16 89.0 66 56.1
Lj3g0014233 Lotus japonicus HOM05D006125 ORTHO05D007404 2.1e-16 89.0 62 59.7
BcaB02g07240 Brassica carinata HOM05D005650 ORTHO05D007020 4.6e-16 87.8 63 68.3
Dinv21417 Davidia involucrata HOM05D006125 ORTHO05D007404 7.9e-16 87.0 62 66.1
Oeu009806.1 Olea europaea HOM05D006125 ORTHO05D007404 7.9e-16 87.0 55 63.6
CANSAT56G2558 Cannabis sativa HOM05D006125 ORTHO05D007404 1.4e-15 86.3 62 62.9
Dinv23278 Davidia involucrata HOM05D006125 ORTHO05D007404 1.4e-15 86.3 62 66.1
RcHm_v2.0_Chr2g0132751 Rosa chinensis HOM05D006125 ORTHO05D007404 1.4e-15 86.3 47 76.6
Nitab4.5_0002700g0200 Nicotiana tabacum HOM05D006125 ORTHO05D007404 1.8e-15 85.9 66 60.6
Zm00001eb176360 Zea mays HOM05D006125 ORTHO05D007404 2.3e-15 85.5 51 68.6
HanXRQChr05g0153751 Helianthus annuus HOM05D006125 ORTHO05D007404 3.0e-15 85.1 50 70.0
Os12g0556400 Oryza sativa ssp. japonica HOM05D006125 ORTHO05D007404 3.0e-15 85.1 51 70.6
Actinidia18251 Actinidia chinensis HOM05D006125 ORTHO05D007404 3.9e-15 84.7 62 69.4
CAN.G407.2 Capsicum annuum HOM05D006125 ORTHO05D007404 5.1e-15 84.3 66 60.6
Nitab4.5_0009867g0040 Nicotiana tabacum HOM05D006125 ORTHO05D007404 5.1e-15 84.3 66 62.1
QL07p030560 Quercus lobata HOM05D006125 ORTHO05D007404 6.7e-15 84.0 55 61.8
TPR.G3325 Trifolium pratense HOM05D006125 ORTHO05D007404 6.7e-15 84.0 63 57.1
MD09G1225600 Malus domestica HOM05D006125 ORTHO05D007404 8.8e-15 83.6 44 79.5
MD17G1224400 Malus domestica HOM05D006125 ORTHO05D007404 8.8e-15 83.6 71 59.2
Eucgr.J03118 Eucalyptus grandis HOM05D006125 ORTHO05D007404 1.1e-14 83.2 62 59.7
FAN02G1155 Fragaria x ananassa HOM05D006125 ORTHO05D007404 1.1e-14 83.2 46 76.1
Phvul.010G162500 Phaseolus vulgaris HOM05D006125 ORTHO05D007404 1.1e-14 83.2 55 61.8
PGR031G3360 Punica granatum HOM05D006125 ORTHO05D007404 1.1e-14 83.2 62 62.9
PGR037G0004 Punica granatum HOM05D006125 ORTHO05D007404 1.1e-14 83.2 62 62.9
SGA_v2.0_scaffold5G02790 Striga asiatica HOM05D006125 ORTHO05D007404 1.1e-14 83.2 57 64.9
Manes.11G068700 Manihot esculenta HOM05D006125 ORTHO05D007404 1.5e-14 82.8 64 57.8
Prupe.3G100100 Prunus persica HOM05D006125 ORTHO05D007404 1.5e-14 82.8 46 76.1
Solyc03g117580.3 Solanum lycopersicum HOM05D006125 ORTHO05D007404 1.5e-14 82.8 66 60.6
Sopen03g036490 Solanum pennellii HOM05D006125 ORTHO05D007404 1.5e-14 82.8 66 60.6
QL07p031505 Quercus lobata HOM05D006125 ORTHO05D007404 1.9e-14 82.4 55 60.0
Prupe.2G074900 Prunus persica HOM05D006125 ORTHO05D007404 2.5e-14 82.0 62 59.7
FAN05G4250 Fragaria x ananassa HOM05D006125 ORTHO05D007404 3.3e-14 81.6 46 73.9
Atru.chr1.2788 Acer truncatum HOM05D006125 ORTHO05D007404 4.3e-14 81.3 44 79.5
ATR0580G075 Amborella trichopoda HOM05D006125 ORTHO05D007404 5.7e-14 80.9 52 67.3
AUR62034053 Chenopodium quinoa HOM05D006125 ORTHO05D007404 5.7e-14 80.9 54 63.0
SalBow7G4057 Salvia bowleyana HOM05D006125 ORTHO05D007404 5.7e-14 80.9 47 72.3
AUR62040628 Chenopodium quinoa HOM05D006125 ORTHO05D007404 7.4e-14 80.5 54 63.0
MELO3C023472.2 Cucumis melo HOM05D006125 ORTHO05D007404 7.4e-14 80.5 62 59.7
FvH4_6g28500 Fragaria vesca HOM05D006125 ORTHO05D007404 7.4e-14 80.5 56 60.7
PGSC0003DMG400014151 Solanum tuberosum HOM05D006125 ORTHO05D007404 7.4e-14 80.5 66 59.1
FAN14G2502 Fragaria x ananassa HOM05D006125 ORTHO05D007404 9.7e-14 80.1 54 63.0
CDE03G0106 Ceratophyllum demersum HOM05D006125 ORTHO05D007404 1.3e-13 79.7 55 63.6
TPR.G29449 Trifolium pratense HOM05D006125 ORTHO05D007404 1.3e-13 79.7 63 57.1
CSS0032300 Camellia sinensis var. sinensis HOM05D006125 ORTHO05D007404 1.7e-13 79.3 67 58.2
CiPaw.09G167300 Carya illinoinensis HOM05D006125 ORTHO05D007404 2.2e-13 79.0 55 63.6
COL.COLO4_26743 Corchorus olitorius HOM05D006125 ORTHO05D007404 2.2e-13 79.0 63 57.1
Hma1.2p1_0329F.1_g127170 Hydrangea macrophylla HOM05D006125 ORTHO05D007404 2.2e-13 79.0 63 54.0
TAR383G0490 Trochodendron aralioides HOM05D006125 ORTHO05D007404 2.2e-13 79.0 79 50.6
CDE06G2663 Ceratophyllum demersum HOM05D006125 ORTHO05D007404 3.7e-13 78.2 46 67.4
Os08g0272000 Oryza sativa ssp. japonica HOM05D006125 ORTHO05D007404 4.8e-13 77.8 48 64.6
Sed0014955 Sechium edule HOM05D006125 ORTHO05D007404 4.8e-13 77.8 54 61.1
Sc12g0007910 Simmondsia chinensis HOM05D006125 ORTHO05D007404 4.8e-13 77.8 63 54.0
unitig_62.g23831 Utricularia gibba HOM05D006125 ORTHO05D007404 4.8e-13 77.8 63 55.6
ECA246G3825 Erigeron canadensis HOM05D006125 ORTHO05D007404 6.3e-13 77.4 44 72.7
ClCG09G003380 Citrullus lanatus HOM05D006125 ORTHO05D007404 8.2e-13 77.0 58 60.3
arahy.Tifrunner.gnm1.ann1.CEK6A4 Arachis hypogaea HOM05D006125 ORTHO05D007404 1.1e-12 76.6 56 55.4
arahy.Tifrunner.gnm1.ann1.P1DY4U Arachis hypogaea HOM05D006125 ORTHO05D007404 1.1e-12 76.6 56 55.4
Rhsim08G0204300 Rhododendron simsii HOM05D006125 ORTHO05D007404 1.1e-12 76.6 54 63.0
Duzib235G1153 Durio zibethinus HOM05D006125 ORTHO05D007404 1.4e-12 76.3 43 69.8
Medtr4g007290 Medicago truncatula HOM05D006125 ORTHO05D007404 1.4e-12 76.3 62 54.8
Potri.001G043300 Populus trichocarpa HOM05D006125 ORTHO05D007404 1.4e-12 76.3 62 53.2
EL10Ac8g19423 Beta vulgaris HOM05D006125 ORTHO05D007404 2.4e-12 75.5 56 58.9
Glyma.07G021900 Glycine max HOM05D006125 ORTHO05D007404 2.4e-12 75.5 62 50.0
Psat7g263200 Pisum sativum HOM05D006125 ORTHO05D007404 2.4e-12 75.5 62 56.5
Aqoxy7G03387 Aquilegia oxysepala HOM05D006125 ORTHO05D007404 4.1e-12 74.7 56 62.5
DCAR_021146 Daucus carota HOM05D006125 ORTHO05D007404 4.1e-12 74.7 40 77.5
Migut.I00687 Erythranthe guttata HOM05D006125 ORTHO05D007404 4.1e-12 74.7 67 53.7
BcaB05g25217 Brassica carinata HOM05D006125 ORTHO05D007404 6.9e-12 73.9 56 69.6
Glyma.08G219900 Glycine max HOM05D006125 ORTHO05D007404 6.9e-12 73.9 46 56.5
HanXRQChr08g0219721 Helianthus annuus HOM05D006125 ORTHO05D007404 6.9e-12 73.9 39 76.9
TWI12G0957 Tripterygium wilfordii HOM05D006125 ORTHO05D007404 9.1e-12 73.6 62 53.2
HPP92_003757 Vanilla planifolia HOM05D006125 ORTHO05D007404 9.1e-12 73.6 53 58.5
BolC2t09694H Brassica oleracea HOM05D006125 ORTHO05D007404 3.4e-11 71.6 44 65.9
CsaV3_7G031850 Cucumis sativus L. HOM05D006125 ORTHO05D007404 3.4e-11 71.6 58 56.9
Manes.04G101402 Manihot esculenta HOM05D006125 ORTHO05D007404 1.0e-10 70.1 37 75.7
Sed0010339 Sechium edule HOM05D006125 ORTHO05D007404 1.3e-10 69.7 57 49.1
Lalb_Chr04g0264571 Lupinus albus HOM05D006125 ORTHO05D007404 2.9e-10 68.6 47 55.3
Potri.003G183501 Populus trichocarpa HOM05D006125 ORTHO05D007404 2.9e-10 68.6 62 51.6
QL04p040226 Quercus lobata HOM05D006125 ORTHO05D007404 5.0e-10 67.8 56 51.8
PSO782G1324 Papaver somniferum HOM05D006125 ORTHO05D007404 6.5e-10 67.4 55 58.2
MBI14_g09098_MAGBIO Magnolia biondii HOM05D006125 ORTHO05D007404 8.5e-10 67.0 63 50.8
SHI11295 Sapria himalayana HOM05D000002 ORTHO05D000001 8.5e-10 67.0 43 58.1
BNapus_Darmor_BZH_scaffold_293p00030 Brassica napus HOM05D006125 ORTHO05D007404 1.1e-09 66.6 43 81.4
Peaxi162Scf00553g00539 Petunia axillaris HOM05D006125 ORTHO05D007404 1.1e-09 66.6 62 59.7
SalBow6G4114 Salvia bowleyana HOM05D006125 ORTHO05D007404 1.9e-09 65.9 55 60.0
Haze_20423 Corylus avellana HOM05D006125 ORTHO05D007404 3.2e-09 65.1 58 44.8
BolC6t38413H Brassica oleracea HOM05D006125 ORTHO05D007404 4.2e-09 64.7 47 72.3
Cfa017829 Carpinus fangiana HOM05D006125 ORTHO05D007404 7.2e-09 63.9 58 46.6
GSVIVG01015983001 Vitis vinifera HOM05D006125 ORTHO05D007404 7.2e-09 63.9 39 64.1
vmacro19061 Vaccinium macrocarpon HOM05D006125 ORTHO05D007404 9.4e-09 63.5 39 69.2
Sabra03G0134100 Salix brachista HOM05D006125 ORTHO05D007404 2.7e-08 62.0 57 49.1
SEGI_23088 Sequoiadendron giganteum HOM05D006125 ORTHO05D007404 2.7e-08 62.0 48 54.2
Sabra01G0029800 Salix brachista HOM05D006125 ORTHO05D007404 3.9e-07 58.2 49 49.0
Potri.004G051201 Populus trichocarpa HOM05D006125 ORTHO05D007404 2.0e-06 55.8 37 54.1


User provided reference genes

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