Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG4G11880 Aethionema arabicum HOM05D006333 ORTHO05D007799 1.2e-77 293.1 149 100.0
Aa31LG7G2140 Aethionema arabicum HOM05D006333 ORTHO05D007799 4.0e-17 92.0 57 84.2
Aa31sc1048G10 Aethionema arabicum HOM05D011547 ORTHO05D000016 9.0e-17 90.9 51 90.2
Aa31sc968G10 Aethionema arabicum HOM05D006333 ORTHO05D007799 1.5e-16 90.1 63 76.2
C05p15710 Brassica napus HOM05D006333 ORTHO05D007799 4.9e-15 85.1 57 77.2
BraA06t24479Z Brassica rapa HOM05D006333 ORTHO05D007799 4.9e-15 85.1 57 77.2
BcaC05g25649 Brassica carinata HOM05D006333 ORTHO05D007799 6.4e-15 84.7 57 77.2
BolC5t30276H Brassica oleracea HOM05D006333 ORTHO05D007799 1.4e-14 83.6 57 75.4
A06p13260 Brassica napus HOM05D006333 ORTHO05D007799 4.2e-14 82.0 57 73.7
Sp1g15450 Schrenkiella parvula HOM05D006333 ORTHO05D007799 4.2e-14 82.0 56 75.0
Thhalv10008690m.g Eutrema salsugineum HOM05D006333 ORTHO05D007799 5.4e-14 81.6 57 77.2
Aa31LG3G6330 Aethionema arabicum HOM05D001086 ORTHO05D001112 9.3e-14 80.9 49 85.7
CARHR017920 Cardamine hirsuta HOM05D006333 ORTHO05D007799 1.2e-13 80.5 57 77.2
Aa31sc137G40 Aethionema arabicum HOM05D011547 ORTHO05D059605 3.5e-13 79.0 41 95.1
AT1G17330 Arabidopsis thaliana HOM05D006333 ORTHO05D007799 3.0e-12 75.9 54 72.2
BcaB07g34033 Brassica carinata HOM05D006333 ORTHO05D007799 5.1e-12 75.1 57 73.7
AL1G29580 Arabidopsis lyrata HOM05D006333 ORTHO05D007799 6.7e-12 74.7 54 72.2
Manes.04G057700 Manihot esculenta HOM05D006333 ORTHO05D007799 6.7e-12 74.7 57 66.7
Aa31sc337G30 Aethionema arabicum HOM05D011547 ORTHO05D000016 8.7e-12 74.3 41 92.7
Carub.0001s1708 Capsella rubella HOM05D006333 ORTHO05D007799 8.7e-12 74.3 52 73.1
Aa31sc444G10 Aethionema arabicum HOM05D011547 ORTHO05D000016 1.5e-11 73.6 41 87.8
Aa31sc76G10 Aethionema arabicum HOM05D011547 ORTHO05D058836 1.5e-11 73.6 41 87.8
Ciclev10032700m.g Citrus clementina HOM05D006333 ORTHO05D007799 1.5e-11 73.6 50 72.0
Gohir.A13G060400 Gossypium hirsutum HOM05D006333 ORTHO05D007799 1.9e-11 73.2 57 64.9
Gorai.013G070000 Gossypium raimondii HOM05D006333 ORTHO05D007799 2.5e-11 72.8 57 64.9
Cpa.g.sc0.136 Carica papaya HOM05D006333 ORTHO05D007799 3.3e-11 72.4 57 66.7
Aa31LG6G9800 Aethionema arabicum HOM05D011547 ORTHO05D000016 4.3e-11 72.0 41 85.4
Aa31sc1160G10 Aethionema arabicum HOM05D011547 ORTHO05D000016 7.4e-11 71.2 41 85.4
arahy.Tifrunner.gnm1.ann1.A0JP3J Arachis hypogaea HOM05D006333 ORTHO05D007799 7.4e-11 71.2 57 64.9
arahy.Tifrunner.gnm1.ann1.N7V6FU Arachis hypogaea HOM05D006333 ORTHO05D007799 7.4e-11 71.2 57 64.9
Duzib132G1109 Durio zibethinus HOM05D006333 ORTHO05D007799 7.4e-11 71.2 57 63.2
Nitab4.5_0008825g0020 Nicotiana tabacum HOM05D006333 ORTHO05D007799 7.4e-11 71.2 57 66.7
CiPaw.05G169800 Carya illinoinensis HOM05D006333 ORTHO05D007799 9.6e-11 70.9 57 63.2
Gohir.D13G061500 Gossypium hirsutum HOM05D006333 ORTHO05D007799 9.6e-11 70.9 57 63.2
Thecc.02G159600 Theobroma cacao HOM05D006333 ORTHO05D007799 9.6e-11 70.9 57 61.4
Aa31sc171G10 Aethionema arabicum HOM05D011547 ORTHO05D000016 1.3e-10 70.5 41 85.4
Dinv17616 Davidia involucrata HOM05D006333 ORTHO05D007799 1.3e-10 70.5 56 67.9
Aa31sc286G50 Aethionema arabicum HOM05D006333 ORTHO05D007799 1.6e-10 70.1 46 80.4
MD13G1004800 Malus domestica HOM05D006333 ORTHO05D007799 1.6e-10 70.1 50 68.0
Phvul.011G028900 Phaseolus vulgaris HOM05D006333 ORTHO05D007799 2.1e-10 69.7 53 66.0
Sed0022709 Sechium edule HOM05D006333 ORTHO05D007799 2.1e-10 69.7 57 61.4
THA.LOC104808350 Tarenaya hassleriana HOM05D006333 ORTHO05D007799 2.1e-10 69.7 54 66.7
Glyma.12G026000 Glycine max HOM05D006333 ORTHO05D007799 2.8e-10 69.3 57 63.2
MELO3C024016.2 Cucumis melo HOM05D006333 ORTHO05D007799 3.7e-10 68.9 57 63.2
Aa31sc899G10 Aethionema arabicum HOM05D011547 ORTHO05D000016 4.8e-10 68.6 41 82.9
Potri.007G072000 Populus trichocarpa HOM05D006333 ORTHO05D007799 4.8e-10 68.6 53 67.9
TWI53G1586 Tripterygium wilfordii HOM05D006333 ORTHO05D007799 4.8e-10 68.6 57 59.6
COL.COLO4_08588 Corchorus olitorius HOM05D006333 ORTHO05D007799 6.2e-10 68.2 57 59.6
Medtr4g023480 Medicago truncatula HOM05D006333 ORTHO05D007799 6.2e-10 68.2 50 70.0
Cfa008751 Carpinus fangiana HOM05D006333 ORTHO05D007799 8.1e-10 67.8 57 59.6
Ca_19901_v3 Cicer arietinum L. HOM05D006333 ORTHO05D007799 1.1e-09 67.4 52 67.3
Sabra07G0060700 Salix brachista HOM05D006333 ORTHO05D007799 1.1e-09 67.4 53 66.0
ClCG10G012010 Citrullus lanatus HOM05D006333 ORTHO05D007799 1.4e-09 67.0 57 61.4
Hma1.2p1_0044F.1_g026090 Hydrangea macrophylla HOM05D006333 ORTHO05D007799 1.4e-09 67.0 50 66.0
RcHm_v2.0_Chr4g0446761 Rosa chinensis HOM05D006333 ORTHO05D007799 1.8e-09 66.6 50 64.0
DCAR_008496 Daucus carota HOM05D003141 ORTHO05D003633 2.4e-09 66.2 52 63.5
Lj3A849G43 Lonicera japonica HOM05D006333 ORTHO05D007799 2.4e-09 66.2 57 59.6
Rhsim09G0071800 Rhododendron simsii HOM05D006333 ORTHO05D007799 2.4e-09 66.2 57 61.4
VMungo1127G0165 Vigna mungo HOM05D006333 ORTHO05D007799 2.4e-09 66.2 53 64.2
Atru.chr11.1164 Acer truncatum HOM05D006333 ORTHO05D007799 3.1e-09 65.9 52 59.6
Hund24376 Selenicereus undatus HOM05D006333 ORTHO05D007799 3.1e-09 65.9 49 69.4
FAN07G1904 Fragaria x ananassa HOM05D006333 ORTHO05D007799 4.0e-09 65.5 50 64.0
FAN17G3063 Fragaria x ananassa HOM05D006333 ORTHO05D007799 4.0e-09 65.5 50 64.0
FAN12G1853 Fragaria x ananassa HOM05D006333 ORTHO05D007799 5.3e-09 65.1 58 56.9
Psat7g233400 Pisum sativum HOM05D006333 ORTHO05D007799 5.3e-09 65.1 50 68.0
Actinidia11766 Actinidia chinensis HOM05D006333 ORTHO05D007799 6.9e-09 64.7 50 66.0
FvH4_4g36970 Fragaria vesca HOM05D006333 ORTHO05D007799 9.0e-09 64.3 50 64.0
Atru.chr11.2675 Acer truncatum HOM05D006333 ORTHO05D007799 1.2e-08 63.9 49 61.2
Atru.chr11.2676 Acer truncatum HOM05D006333 ORTHO05D007799 1.2e-08 63.9 49 61.2
Haze_11767 Corylus avellana HOM05D006333 ORTHO05D007799 1.2e-08 63.9 57 59.6
TAR629G1621 Trochodendron aralioides HOM05D006333 ORTHO05D007799 1.5e-08 63.5 57 59.6
Aqoxy3G04253 Aquilegia oxysepala HOM05D006333 ORTHO05D007799 3.4e-08 62.4 54 57.4
CANSAT56G2519 Cannabis sativa HOM05D006333 ORTHO05D007799 3.4e-08 62.4 57 54.4
Lj3g0001632 Lotus japonicus HOM05D006333 ORTHO05D007799 4.5e-08 62.0 50 64.0
Solyc02g014720.4 Solanum lycopersicum HOM05D006333 ORTHO05D007799 4.5e-08 62.0 52 63.5
CSS0049289 Camellia sinensis var. sinensis HOM05D006333 ORTHO05D007799 5.8e-08 61.6 57 57.9
CSS0015547 Camellia sinensis var. sinensis HOM05D006333 ORTHO05D007799 7.6e-08 61.2 57 57.9
Oeu044913.1 Olea europaea HOM05D006333 ORTHO05D007799 7.6e-08 61.2 57 57.9
MSTRG.11948 Avicennia marina HOM05D006333 ORTHO05D007799 1.3e-07 60.5 57 56.1
Cc11_g02420 Coffea canephora HOM05D006333 ORTHO05D007799 1.3e-07 60.5 50 60.0
PSO782G2700 Papaver somniferum HOM05D006333 ORTHO05D007799 1.3e-07 60.5 53 62.3
Sc17g0000100 Simmondsia chinensis HOM05D006333 ORTHO05D007799 1.3e-07 60.5 57 56.1
HanXRQChr12g0366301 Helianthus annuus HOM05D006333 ORTHO05D007799 2.2e-07 59.7 57 57.9
Nn5g28807 Nelumbo nucifera HOM05D006333 ORTHO05D007799 2.9e-07 59.3 52 57.7
SalBow1G0042 Salvia bowleyana HOM05D006333 ORTHO05D007799 2.9e-07 59.3 57 56.1
CsaV3_3G031750 Cucumis sativus L. HOM05D006333 ORTHO05D007799 3.8e-07 58.9 57 57.9
Migut.A00709 Erythranthe guttata HOM05D006333 ORTHO05D007799 3.8e-07 58.9 54 57.4
Prupe.1G347700 Prunus persica HOM05D006333 ORTHO05D007799 3.8e-07 58.9 53 56.6
Aa31sc566G10 Aethionema arabicum HOM05D011547 ORTHO05D000016 4.9e-07 58.5 41 75.6
PGR044G2499 Punica granatum HOM05D006333 ORTHO05D007799 4.9e-07 58.5 57 57.9
SGA_v2.0_scaffold146G36264 Striga asiatica HOM05D006333 ORTHO05D007799 4.9e-07 58.5 56 55.4
Sopen02g004090 Solanum pennellii HOM05D006333 ORTHO05D007799 6.4e-07 58.2 52 59.6
CAN.G1011.5 Capsicum annuum HOM05D006333 ORTHO05D007799 8.4e-07 57.8 52 57.7
Lsat_1_v5_gn_8_33120 Lactuca sativa HOM05D006333 ORTHO05D007799 1.4e-06 57.0 59 57.6
AUR62017701 Chenopodium quinoa HOM05D006333 ORTHO05D007799 2.4e-06 56.2 57 49.1
Eucgr.J00869 Eucalyptus grandis HOM05D006333 ORTHO05D007799 2.4e-06 56.2 49 59.2
Nitab4.5_0003092g0070 Nicotiana tabacum HOM05D006333 ORTHO05D007799 2.4e-06 56.2 45 64.4
GSVIVG01012055001 Vitis vinifera HOM05D006333 ORTHO05D007799 2.4e-06 56.2 40 70.0
MBI06_g42293_MAGBIO Magnolia biondii HOM05D006333 ORTHO05D007799 3.2e-06 55.8 50 56.0
Prupe.1G347900 Prunus persica HOM05D006333 ORTHO05D007799 3.2e-06 55.8 53 54.7
PSO063G3232 Papaver somniferum HOM05D006333 ORTHO05D007799 4.2e-06 55.5 40 70.0
EL10Ac9g22952 Beta vulgaris HOM05D006333 ORTHO05D007799 5.5e-06 55.1 52 55.8
MBI06_g42292_MAGBIO Magnolia biondii HOM05D006333 ORTHO05D007799 5.5e-06 55.1 60 50.0
Os10g0486000 Oryza sativa ssp. japonica HOM05D006333 ORTHO05D007799 7.1e-06 54.7 90 43.3


User provided reference genes

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