Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG4G11790 Aethionema arabicum HOM05D005042 ORTHO05D006080 5.2e-310 1067.0 588 100.0
AT1G69060 Arabidopsis thaliana HOM05D005042 ORTHO05D006080 3.0e-148 529.6 635 58.0
THA.LOC104821992 Tarenaya hassleriana HOM05D005042 ORTHO05D006080 7.6e-136 488.4 596 56.4
AL2G28110 Arabidopsis lyrata HOM05D005042 ORTHO05D006080 2.9e-135 486.5 633 53.7
Thhalv10018302m.g Eutrema salsugineum HOM05D005042 ORTHO05D006080 9.3e-126 454.9 652 51.4
Sp5g24160 Schrenkiella parvula HOM05D005042 ORTHO05D006080 2.7e-125 453.4 578 53.6
Carub.0002s1568 Capsella rubella HOM05D005042 ORTHO05D006080 8.5e-119 431.8 593 49.7
C06p40780 Brassica napus HOM05D005042 ORTHO05D006080 5.9e-96 355.9 683 44.5
BolC6t39355H Brassica oleracea HOM05D005042 ORTHO05D006080 4.2e-94 349.7 671 45.0
A07p35450 Brassica napus HOM05D005042 ORTHO05D006080 3.6e-93 346.7 669 45.0
BraA07t31136Z Brassica rapa HOM05D005042 ORTHO05D006080 1.1e-89 335.1 652 44.5
CiPaw.05G122400 Carya illinoinensis HOM05D005042 ORTHO05D006080 4.6e-56 223.4 712 31.7
Manes.01G025000 Manihot esculenta HOM05D005042 ORTHO05D006080 3.0e-55 220.7 663 33.6
Potri.010G139100 Populus trichocarpa HOM05D005042 ORTHO05D006080 9.5e-54 215.7 743 31.0
Cfa008851 Carpinus fangiana HOM05D005042 ORTHO05D006080 1.6e-53 214.9 729 30.9
Potri.008G109100 Populus trichocarpa HOM05D005042 ORTHO05D006080 4.7e-53 213.4 688 32.6
Potri.T155180 Populus trichocarpa HOM05D005042 ORTHO05D006080 4.7e-53 213.4 688 32.6
Prupe.1G292900 Prunus persica HOM05D005042 ORTHO05D006080 5.8e-51 206.5 664 32.2
CiPaw.06G094600 Carya illinoinensis HOM05D005042 ORTHO05D006080 1.7e-50 204.9 662 32.2
Dinv34024 Davidia involucrata HOM05D005042 ORTHO05D006080 6.4e-50 203.0 715 30.3
Cpa.g.sc1.165 Carica papaya HOM05D005042 ORTHO05D006080 1.9e-49 201.4 670 33.6
Haze_11871 Corylus avellana HOM05D005042 ORTHO05D006080 1.9e-49 201.4 744 28.5
EL10Ac6g14684 Beta vulgaris HOM05D005042 ORTHO05D006080 5.4e-49 199.9 605 33.7
Actinidia07770 Actinidia chinensis HOM05D005042 ORTHO05D006080 2.1e-48 198.0 691 31.4
Cc11_g11610 Coffea canephora HOM05D005042 ORTHO05D006080 2.1e-48 198.0 633 32.7
Rhsim12G0071400 Rhododendron simsii HOM05D005042 ORTHO05D006080 1.3e-47 195.3 626 33.1
vmacro01299 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 2.3e-47 194.5 618 33.0
Thecc.02G323700 Theobroma cacao HOM05D005042 ORTHO05D006080 8.6e-47 192.6 647 32.1
Oeu024162.6 Olea europaea HOM05D005042 ORTHO05D006080 2.5e-46 191.0 642 30.8
TWI31G0262 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 3.3e-46 190.7 692 28.8
Migut.E00252 Erythranthe guttata HOM05D005042 ORTHO05D006080 9.6e-46 189.1 599 30.6
Lj3A1027T86 Lonicera japonica HOM05D005042 ORTHO05D006080 2.4e-44 184.5 669 30.6
Hund25158 Selenicereus undatus HOM05D005042 ORTHO05D006080 3.1e-44 184.1 594 33.3
MD13G1056900 Malus domestica HOM05D005042 ORTHO05D006080 8.9e-44 182.6 656 33.5
TWI79G1206 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 1.5e-43 181.8 671 30.0
Eucgr.G02425 Eucalyptus grandis HOM05D005042 ORTHO05D006080 2.0e-43 181.4 589 31.9
Duzib251G0840 Durio zibethinus HOM05D005042 ORTHO05D006080 3.4e-43 180.6 639 32.9
MD16G1056300 Malus domestica HOM05D005042 ORTHO05D006080 2.2e-42 177.9 660 32.6
Gohir.A05G306900 Gossypium hirsutum HOM05D005042 ORTHO05D006080 1.9e-41 174.9 628 32.0
Gorai.009G327100 Gossypium raimondii HOM05D005042 ORTHO05D006080 2.4e-41 174.5 620 31.8
CSS0000751 Camellia sinensis var. sinensis HOM05D005042 ORTHO05D006080 3.2e-41 174.1 737 28.9
TAR371G1247 Trochodendron aralioides HOM05D005042 ORTHO05D006080 3.2e-41 174.1 210 48.6
Lalb_Chr17g0341431 Lupinus albus HOM05D005042 ORTHO05D006080 9.3e-41 172.6 620 32.4
Phvul.003G038600 Phaseolus vulgaris HOM05D005042 ORTHO05D006080 9.3e-41 172.6 620 32.3
Gohir.D05G307200 Gossypium hirsutum HOM05D005042 ORTHO05D006080 2.1e-40 171.4 620 31.6
CANSAT11G1456 Cannabis sativa HOM05D005042 ORTHO05D006080 1.3e-39 168.7 689 28.4
TAR726G0003 Trochodendron aralioides HOM05D005042 ORTHO05D006080 2.3e-39 167.9 696 28.9
AUR62007879 Chenopodium quinoa HOM05D005042 ORTHO05D006080 3.9e-39 167.2 505 32.9
Rhsim09G0122700 Rhododendron simsii HOM05D005042 ORTHO05D006080 5.6e-38 163.3 754 30.1
AUR62003064 Chenopodium quinoa HOM05D005042 ORTHO05D006080 1.3e-37 162.2 541 32.0
Glyma.02G122200 Glycine max HOM05D005042 ORTHO05D006080 4.8e-37 160.2 597 31.2
SGA_v2.0_scaffold287G47187 Striga asiatica HOM05D005042 ORTHO05D006080 1.1e-36 159.1 656 29.9
CsaV3_6G033840 Cucumis sativus L. HOM05D005042 ORTHO05D006080 5.3e-36 156.8 161 56.5
MELO3C011406.2 Cucumis melo HOM05D005042 ORTHO05D006080 9.0e-36 156.0 166 54.8
Oeu057419.1 Olea europaea HOM05D005042 ORTHO05D006080 1.5e-35 155.2 682 27.0
Ciclev10030834m.g Citrus clementina HOM05D005042 ORTHO05D006080 2.0e-35 154.8 711 30.1
CARHR061940 Cardamine hirsuta HOM05D005042 ORTHO05D006080 2.6e-35 154.5 168 61.3
HanXRQChr17g0570091 Helianthus annuus HOM05D005042 ORTHO05D006080 3.4e-35 154.1 230 44.8
Sabra08G0082800 Salix brachista HOM05D005042 ORTHO05D006080 9.9e-35 152.5 721 28.2
COL.COLO4_27818 Corchorus olitorius HOM05D005042 ORTHO05D006080 1.3e-34 152.1 627 29.5
Atru.chr11.1578 Acer truncatum HOM05D005042 ORTHO05D006080 2.9e-34 151.0 742 28.2
CDE10G0431 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 3.8e-34 150.6 573 29.8
PSO478G2238 Papaver somniferum HOM05D005042 ORTHO05D006080 3.8e-34 150.6 162 52.5
COL.COLO4_27836 Corchorus olitorius HOM05D005042 ORTHO05D006080 1.1e-33 149.1 173 53.2
Nn4g23527 Nelumbo nucifera HOM05D005042 ORTHO05D006080 1.1e-33 149.1 692 27.3
VMungo1215G3453 Vigna mungo HOM05D005042 ORTHO05D006080 1.1e-33 149.1 118 66.9
Lsat_1_v5_gn_3_106381 Lactuca sativa HOM05D005042 ORTHO05D006080 1.4e-33 148.7 161 54.7
vmacro10479 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 1.4e-33 148.7 742 27.6
Medtr5g047140 Medicago truncatula HOM05D005042 ORTHO05D006080 5.4e-33 146.7 166 61.4
unitig_62.g23700 Utricularia gibba HOM05D005042 ORTHO05D006080 3.5e-32 144.1 165 50.9
MBI16_g07040_MAGBIO Magnolia biondii HOM05D005042 ORTHO05D006080 7.9e-32 142.9 632 30.4
Oeu021807.1 Olea europaea HOM05D005042 ORTHO05D006080 7.9e-32 142.9 597 28.0
arahy.Tifrunner.gnm1.ann1.L0BNS4 Arachis hypogaea HOM05D005042 ORTHO05D006080 1.0e-31 142.5 114 67.5
Oeu055079.1 Olea europaea HOM05D005042 ORTHO05D006080 1.3e-31 142.1 200 46.0
FAN22G1919 Fragaria x ananassa HOM05D005042 ORTHO05D006080 3.9e-31 140.6 657 30.1
CAN.G1021.3 Capsicum annuum HOM05D005042 ORTHO05D006080 5.1e-31 140.2 619 27.6
Lj2g0019338 Lotus japonicus HOM05D005042 ORTHO05D006080 8.7e-31 139.4 165 52.1
Solyc05g011950.3 Solanum lycopersicum HOM05D005042 ORTHO05D006080 8.7e-31 139.4 162 53.1
PGSC0003DMG400028304 Solanum tuberosum HOM05D005042 ORTHO05D006080 1.5e-30 138.7 612 28.6
ECA246G3902 Erigeron canadensis HOM05D005042 ORTHO05D006080 1.9e-30 138.3 160 52.5
Glyma.01G064400 Glycine max HOM05D005042 ORTHO05D006080 3.3e-30 137.5 610 31.3
ClCG08G010560 Citrullus lanatus HOM05D005042 ORTHO05D006080 5.6e-30 136.7 203 42.9
Sopen05g006670 Solanum pennellii HOM05D005042 ORTHO05D006080 9.6e-30 136.0 611 28.2
Peaxi162Scf00188g01341 Petunia axillaris HOM05D005042 ORTHO05D006080 1.6e-29 135.2 600 30.2
Nitab4.5_0012072g0010 Nicotiana tabacum HOM05D005042 ORTHO05D006080 6.2e-29 133.3 687 27.2
CAN.G1021.18 Capsicum annuum HOM05D005042 ORTHO05D006080 1.1e-28 132.5 115 61.7
FAN17G2893 Fragaria x ananassa HOM05D005042 ORTHO05D006080 1.8e-28 131.7 659 30.0
Solyc05g011930.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 1.8e-28 131.7 609 28.2
GSVIVG01012257001 Vitis vinifera HOM05D005042 ORTHO05D006080 1.8e-28 131.7 608 30.1
PSO017G3437 Papaver somniferum HOM05D005042 ORTHO05D006080 2.4e-28 131.3 576 29.5
PSO063G2731 Papaver somniferum HOM05D005042 ORTHO05D006080 4.0e-28 130.6 621 31.1
Pp3c1_680 Physcomitrium patens HOM05D005042 ORTHO05D006080 4.0e-28 130.6 500 27.2
Sabra10G0107300 Salix brachista HOM05D005042 ORTHO05D006080 5.3e-28 130.2 663 27.1
PGR119G2532 Punica granatum HOM05D005042 ORTHO05D006080 6.9e-28 129.8 659 27.6
SEGI_40784 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 6.9e-28 129.8 582 28.5
HPP92_000883 Vanilla planifolia HOM05D005042 ORTHO05D006080 2.6e-27 127.9 647 28.0
RcHm_v2.0_Chr4g0437421 Rosa chinensis HOM05D005042 ORTHO05D006080 3.4e-27 127.5 681 29.8
Nitab4.5_0000027g0180 Nicotiana tabacum HOM05D005042 ORTHO05D006080 7.6e-27 126.3 672 26.5
QL05p008217 Quercus lobata HOM05D005042 ORTHO05D006080 7.6e-27 126.3 173 49.1
FvH4_4g29350 Fragaria vesca HOM05D005042 ORTHO05D006080 1.7e-26 125.2 633 31.9
CAN.G1021.19 Capsicum annuum HOM05D005042 ORTHO05D006080 2.2e-26 124.8 107 61.7
PSO782G3512 Papaver somniferum HOM05D005042 ORTHO05D006080 6.4e-26 123.2 648 29.8
arahy.Tifrunner.gnm1.ann1.U4ZHW1 Arachis hypogaea HOM05D005042 ORTHO05D006080 1.1e-25 122.5 620 31.3
Psat2g093520 Pisum sativum HOM05D005042 ORTHO05D006080 1.9e-25 121.7 165 46.1
AagrBONN_evm.TU.Sc2ySwM_117.2775 Anthoceros agrestis HOM05D005042 ORTHO05D006080 2.4e-25 121.3 160 43.8
ATR0827G068 Amborella trichopoda HOM05D005042 ORTHO05D006080 3.2e-25 120.9 590 28.0
Ca_05058_v3 Cicer arietinum L. HOM05D005042 ORTHO05D006080 4.2e-25 120.6 177 46.9
TPR.G34179 Trifolium pratense HOM05D005042 ORTHO05D006080 4.2e-25 120.6 168 47.6
FAN12G1549 Fragaria x ananassa HOM05D005042 ORTHO05D006080 5.5e-25 120.2 640 31.6
FAN07G1705 Fragaria x ananassa HOM05D005042 ORTHO05D006080 9.3e-25 119.4 655 28.5
Lsat_1_v5_gn_4_25561 Lactuca sativa HOM05D005042 ORTHO05D006080 1.6e-24 118.6 118 53.4
Aqoxy3G03731 Aquilegia oxysepala HOM05D005042 ORTHO05D006080 2.7e-24 117.9 786 24.9
SEGI_37091 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 4.6e-24 117.1 212 39.2
Sopen05g006680 Solanum pennellii HOM05D000061 ORTHO05D000050 7.9e-24 116.3 149 49.7
TPR.G37754 Trifolium pratense HOM05D005042 ORTHO05D006080 1.0e-23 115.9 166 45.8
DCAR_007205 Daucus carota HOM05D005042 ORTHO05D006080 5.1e-23 113.6 238 44.5
CAN.G1021.20 Capsicum annuum HOM05D005042 ORTHO05D006080 1.9e-22 111.7 115 55.7
Lalb_Chr10g0099121 Lupinus albus HOM05D005042 ORTHO05D006080 7.4e-22 109.8 640 27.5
Dinv15585 Davidia involucrata HOM05D005042 ORTHO05D006080 9.6e-22 109.4 69 76.8
Sc04g0007390 Simmondsia chinensis HOM05D005042 ORTHO05D006080 9.6e-22 109.4 603 27.9
CAN.G1021.10 Capsicum annuum HOM05D005042 ORTHO05D006080 1.3e-21 109.0 231 38.1
CAN.G1021.24 Capsicum annuum HOM05D005042 ORTHO05D006080 1.3e-21 109.0 92 59.8
DCAR_023741 Daucus carota HOM05D005042 ORTHO05D006080 1.3e-21 109.0 102 58.8
PGSC0003DMG400028305 Solanum tuberosum HOM05D005042 ORTHO05D006080 2.8e-21 107.8 87 64.4
Solyc05g011960.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 3.7e-21 107.5 87 63.2
TAR629G0517 Trochodendron aralioides HOM05D005042 ORTHO05D006080 1.8e-20 105.1 724 27.8
Sopen05g006700 Solanum pennellii HOM05D005042 ORTHO05D006080 2.4e-20 104.8 87 60.9
CARHR061930 Cardamine hirsuta HOM05D005042 ORTHO05D006080 3.1e-20 104.4 120 55.0
Pp3c2_29040 Physcomitrium patens HOM05D005042 ORTHO05D006080 1.2e-19 102.4 516 25.8
ECA234G0547 Erigeron canadensis HOM05D005042 ORTHO05D006080 2.0e-19 101.7 204 36.8
Ah.03g138660 Amaranthus hybridus HOM05D000485 ORTHO05D000341 1.0e-18 99.4 523 27.9
DCAR_030054 Daucus carota HOM05D005042 ORTHO05D006080 2.2e-18 98.2 491 26.1
Dinv15584 Davidia involucrata HOM05D000485 ORTHO05D000341 3.8e-18 97.4 590 24.6
HanXRQChr16g0527171 Helianthus annuus HOM05D005042 ORTHO05D006080 1.9e-17 95.1 211 39.3
TPR.G38503 Trifolium pratense HOM05D005042 ORTHO05D006080 9.3e-17 92.8 561 28.2
CDE10G0071 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 2.1e-16 91.7 427 28.3
Zm00001eb057530 Zea mays HOM05D005042 ORTHO05D006080 3.0e-15 87.8 157 40.1
Mapoly0211s0012 Marchantia polymorpha HOM05D005042 ORTHO05D006080 8.7e-15 86.3 160 36.9
CBR_g19648 Chara braunii HOM05D005042 ORTHO05D006080 3.7e-13 80.9 161 45.3
Os03g0752700 Oryza sativa ssp. japonica HOM05D005042 ORTHO05D006080 1.2e-11 75.9 496 26.4
Nn3g17525 Nelumbo nucifera HOM05D005042 ORTHO05D006080 2.2e-10 71.6 686 23.9
arahy.Tifrunner.gnm1.ann1.6TZ00L Arachis hypogaea HOM05D005042 ORTHO05D006080 9.3e-09 66.2 479 29.0
TAR371G1032 Trochodendron aralioides HOM05D005042 ORTHO05D006080 6.7e-07 60.1 329 27.7
Sed0017498 Sechium edule HOM05D005042 ORTHO05D006080 4.3e-06 57.4 126 34.9


User provided reference genes

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