Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG4G11270 Aethionema arabicum HOM05D001860 ORTHO05D004922 1.3e-140 503.1 252 100.0
Thhalv10019583m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 6.7e-81 304.7 254 63.4
BolC6t39394H Brassica oleracea HOM05D001482 ORTHO05D001499 1.3e-79 300.4 254 63.8
A07p35820 Brassica napus HOM05D001482 ORTHO05D001499 6.3e-79 298.1 261 62.1
BcaC08g46388 Brassica carinata HOM05D001860 ORTHO05D004922 8.2e-79 297.7 254 63.0
BraA07t31168Z Brassica rapa HOM05D001482 ORTHO05D001499 8.2e-79 297.7 261 61.7
BcaB03g14714 Brassica carinata HOM05D001860 ORTHO05D004922 7.7e-77 291.2 254 61.8
AT1G69520 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 1.0e-76 290.8 254 60.2
Carub.0002s1614 Capsella rubella HOM05D001860 ORTHO05D004922 6.5e-76 288.1 253 60.5
AL2G28640 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 1.4e-75 287.0 264 60.6
Sp5g24610 Schrenkiella parvula HOM05D001860 ORTHO05D004922 4.6e-74 282.0 254 59.4
C06p40380 Brassica napus HOM05D001482 ORTHO05D001499 3.9e-73 278.9 230 64.3
CARHR062450 Cardamine hirsuta HOM05D001860 ORTHO05D004922 1.4e-67 260.4 261 57.1
Thhalv10018913m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 7.4e-64 248.1 238 57.1
BraA07t30786Z Brassica rapa HOM05D001860 ORTHO05D004922 5.9e-61 238.4 238 54.2
BcaB03g15478 Brassica carinata HOM05D001860 ORTHO05D004922 1.0e-60 237.7 238 54.2
AT1G69526 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 1.3e-60 237.3 238 53.8
Sp5g24640 Schrenkiella parvula HOM05D001860 ORTHO05D004922 1.3e-60 237.3 238 54.6
CARHR062480 Cardamine hirsuta HOM05D001860 ORTHO05D004922 2.9e-60 236.1 227 55.9
Carub.0002s1617 Capsella rubella HOM05D001860 ORTHO05D004922 7.2e-59 231.5 238 52.9
THA.LOC104822044 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 4.5e-53 212.2 240 50.0
THA.LOC104822184 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 8.5e-52 208.0 235 50.6
Aa31LG4G11250 Aethionema arabicum HOM05D001860 ORTHO05D004922 7.2e-51 204.9 236 50.0
AT1G69523 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 2.7e-50 203.0 235 47.7
THA.LOC104822045 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 3.6e-50 202.6 243 49.0
EL10Ac6g13236 Beta vulgaris HOM05D001860 ORTHO05D004922 1.0e-49 201.1 234 47.4
AUR62032811 Chenopodium quinoa HOM05D001860 ORTHO05D004922 3.0e-49 199.5 234 47.9
Carub.0002s1616 Capsella rubella HOM05D001860 ORTHO05D004922 1.5e-48 197.2 236 46.6
Sp5g24630 Schrenkiella parvula HOM05D001860 ORTHO05D004922 9.7e-48 194.5 233 46.4
CARHR062460 Cardamine hirsuta HOM05D001860 ORTHO05D004922 2.8e-47 193.0 236 47.9
A07p35850 Brassica napus HOM05D001860 ORTHO05D004922 6.3e-47 191.8 236 46.2
RcHm_v2.0_Chr4g0439511 Rosa chinensis HOM05D001860 ORTHO05D004922 6.3e-47 191.8 236 49.2
C06p40330 Brassica napus HOM05D001860 ORTHO05D004922 8.3e-47 191.4 236 46.2
Haze_11992 Corylus avellana HOM05D001860 ORTHO05D004922 4.1e-46 189.1 236 47.5
Manes.05G104100 Manihot esculenta HOM05D001860 ORTHO05D004922 4.1e-46 189.1 236 47.5
FAN07G2810 Fragaria x ananassa HOM05D001860 ORTHO05D004922 5.3e-46 188.7 233 48.9
TWI31G0055 Tripterygium wilfordii HOM05D001860 ORTHO05D004922 5.3e-46 188.7 236 46.2
FAN12G1253 Fragaria x ananassa HOM05D001860 ORTHO05D004922 1.2e-45 187.6 235 48.1
FAN22G1600 Fragaria x ananassa HOM05D001860 ORTHO05D004922 1.2e-45 187.6 235 48.1
AL2G28650 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 2.0e-45 186.8 236 47.0
BcaC08g46392 Brassica carinata HOM05D001860 ORTHO05D004922 3.5e-45 186.0 231 45.5
CANSAT64G2732 Cannabis sativa HOM05D001860 ORTHO05D004922 3.5e-45 186.0 235 46.4
Carub.0002s1615 Capsella rubella HOM05D001860 ORTHO05D004922 3.5e-45 186.0 236 46.6
Eucgr.B03211 Eucalyptus grandis HOM05D001860 ORTHO05D004922 3.5e-45 186.0 234 47.4
MELO3C012111.2 Cucumis melo HOM05D001860 ORTHO05D004922 4.5e-45 185.7 236 46.6
BcaC08g45887 Brassica carinata HOM05D001860 ORTHO05D004922 5.9e-45 185.3 158 60.1
Duzib248G0566 Durio zibethinus HOM05D001860 ORTHO05D004922 5.9e-45 185.3 233 45.9
Nn3g17288 Nelumbo nucifera HOM05D001860 ORTHO05D004922 5.9e-45 185.3 236 47.0
CsaV3_5G032890 Cucumis sativus L. HOM05D001860 ORTHO05D004922 7.7e-45 184.9 235 46.4
CsaV3_5G032900 Cucumis sativus L. HOM05D001860 ORTHO05D004922 7.7e-45 184.9 236 46.2
Thecc.02G343500 Theobroma cacao HOM05D001860 ORTHO05D004922 7.7e-45 184.9 233 45.5
BcaB03g14715 Brassica carinata HOM05D001860 ORTHO05D004922 1.0e-44 184.5 236 43.2
A07p35840 Brassica napus HOM05D001860 ORTHO05D004922 1.0e-44 184.5 236 44.1
C06p40340 Brassica napus HOM05D001860 ORTHO05D004922 1.0e-44 184.5 236 44.1
BolC6t39396H Brassica oleracea HOM05D001860 ORTHO05D004922 1.0e-44 184.5 236 44.1
BolC6t39398H Brassica oleracea HOM05D001860 ORTHO05D004922 1.0e-44 184.5 236 44.1
BraA07t31170Z Brassica rapa HOM05D001860 ORTHO05D004922 1.0e-44 184.5 236 44.1
GSVIVG01019959001 Vitis vinifera HOM05D001860 ORTHO05D004922 1.0e-44 184.5 236 44.9
MSTRG.7790 Avicennia marina HOM05D001860 ORTHO05D004922 1.7e-44 183.7 235 46.0
A07p35830 Brassica napus HOM05D001860 ORTHO05D004922 1.7e-44 183.7 236 43.6
BraA07t31169Z Brassica rapa HOM05D001860 ORTHO05D004922 1.7e-44 183.7 236 43.6
unitig_26.g10298 Utricularia gibba HOM05D001860 ORTHO05D004922 1.7e-44 183.7 239 45.6
BolC6t39399H Brassica oleracea HOM05D001860 ORTHO05D004922 2.2e-44 183.3 234 44.4
Sed0020595 Sechium edule HOM05D001860 ORTHO05D004922 2.2e-44 183.3 237 45.6
Potri.008G088500 Populus trichocarpa HOM05D001860 ORTHO05D004922 2.9e-44 183.0 235 45.5
Hund25222 Selenicereus undatus HOM05D001860 ORTHO05D004922 2.9e-44 183.0 235 45.1
Cfa008963 Carpinus fangiana HOM05D001860 ORTHO05D004922 6.5e-44 181.8 233 46.8
BcaB03g14720 Brassica carinata HOM05D001860 ORTHO05D004922 8.5e-44 181.4 231 44.6
COL.COLO4_22943 Corchorus olitorius HOM05D001860 ORTHO05D004922 8.5e-44 181.4 220 48.6
Atru.chr11.1760 Acer truncatum HOM05D001860 ORTHO05D004922 1.5e-43 180.6 236 47.5
CiPaw.06G086900 Carya illinoinensis HOM05D001860 ORTHO05D004922 5.5e-43 178.7 235 45.1
Gorai.013G087000 Gossypium raimondii HOM05D001860 ORTHO05D004922 5.5e-43 178.7 233 43.8
MD16G1070300 Malus domestica HOM05D001860 ORTHO05D004922 5.5e-43 178.7 255 44.3
BolC6t38800H Brassica oleracea HOM05D000005 ORTHO05D042562 7.2e-43 178.3 298 41.6
TAR629G3174 Trochodendron aralioides HOM05D001860 ORTHO05D004922 7.2e-43 178.3 235 46.0
BraA07t31171Z Brassica rapa HOM05D001860 ORTHO05D004922 9.4e-43 177.9 225 44.9
SalBow2G3316 Salvia bowleyana HOM05D001860 ORTHO05D004922 9.4e-43 177.9 237 44.7
Ciclev10032245m.g Citrus clementina HOM05D001860 ORTHO05D004922 1.2e-42 177.6 239 44.8
MBI05_g10765_MAGBIO Magnolia biondii HOM05D001860 ORTHO05D004922 1.6e-42 177.2 235 46.0
QL03p068521 Quercus lobata HOM05D001860 ORTHO05D004922 2.1e-42 176.8 234 44.9
ECA246G1483 Erigeron canadensis HOM05D001860 ORTHO05D004922 2.7e-42 176.4 237 44.3
Lsat_1_v5_gn_3_52040 Lactuca sativa HOM05D001860 ORTHO05D004922 2.7e-42 176.4 236 44.5
Migut.L01273 Erythranthe guttata HOM05D001860 ORTHO05D004922 3.6e-42 176.0 235 45.5
Lj3A1035T53 Lonicera japonica HOM05D001860 ORTHO05D004922 3.6e-42 176.0 235 44.3
A07p31570 Brassica napus HOM05D001860 ORTHO05D004922 6.1e-42 175.3 147 60.5
CSS0022995 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 6.1e-42 175.3 237 42.6
HanXRQChr17g0545281 Helianthus annuus HOM05D001860 ORTHO05D004922 6.1e-42 175.3 237 44.3
Lj2g0002858 Lotus japonicus HOM05D001860 ORTHO05D004922 6.1e-42 175.3 236 44.5
Phvul.002G083300 Phaseolus vulgaris HOM05D001860 ORTHO05D004922 6.1e-42 175.3 236 44.5
Actinidia31905 Actinidia chinensis HOM05D001860 ORTHO05D004922 8.0e-42 174.9 231 45.0
Os02g0744100 Oryza sativa ssp. japonica HOM05D001860 ORTHO05D004922 8.0e-42 174.9 237 42.6
Glyma.02G109300 Glycine max HOM05D001860 ORTHO05D004922 1.0e-41 174.5 235 44.7
C06p36870 Brassica napus HOM05D000005 ORTHO05D042562 1.4e-41 174.1 298 41.6
Hma1.2p1_1079F.1_g254970 Hydrangea macrophylla HOM05D001860 ORTHO05D004922 1.4e-41 174.1 234 45.3
FvH4_4g31120 Fragaria vesca HOM05D001860 ORTHO05D004922 1.8e-41 173.7 236 46.2
Nitab4.5_0006433g0040 Nicotiana tabacum HOM05D001860 ORTHO05D004922 1.8e-41 173.7 232 44.0
Oeu028270.1 Olea europaea HOM05D001860 ORTHO05D004922 1.8e-41 173.7 236 43.6
SGA_v2.0_scaffold172G38956 Striga asiatica HOM05D001860 ORTHO05D004922 1.8e-41 173.7 235 43.8
ClCG05G024130 Citrullus lanatus HOM05D001860 ORTHO05D004922 2.3e-41 173.3 207 47.8
QL03p068503 Quercus lobata HOM05D001860 ORTHO05D004922 2.3e-41 173.3 208 48.1
SEGI_35280 Sequoiadendron giganteum HOM05D001860 ORTHO05D004922 2.3e-41 173.3 239 43.5
TPR.G36138 Trifolium pratense HOM05D001860 ORTHO05D004922 2.3e-41 173.3 240 43.8
Ca_04822_v3 Cicer arietinum L. HOM05D001860 ORTHO05D004922 3.0e-41 172.9 239 43.1
Peaxi162Scf01530g00038 Petunia axillaris HOM05D001860 ORTHO05D004922 3.0e-41 172.9 235 43.4
Medtr5g041780 Medicago truncatula HOM05D001860 ORTHO05D004922 4.0e-41 172.6 239 44.4
CDE04G1474 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 5.2e-41 172.2 236 43.2
CAN.G771.16 Capsicum annuum HOM05D001860 ORTHO05D004922 6.8e-41 171.8 232 42.7
Solyc06g084030.3 Solanum lycopersicum HOM05D001860 ORTHO05D004922 3.4e-40 169.5 232 43.1
arahy.Tifrunner.gnm1.ann1.0UW6S5 Arachis hypogaea HOM05D001860 ORTHO05D004922 4.4e-40 169.1 236 44.5
Nitab4.5_0001044g0130 Nicotiana tabacum HOM05D001860 ORTHO05D004922 4.4e-40 169.1 232 42.2
DCAR_026253 Daucus carota HOM05D001016 ORTHO05D003396 5.7e-40 168.7 245 41.6
Sopen06g035410 Solanum pennellii HOM05D001860 ORTHO05D004922 5.7e-40 168.7 232 42.7
HPP92_016837 Vanilla planifolia HOM05D001860 ORTHO05D004922 5.7e-40 168.7 235 40.9
CDE06G2440 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 7.5e-40 168.3 237 42.6
Psat2g116760 Pisum sativum HOM05D001860 ORTHO05D004922 1.3e-39 167.5 239 42.7
QL03p068489 Quercus lobata HOM05D001860 ORTHO05D004922 1.7e-39 167.2 208 47.1
PSO017G0798 Papaver somniferum HOM05D001860 ORTHO05D004922 2.8e-39 166.4 235 43.8
Rhsim12G0064600 Rhododendron simsii HOM05D001860 ORTHO05D004922 2.8e-39 166.4 239 42.3
PGSC0003DMG400020063 Solanum tuberosum HOM05D001860 ORTHO05D004922 2.8e-39 166.4 233 42.1
PSO478G0757 Papaver somniferum HOM05D001860 ORTHO05D004922 6.3e-39 165.2 236 44.1
Zm00001eb194590 Zea mays HOM05D001860 ORTHO05D004922 1.4e-38 164.1 235 41.3
Aqoxy5G04114 Aquilegia oxysepala HOM05D001860 ORTHO05D004922 3.1e-38 162.9 236 41.9
Cc11_g12800 Coffea canephora HOM05D001860 ORTHO05D004922 1.6e-37 160.6 236 41.9
Mapoly0002s0191 Marchantia polymorpha HOM05D001860 ORTHO05D004922 2.7e-37 159.8 236 42.4
Sp5g24620 Schrenkiella parvula HOM05D001860 ORTHO05D004922 3.5e-37 159.5 170 50.6
BcaC08g46390 Brassica carinata HOM05D001860 ORTHO05D004922 5.9e-37 158.7 209 43.5
ATR0564G196 Amborella trichopoda HOM05D001860 ORTHO05D004922 7.7e-37 158.3 240 42.1
arahy.Tifrunner.gnm1.ann1.F2WL4X Arachis hypogaea HOM05D001860 ORTHO05D004922 7.7e-37 158.3 264 39.4
Pp3c24_6910 Physcomitrium patens HOM05D001860 ORTHO05D004922 1.0e-36 157.9 233 39.1
arahy.Tifrunner.gnm1.ann1.WF3EDY Arachis hypogaea HOM05D001860 ORTHO05D004922 1.1e-35 154.5 237 41.4
MELO3C012110.2 Cucumis melo HOM05D001860 ORTHO05D004922 2.5e-35 153.3 263 38.8
C06p40360 Brassica napus HOM05D001860 ORTHO05D004922 1.6e-34 150.6 198 43.9
Prupe.1G276900 Prunus persica HOM05D001860 ORTHO05D004922 1.8e-33 147.1 144 56.2
PGR102G3336 Punica granatum HOM05D001860 ORTHO05D004922 2.3e-33 146.7 142 54.9
vmacro01268 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 2.3e-33 146.7 275 36.0
Sabra08G0066100 Salix brachista HOM05D001860 ORTHO05D004922 4.0e-33 146.0 260 37.7
C06p40370 Brassica napus HOM05D001860 ORTHO05D004922 6.8e-33 145.2 147 50.3
FAN17G3114 Fragaria x ananassa HOM05D001860 ORTHO05D004922 2.6e-32 143.3 233 42.5
Lalb_Chr04g0255941 Lupinus albus HOM05D001860 ORTHO05D004922 6.3e-31 138.7 304 33.9
AagrBONN_evm.TU.Sc2ySwM_368.914 Anthoceros agrestis HOM05D001860 ORTHO05D004922 1.1e-30 137.9 233 39.9
SMO239G0167 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 1.1e-30 137.9 235 37.9
vmacro01267 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 5.4e-30 135.6 255 37.3
Gohir.A13G076700 Gossypium hirsutum HOM05D001860 ORTHO05D004922 5.9e-29 132.1 141 50.4
SMO137G0248 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 5.9e-29 132.1 231 38.1
Gohir.D13G076400 Gossypium hirsutum HOM05D001860 ORTHO05D004922 1.3e-28 131.0 141 49.6
Oeu028272.1 Olea europaea HOM05D001860 ORTHO05D004922 1.1e-27 127.9 147 49.0
AUR62005816 Chenopodium quinoa HOM05D001860 ORTHO05D004922 2.2e-23 113.6 119 50.4
Sc11g0002060 Simmondsia chinensis HOM05D001860 ORTHO05D004922 1.6e-18 97.4 140 42.9
MCO09G753 Micromonas commoda HOM05D001860 ORTHO05D004922 1.1e-17 94.7 165 33.9
Ah.02g129590 Amaranthus hybridus HOM05D001860 ORTHO05D004922 1.2e-16 91.3 235 31.5
CSS0019961 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 5.8e-16 89.0 121 41.3
PRCOL_00000783 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 1.3e-15 87.8 175 36.0
CSS0034144 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 1.7e-15 87.4 112 44.6
MCO03G556 Micromonas commoda HOM05D001860 ORTHO05D004922 3.7e-15 86.3 248 29.4
BcaB03g14717 Brassica carinata HOM05D001860 ORTHO05D004922 1.1e-14 84.7 121 41.3
CBR_g41443 Chara braunii HOM05D001860 ORTHO05D004922 1.1e-14 84.7 222 28.8
Cre07.g342550 Chlamydomonas reinhardtii HOM05D001860 ORTHO05D004922 4.6e-13 79.3 121 38.8
CSS0016207 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 7.8e-13 78.6 105 42.9
PRCOL_00003589 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 5.1e-12 75.9 187 32.1
Thhalv10019188m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 4.0e-09 66.2 91 44.0
Dinv16666 Davidia involucrata HOM05D001860 ORTHO05D004922 3.7e-07 59.7 90 41.1
PRCOL_00001331 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 8.3e-07 58.5 209 26.3


User provided reference genes

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