Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG4G10410 Aethionema arabicum HOM05D008070 ORTHO05D001888 4.9e-77 291.2 161 100.0
Carub.0002s1726 Capsella rubella HOM05D008070 ORTHO05D001888 3.0e-26 122.5 165 47.9
BraA02t06717Z Brassica rapa HOM05D008070 ORTHO05D001888 1.5e-25 120.2 164 45.1
CARHR063750 Cardamine hirsuta HOM05D008070 ORTHO05D001888 3.3e-25 119.0 163 46.0
Thhalv10019249m.g Eutrema salsugineum HOM05D008070 ORTHO05D001888 4.3e-25 118.6 154 47.4
AT1G70540 Arabidopsis thaliana HOM05D008070 ORTHO05D001888 5.7e-25 118.2 165 47.3
THA.LOC104822159 Tarenaya hassleriana HOM05D008070 ORTHO05D001888 5.7e-25 118.2 159 44.0
Sp5g25690 Schrenkiella parvula HOM05D008070 ORTHO05D001888 7.4e-25 117.9 169 46.7
AL2G29930 Arabidopsis lyrata HOM05D008070 ORTHO05D001888 9.7e-25 117.5 165 46.7
A02p16620 Brassica napus HOM05D008070 ORTHO05D001888 9.7e-25 117.5 164 43.9
BcaC03g15202 Brassica carinata HOM05D008070 ORTHO05D001888 8.2e-24 114.4 164 44.5
C02p27870 Brassica napus HOM05D008070 ORTHO05D001888 8.2e-24 114.4 164 44.5
BolC2t08833H Brassica oleracea HOM05D008070 ORTHO05D001888 8.2e-24 114.4 164 44.5
AT1G23350 Arabidopsis thaliana HOM05D008070 ORTHO05D001888 4.1e-23 112.1 151 45.7
BcaC06g35034 Brassica carinata HOM05D008070 ORTHO05D001888 1.5e-22 110.2 163 42.3
BolC7t42570H Brassica oleracea HOM05D008070 ORTHO05D001888 1.5e-22 110.2 163 42.3
AL1G37150 Arabidopsis lyrata HOM05D008070 ORTHO05D001888 3.4e-22 109.0 163 44.8
CARHR023800 Cardamine hirsuta HOM05D008070 ORTHO05D001888 7.7e-22 107.8 156 43.6
THA.LOC104822979 Tarenaya hassleriana HOM05D008070 ORTHO05D001888 1.0e-21 107.5 153 43.8
BraA07t29145Z Brassica rapa HOM05D008070 ORTHO05D001888 1.3e-21 107.1 163 41.7
Thhalv10008931m.g Eutrema salsugineum HOM05D008070 ORTHO05D001888 1.3e-21 107.1 160 41.9
BcaB03g14151 Brassica carinata HOM05D008070 ORTHO05D001888 2.2e-21 106.3 154 42.2
BcaC05g26248 Brassica carinata HOM05D008070 ORTHO05D001888 2.2e-21 106.3 165 44.8
C05p22620 Brassica napus HOM05D008070 ORTHO05D001888 2.2e-21 106.3 165 44.8
BolC5t30961H Brassica oleracea HOM05D008070 ORTHO05D001888 2.2e-21 106.3 165 44.8
Sp1g20800 Schrenkiella parvula HOM05D008070 ORTHO05D001888 6.5e-21 104.8 157 42.0
Aa31LG7G7380 Aethionema arabicum HOM05D008070 ORTHO05D001888 1.1e-20 104.0 159 40.3
Carub.0001s2294 Capsella rubella HOM05D008070 ORTHO05D001888 1.4e-20 103.6 155 42.6
BcaC07g39196 Brassica carinata HOM05D008070 ORTHO05D001888 7.2e-20 101.3 154 40.9
BolC8t49825H Brassica oleracea HOM05D008070 ORTHO05D001888 7.2e-20 101.3 154 40.9
BcaB03g11935 Brassica carinata HOM05D008070 ORTHO05D001888 1.6e-19 100.1 155 40.6
A08p28210 Brassica napus HOM05D008070 ORTHO05D001888 1.6e-19 100.1 154 40.3
BraA08t34752Z Brassica rapa HOM05D008070 ORTHO05D001888 1.6e-19 100.1 154 40.3
CiPaw.05G184900 Carya illinoinensis HOM05D008070 ORTHO05D001888 2.1e-19 99.8 150 42.7
BcaB07g32331 Brassica carinata HOM05D008070 ORTHO05D001888 3.6e-19 99.0 165 43.0
C08p21860 Brassica napus HOM05D008070 ORTHO05D001888 1.0e-18 97.4 154 40.3
A09p41290 Brassica napus HOM05D008070 ORTHO05D001888 1.1e-17 94.0 134 46.3
BraA09t39622Z Brassica rapa HOM05D008070 ORTHO05D001888 1.1e-17 94.0 134 44.8
Sed0022593 Sechium edule HOM05D008070 ORTHO05D001888 1.1e-17 94.0 131 41.2
MELO3C010682.2 Cucumis melo HOM05D008070 ORTHO05D001888 5.7e-17 91.7 131 40.5
Atru.chr11.2085 Acer truncatum HOM05D008070 ORTHO05D001888 2.2e-16 89.7 154 42.2
Atru.chr11.2086 Acer truncatum HOM05D008070 ORTHO05D001888 2.2e-16 89.7 154 42.2
CsaV3_2G024840 Cucumis sativus L. HOM05D008070 ORTHO05D001888 4.8e-16 88.6 131 40.5
ClCG08G017790 Citrullus lanatus HOM05D008070 ORTHO05D001888 1.4e-15 87.0 137 39.4
Manes.12G025200 Manihot esculenta HOM05D008070 ORTHO05D001888 3.1e-15 85.9 164 37.8
TWI75G1444 Tripterygium wilfordii HOM05D008070 ORTHO05D001888 6.9e-15 84.7 155 34.8
CANSAT01G1404 Cannabis sativa HOM05D008070 ORTHO05D001888 9.1e-15 84.3 171 35.1
TWI36G0098 Tripterygium wilfordii HOM05D008070 ORTHO05D001888 2.6e-14 82.8 164 33.5
Haze_12224 Corylus avellana HOM05D008070 ORTHO05D001888 7.7e-14 81.3 134 34.3
Cfa009190 Carpinus fangiana HOM05D008070 ORTHO05D001888 1.0e-13 80.9 154 33.1
Duzib251G0841 Durio zibethinus HOM05D008070 ORTHO05D001888 1.7e-13 80.1 161 36.0
Sed0024894 Sechium edule HOM05D008070 ORTHO05D001888 2.9e-13 79.3 135 33.3
Manes.13G026900 Manihot esculenta HOM05D008070 ORTHO05D001888 5.0e-13 78.6 148 33.8
Thhalv10022426m.g Eutrema salsugineum HOM05D005742 ORTHO05D001888 7.2e-12 74.7 130 36.2
Cpa.g.sc69.89 Carica papaya HOM05D008070 ORTHO05D001888 9.4e-12 74.3 150 36.7
QL03p058723 Quercus lobata HOM05D010056 ORTHO05D001888 9.4e-12 74.3 135 33.3
THA.LOC104802706 Tarenaya hassleriana HOM05D005742 ORTHO05D001888 1.2e-11 73.9 131 38.2
QL03p058730 Quercus lobata HOM05D008070 ORTHO05D001888 2.1e-11 73.2 142 35.9
Sp3g05640 Schrenkiella parvula HOM05D005742 ORTHO05D001888 2.7e-11 72.8 130 35.4
COL.COLO4_24233 Corchorus olitorius HOM05D008070 ORTHO05D001888 4.7e-11 72.0 164 34.1
TAR629G1731 Trochodendron aralioides HOM05D008070 ORTHO05D001888 4.7e-11 72.0 164 34.8
Aa31LG5G17240 Aethionema arabicum HOM05D005742 ORTHO05D001888 1.0e-10 70.9 130 36.2
CARHR081260 Cardamine hirsuta HOM05D005742 ORTHO05D001888 1.0e-10 70.9 130 34.6
AL3G17770 Arabidopsis lyrata HOM05D005742 ORTHO05D001888 1.4e-10 70.5 130 35.4
Eucgr.H02532 Eucalyptus grandis HOM05D008070 ORTHO05D001888 1.4e-10 70.5 128 35.2
THA.LOC104818886 Tarenaya hassleriana HOM05D005742 ORTHO05D001888 2.3e-10 69.7 135 35.6
BcaC05g30549 Brassica carinata HOM05D005742 ORTHO05D001888 3.0e-10 69.3 130 34.6
BcaC09g47911 Brassica carinata HOM05D005742 ORTHO05D001888 3.9e-10 68.9 130 35.4
BolC1t05594H Brassica oleracea HOM05D005742 ORTHO05D001888 3.9e-10 68.9 130 35.4
Carub.0003s0617 Capsella rubella HOM05D005742 ORTHO05D001888 3.9e-10 68.9 131 34.4
BcaB05g24587 Brassica carinata HOM05D008070 ORTHO05D001888 8.8e-10 67.8 118 39.0
MELO3C011974.2 Cucumis melo HOM05D008070 ORTHO05D001888 1.1e-09 67.4 131 35.1
CsaV3_5G031330 Cucumis sativus L. HOM05D008070 ORTHO05D001888 1.1e-09 67.4 164 34.1
BNapus_Darmor_BZH_scaffold_118p00010 Brassica napus HOM05D005742 ORTHO05D001888 2.6e-09 66.2 151 33.8
BraA01t04423Z Brassica rapa HOM05D005742 ORTHO05D001888 2.6e-09 66.2 151 33.8
TAR622G1131 Trochodendron aralioides HOM05D008070 ORTHO05D001888 2.6e-09 66.2 156 34.0
CiPaw.06G069400 Carya illinoinensis HOM05D008070 ORTHO05D001888 1.3e-08 63.9 156 31.4
AT3G36659 Arabidopsis thaliana HOM05D005742 ORTHO05D001888 1.7e-08 63.5 130 33.1
MELO3C011973.2 Cucumis melo HOM05D008070 ORTHO05D001888 2.8e-08 62.8 156 30.1
Rhsim02G0004500 Rhododendron simsii HOM05D005742 ORTHO05D001888 2.8e-08 62.8 140 30.0
Sed0000802 Sechium edule HOM05D008070 ORTHO05D001888 3.7e-08 62.4 157 33.8
CANSAT78G0521 Cannabis sativa HOM05D005742 ORTHO05D001888 1.8e-07 60.1 142 32.4
Cpa.g.sc9.68 Carica papaya HOM05D005742 ORTHO05D001888 4.1e-07 58.9 139 32.4
CDE06G2294 Ceratophyllum demersum HOM05D005742 ORTHO05D001888 7.0e-07 58.2 115 35.7
CDE07G0112 Ceratophyllum demersum HOM05D005742 ORTHO05D001888 7.0e-07 58.2 116 36.2
Sed0022116 Sechium edule HOM05D008070 ORTHO05D001888 7.0e-07 58.2 163 27.6
vmacro08056 Vaccinium macrocarpon HOM05D001258 ORTHO05D000158 7.0e-07 58.2 135 34.1
A07p13910 Brassica napus HOM05D001342 ORTHO05D001286 9.1e-07 57.8 106 34.9
DCAR_027000 Daucus carota HOM05D005742 ORTHO05D001888 1.6e-06 57.0 136 34.6
C07p20460 Brassica napus HOM05D001342 ORTHO05D001286 3.5e-06 55.8 106 34.0
MBI19_g03227_MAGBIO Magnolia biondii HOM05D005742 ORTHO05D001888 3.5e-06 55.8 144 28.5


User provided reference genes

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