Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG4G10380 Aethionema arabicum HOM05D005895 ORTHO05D007916 0.0e+00 1160.2 590 100.0
Sp5g25720 Schrenkiella parvula HOM05D005895 ORTHO05D007916 2.4e-291 1005.0 601 86.4
A02p16660 Brassica napus HOM05D005895 ORTHO05D007916 2.7e-290 1001.5 602 85.9
BraA02t06722Z Brassica rapa HOM05D005895 ORTHO05D007916 4.6e-290 1000.7 602 85.9
CARHR063780 Cardamine hirsuta HOM05D005895 ORTHO05D007916 7.8e-290 1000.0 597 86.8
AT1G70570 Arabidopsis thaliana HOM05D005895 ORTHO05D007916 8.6e-289 996.5 600 86.5
AL2G29960 Arabidopsis lyrata HOM05D005895 ORTHO05D007916 2.5e-288 995.0 601 85.9
BcaB05g24593 Brassica carinata HOM05D005895 ORTHO05D007916 3.3e-288 994.6 599 85.6
C02p27920 Brassica napus HOM05D005895 ORTHO05D007916 9.6e-288 993.0 601 85.5
BolC2t08837H Brassica oleracea HOM05D005895 ORTHO05D007916 9.6e-288 993.0 601 85.5
Thhalv10018314m.g Eutrema salsugineum HOM05D005895 ORTHO05D007916 9.6e-288 993.0 601 85.9
Carub.0002s1729 Capsella rubella HOM05D005895 ORTHO05D007916 1.4e-286 989.2 600 85.8
THA.LOC104822982 Tarenaya hassleriana HOM05D005895 ORTHO05D007916 8.4e-284 979.9 597 83.6
BcaC03g15207 Brassica carinata HOM05D005895 ORTHO05D007916 5.1e-281 970.7 588 85.2
Gohir.A04G136400 Gossypium hirsutum HOM05D005895 ORTHO05D007916 1.6e-258 896.0 597 75.4
Gorai.012G172600 Gossypium raimondii HOM05D005895 ORTHO05D007916 1.1e-256 889.8 597 74.9
Ciclev10030909m.g Citrus clementina HOM05D005895 ORTHO05D007916 9.0e-254 880.2 597 74.4
QL03p058522 Quercus lobata HOM05D005895 ORTHO05D007916 1.5e-253 879.4 596 74.3
Thecc.02G257400 Theobroma cacao HOM05D005895 ORTHO05D007916 1.5e-253 879.4 596 74.7
COL.COLO4_24246 Corchorus olitorius HOM05D005895 ORTHO05D007916 2.6e-253 878.6 597 74.9
PGR119G2505 Punica granatum HOM05D005895 ORTHO05D007916 1.1e-251 873.2 598 74.1
Potri.010G044900 Populus trichocarpa HOM05D005895 ORTHO05D007916 1.9e-251 872.5 597 73.4
Haze_12237 Corylus avellana HOM05D005895 ORTHO05D007916 2.1e-250 869.0 598 73.7
MELO3C011963.2 Cucumis melo HOM05D005895 ORTHO05D007916 4.6e-250 867.8 570 76.0
Cfa009199 Carpinus fangiana HOM05D005895 ORTHO05D007916 1.0e-249 866.7 598 73.9
Atru.chr11.2133 Acer truncatum HOM05D005895 ORTHO05D007916 1.3e-249 866.3 599 73.6
Cpa.g.sc33.4 Carica papaya HOM05D005895 ORTHO05D007916 2.3e-249 865.5 585 75.0
Gohir.D04G179500 Gossypium hirsutum HOM05D005895 ORTHO05D007916 3.0e-249 865.1 578 75.3
CiPaw.05G183400 Carya illinoinensis HOM05D005895 ORTHO05D007916 8.7e-249 863.6 597 73.0
Atru.chr11.2117 Acer truncatum HOM05D005895 ORTHO05D007916 1.1e-248 863.2 599 73.1
GSVIVG01004086001 Vitis vinifera HOM05D005895 ORTHO05D007916 1.5e-248 862.8 599 73.1
Prupe.1G247400 Prunus persica HOM05D005895 ORTHO05D007916 1.9e-248 862.4 598 73.6
Sabra10G0023200 Salix brachista HOM05D005895 ORTHO05D007916 1.9e-248 862.4 610 71.1
CsaV3_5G031240 Cucumis sativus L. HOM05D005895 ORTHO05D007916 9.7e-248 860.1 570 75.1
Eucgr.H02516 Eucalyptus grandis HOM05D005895 ORTHO05D007916 2.2e-247 859.0 596 73.3
TWI36G0590 Tripterygium wilfordii HOM05D005895 ORTHO05D007916 3.7e-247 858.2 601 72.5
CANSAT01G2589 Cannabis sativa HOM05D005895 ORTHO05D007916 8.2e-247 857.1 598 73.2
CSS0018548 Camellia sinensis var. sinensis HOM05D005895 ORTHO05D007916 2.4e-246 855.5 594 73.1
TPR.G34672 Trifolium pratense HOM05D005895 ORTHO05D007916 2.4e-246 855.5 603 71.5
Gorai.005G179700 Gossypium raimondii HOM05D005895 ORTHO05D007916 1.5e-245 852.8 596 73.8
RcHm_v2.0_Chr4g0433361 Rosa chinensis HOM05D005895 ORTHO05D007916 2.0e-245 852.4 597 72.2
Actinidia27801 Actinidia chinensis HOM05D005895 ORTHO05D007916 1.0e-244 850.1 596 72.5
Medtr8g069525 Medicago truncatula HOM05D005895 ORTHO05D007916 1.3e-244 849.7 583 72.7
TAR371G0306 Trochodendron aralioides HOM05D005895 ORTHO05D007916 1.7e-244 849.4 595 72.1
MD13G1098000 Malus domestica HOM05D005895 ORTHO05D007916 2.2e-244 849.0 600 71.7
Sed0023548 Sechium edule HOM05D005895 ORTHO05D007916 7.2e-243 844.0 601 72.0
FvH4_4g25910 Fragaria vesca HOM05D005895 ORTHO05D007916 2.7e-242 842.0 547 76.6
Lj6A811T72 Lonicera japonica HOM05D005895 ORTHO05D007916 1.0e-241 840.1 595 71.4
FAN12G1268 Fragaria x ananassa HOM05D005895 ORTHO05D007916 1.8e-241 839.3 547 76.4
MD16G1098900 Malus domestica HOM05D005895 ORTHO05D007916 2.3e-241 839.0 600 70.8
arahy.Tifrunner.gnm1.ann1.LQ91H7 Arachis hypogaea HOM05D005895 ORTHO05D007916 1.1e-240 836.6 597 71.7
Glyma.08G283100 Glycine max HOM05D005895 ORTHO05D007916 3.3e-240 835.1 541 75.0
Hund06020 Selenicereus undatus HOM05D005895 ORTHO05D007916 7.4e-240 833.9 605 69.9
FAN12G2739 Fragaria x ananassa HOM05D005895 ORTHO05D007916 1.7e-239 832.8 543 76.4
Solyc04g025540.3 Solanum lycopersicum HOM05D005895 ORTHO05D007916 1.7e-239 832.8 595 71.6
FAN07G1086 Fragaria x ananassa HOM05D005895 ORTHO05D007916 2.2e-239 832.4 547 75.9
VMungo0251G0514 Vigna mungo HOM05D005895 ORTHO05D007916 2.8e-239 832.0 597 69.8
AUR62024296 Chenopodium quinoa HOM05D005895 ORTHO05D007916 2.4e-238 828.9 548 75.4
CAN.G7.20 Capsicum annuum HOM05D005895 ORTHO05D007916 3.1e-238 828.6 594 71.2
MBI10_g00734_MAGBIO Magnolia biondii HOM05D005895 ORTHO05D007916 6.9e-238 827.4 596 70.3
Sopen04g012770 Solanum pennellii HOM05D005895 ORTHO05D007916 2.0e-237 825.9 595 71.1
PSO478G2260 Papaver somniferum HOM05D005895 ORTHO05D007916 4.5e-237 824.7 596 71.1
DCAR_007061 Daucus carota HOM05D005895 ORTHO05D007916 7.7e-237 823.9 547 73.9
FAN17G0264 Fragaria x ananassa HOM05D005895 ORTHO05D007916 1.0e-236 823.5 578 72.1
PSO017G6602 Papaver somniferum HOM05D005895 ORTHO05D007916 1.0e-236 823.5 596 70.8
AUR62005446 Chenopodium quinoa HOM05D005895 ORTHO05D007916 2.2e-236 822.4 548 74.6
vmacro01130 Vaccinium macrocarpon HOM05D005895 ORTHO05D007916 3.8e-236 821.6 641 67.6
ECA233G5390 Erigeron canadensis HOM05D005895 ORTHO05D007916 5.0e-236 821.2 581 71.6
THA.LOC104818151 Tarenaya hassleriana HOM05D005895 ORTHO05D007916 3.6e-234 815.1 497 83.1
Ah.03g133150 Amaranthus hybridus HOM05D005895 ORTHO05D007916 4.7e-234 814.7 559 73.2
Lalb_Chr05g0228401 Lupinus albus HOM05D005895 ORTHO05D007916 1.8e-233 812.8 592 69.9
SalBow8G2958 Salvia bowleyana HOM05D005895 ORTHO05D007916 3.0e-233 812.0 582 70.3
Lj4g0008127 Lotus japonicus HOM05D005895 ORTHO05D007916 1.5e-232 809.7 591 69.7
EL10Ac6g13787 Beta vulgaris HOM05D005895 ORTHO05D007916 2.6e-232 808.9 567 72.0
Migut.E00194 Erythranthe guttata HOM05D005895 ORTHO05D007916 2.8e-231 805.4 542 73.8
Aqoxy5G03807 Aquilegia oxysepala HOM05D005895 ORTHO05D007916 6.3e-231 804.3 554 71.5
Cc04_g11160 Coffea canephora HOM05D005895 ORTHO05D007916 4.1e-230 801.6 552 73.0
Sc04g0009430 Simmondsia chinensis HOM05D005895 ORTHO05D007916 4.5e-229 798.1 580 70.0
Gohir.D02G159600 Gossypium hirsutum HOM05D005895 ORTHO05D007916 1.7e-228 796.2 596 70.5
HanXRQChr08g0208071 Helianthus annuus HOM05D005895 ORTHO05D007916 3.2e-227 792.0 546 72.5
FAN22G0931 Fragaria x ananassa HOM05D005895 ORTHO05D007916 3.3e-224 781.9 580 69.8
Nitab4.5_0006332g0030 Nicotiana tabacum HOM05D005895 ORTHO05D007916 1.0e-220 770.4 593 67.5
ClCG05G025660 Citrullus lanatus HOM05D005895 ORTHO05D007916 3.8e-220 768.5 570 69.8
Aqoxy3G01161 Aquilegia oxysepala HOM05D005895 ORTHO05D007916 3.6e-218 761.9 537 70.0
Zm00001eb231230 Zea mays HOM05D005895 ORTHO05D007916 2.3e-217 759.2 554 68.6
Manes.12G024300 Manihot esculenta HOM05D005895 ORTHO05D007916 4.0e-217 758.4 521 74.7
Nn4g22655 Nelumbo nucifera HOM05D005895 ORTHO05D007916 2.6e-216 755.7 546 69.6
Os02g0131200 Oryza sativa ssp. japonica HOM05D005895 ORTHO05D007916 7.5e-216 754.2 561 68.4
HPP92_003081 Vanilla planifolia HOM05D005895 ORTHO05D007916 1.7e-215 753.1 524 71.8
Psat0s3772g0040 Pisum sativum HOM05D005895 ORTHO05D007916 2.4e-214 749.2 530 72.1
Lsat_1_v5_gn_8_150700 Lactuca sativa HOM05D005895 ORTHO05D007916 4.1e-214 748.4 595 66.6
Ca_22578_v3 Cicer arietinum L. HOM05D005895 ORTHO05D007916 5.4e-214 748.0 529 71.3
ATR0585G083 Amborella trichopoda HOM05D005895 ORTHO05D007916 1.9e-211 739.6 541 70.1
arahy.Tifrunner.gnm1.ann1.0I87EX Arachis hypogaea HOM05D005895 ORTHO05D007916 7.2e-211 737.6 526 71.7
Manes.13G025800 Manihot esculenta HOM05D005895 ORTHO05D007916 5.2e-209 731.5 472 77.8
Nitab4.5_0000370g0030 Nicotiana tabacum HOM05D005895 ORTHO05D007916 8.8e-209 730.7 593 64.6
Phvul.003G063900 Phaseolus vulgaris HOM05D005895 ORTHO05D007916 8.8e-209 730.7 465 75.3
MSTRG.2417 Avicennia marina HOM05D005895 ORTHO05D007916 1.2e-200 703.7 446 77.8
Duzib251G0200 Durio zibethinus HOM05D005895 ORTHO05D007916 4.4e-200 701.8 596 63.4
Gohir.A03G136300 Gossypium hirsutum HOM05D005895 ORTHO05D007916 1.4e-198 696.8 494 71.9
Sed0009772 Sechium edule HOM05D005895 ORTHO05D007916 1.6e-197 693.3 468 74.1
Oeu059911.1 Olea europaea HOM05D005895 ORTHO05D007916 3.1e-193 679.1 532 66.2
Mapoly0129s0050 Marchantia polymorpha HOM05D005895 ORTHO05D007916 2.9e-191 672.5 543 63.7
Zm00001eb209010 Zea mays HOM05D005895 ORTHO05D007916 8.6e-188 661.0 554 61.7
Pp3c12_14340 Physcomitrium patens HOM05D005895 ORTHO05D007916 3.6e-186 655.6 508 65.6
unitig_52.g17177 Utricularia gibba HOM05D005895 ORTHO05D007916 1.3e-183 647.1 564 60.6
Peaxi162Scf01242g00143 Petunia axillaris HOM05D005895 ORTHO05D007916 3.8e-175 619.0 388 77.3
SMO119G0060 Selaginella moellendorffii HOM05D005895 ORTHO05D007916 3.2e-174 615.9 510 62.9
AagrBONN_evm.TU.Sc2ySwM_368.1304 Anthoceros agrestis HOM05D005895 ORTHO05D007916 7.1e-166 588.2 452 65.0
Dinv24803 Davidia involucrata HOM05D005895 ORTHO05D007916 5.1e-156 555.4 393 72.0
Pp3c10_19590 Physcomitrium patens HOM05D005895 ORTHO05D007916 2.4e-121 440.3 334 64.1
FAN18G3006 Fragaria x ananassa HOM05D005895 ORTHO05D007916 1.4e-89 334.7 200 80.5
SHI17741 Sapria himalayana HOM05D000002 ORTHO05D000001 1.2e-88 331.6 257 66.9
CBR_g37586 Chara braunii HOM05D000019 ORTHO05D000048 4.1e-65 253.4 272 50.7
CBR_g37584 Chara braunii HOM05D000019 ORTHO05D000048 1.2e-53 215.3 208 52.4
SEGI_05407 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 2.2e-50 204.5 154 67.5
Peaxi162Scf02256g00001 Petunia axillaris HOM05D005895 ORTHO05D007916 1.3e-45 188.7 143 65.0
BcaB08g34808 Brassica carinata HOM05D005895 ORTHO05D007916 1.5e-43 181.8 102 90.2
SEGI_24305 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 3.1e-36 157.5 104 72.1
SEGI_08481 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 3.5e-32 144.1 101 66.3
BcaB05g24594 Brassica carinata HOM05D005895 ORTHO05D012801 4.2e-25 120.6 107 64.5
DCAR_028023 Daucus carota HOM05D005895 ORTHO05D007916 5.5e-25 120.2 81 75.3
Ah.07g201790 Amaranthus hybridus HOM05D005895 ORTHO05D007916 1.5e-22 112.1 66 78.8
SMO163G0072 Selaginella moellendorffii HOM05D005895 ORTHO05D007916 2.8e-21 107.8 174 41.4
Rhsim12G0041200 Rhododendron simsii HOM05D005895 ORTHO05D007916 6.9e-20 103.2 76 67.1
A02p16670 Brassica napus HOM05D005895 ORTHO05D012801 5.9e-19 100.1 65 76.9
BraA02t06723Z Brassica rapa HOM05D005895 ORTHO05D012801 5.9e-19 100.1 65 76.9
CSS0038190 Camellia sinensis var. sinensis HOM05D033929 ORTHO05D026310 7.7e-19 99.8 117 47.9
C02p27930 Brassica napus HOM05D005895 ORTHO05D012801 2.9e-18 97.8 68 73.5
BolC2t08838H Brassica oleracea HOM05D005895 ORTHO05D012801 2.9e-18 97.8 68 73.5
DCAR_029453 Daucus carota HOM05D005895 ORTHO05D007916 3.9e-15 87.4 67 70.1
Gorai.012G172500 Gossypium raimondii HOM05D005895 ORTHO05D007916 2.5e-14 84.7 52 76.9
Actinidia08142 Actinidia chinensis HOM05D005895 ORTHO05D026310 4.7e-08 63.9 107 42.1
SEGI_38231 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 8.8e-07 59.7 54 57.4


User provided reference genes

Program Settings