Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG4G10370 Aethionema arabicum HOM05D005436 ORTHO05D006215 1.1e-155 553.5 347 100.0
Sp5g25750 Schrenkiella parvula HOM05D005436 ORTHO05D006215 1.8e-116 423.3 350 81.1
Carub.0002s1732 Capsella rubella HOM05D005436 ORTHO05D006215 3.4e-115 419.1 348 81.6
CARHR063810 Cardamine hirsuta HOM05D005436 ORTHO05D006215 2.8e-114 416.0 347 80.4
AL2G30010 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 8.3e-114 414.5 348 80.2
THA.LOC104822162 Tarenaya hassleriana HOM05D005436 ORTHO05D006215 2.4e-113 412.9 347 80.1
Thhalv10018848m.g Eutrema salsugineum HOM05D005436 ORTHO05D006215 3.8e-111 405.6 333 82.0
BraA07t31265Z Brassica rapa HOM05D005436 ORTHO05D006215 1.9e-110 403.3 348 77.0
A07p37030 Brassica napus HOM05D005436 ORTHO05D006215 2.5e-110 402.9 349 77.9
C06p44590 Brassica napus HOM05D005436 ORTHO05D006215 3.6e-109 399.1 349 77.7
BolC6t39523H Brassica oleracea HOM05D005436 ORTHO05D006215 4.0e-108 395.6 348 76.4
AT1G70590 Arabidopsis thaliana HOM05D005436 ORTHO05D006215 1.9e-102 376.7 353 74.5
Thecc.02G258400 Theobroma cacao HOM05D005436 ORTHO05D006215 5.6e-94 348.6 347 72.3
Gorai.009G335800 Gossypium raimondii HOM05D005436 ORTHO05D006215 8.0e-93 344.7 347 72.3
COL.COLO4_24251 Corchorus olitorius HOM05D005436 ORTHO05D006215 1.0e-92 344.4 347 70.0
Gohir.A05G312700 Gossypium hirsutum HOM05D005436 ORTHO05D006215 2.0e-91 340.1 347 71.2
Duzib251G0682 Durio zibethinus HOM05D005436 ORTHO05D006215 2.9e-90 336.3 347 69.7
Manes.13G025400 Manihot esculenta HOM05D005436 ORTHO05D006215 3.2e-89 332.8 344 68.3
TAR629G0589 Trochodendron aralioides HOM05D005436 ORTHO05D006215 7.0e-89 331.6 357 66.4
Potri.010G045300 Populus trichocarpa HOM05D005436 ORTHO05D006215 1.0e-87 327.8 347 67.7
Cfa009203 Carpinus fangiana HOM05D005436 ORTHO05D006215 1.3e-87 327.4 345 67.2
TAR629G3419 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.3e-87 327.4 357 66.7
Gorai.002G187200 Gossypium raimondii HOM05D005436 ORTHO05D006215 1.1e-86 324.3 347 69.5
Gohir.D01G151000 Gossypium hirsutum HOM05D005436 ORTHO05D006215 4.3e-86 322.4 347 69.2
Gohir.A01G159300 Gossypium hirsutum HOM05D005436 ORTHO05D006215 7.3e-86 321.6 347 68.9
Lsat_1_v5_gn_8_150780 Lactuca sativa HOM05D005436 ORTHO05D006215 7.3e-86 321.6 347 68.9
Atru.chr11.2113 Acer truncatum HOM05D005436 ORTHO05D006215 1.2e-85 320.9 349 67.0
Atru.chr11.2128 Acer truncatum HOM05D005436 ORTHO05D006215 1.2e-85 320.9 349 67.0
Ciclev10032010m.g Citrus clementina HOM05D005436 ORTHO05D006215 2.1e-85 320.1 346 67.6
CSS0002796 Camellia sinensis var. sinensis HOM05D005436 ORTHO05D006215 2.8e-85 319.7 361 65.7
Sabra10G0023000 Salix brachista HOM05D005436 ORTHO05D006215 2.8e-85 319.7 347 66.6
AUR62005449 Chenopodium quinoa HOM05D005436 ORTHO05D006215 8.0e-85 318.2 348 67.2
Lj3A1057T77 Lonicera japonica HOM05D005436 ORTHO05D006215 1.4e-84 317.4 349 67.6
HanXRQChr08g0208111 Helianthus annuus HOM05D005436 ORTHO05D006215 1.8e-84 317.0 351 67.8
Hund25385 Selenicereus undatus HOM05D005436 ORTHO05D006215 8.9e-84 314.7 350 65.4
Oeu001711.1 Olea europaea HOM05D005436 ORTHO05D006215 1.2e-83 314.3 347 65.7
Nitab4.5_0004301g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 1.5e-83 313.9 348 65.8
QL03p058434 Quercus lobata HOM05D005436 ORTHO05D006215 3.4e-83 312.8 346 67.3
Prupe.1G243200 Prunus persica HOM05D005436 ORTHO05D006215 7.5e-83 311.6 345 64.6
TWI36G0572 Tripterygium wilfordii HOM05D005436 ORTHO05D006215 1.7e-82 310.5 347 66.9
EL10Ac6g13796 Beta vulgaris HOM05D005436 ORTHO05D006215 1.1e-81 307.8 347 66.3
Migut.E00197 Erythranthe guttata HOM05D005436 ORTHO05D006215 1.4e-81 307.4 352 64.8
MSTRG.2420 Avicennia marina HOM05D005436 ORTHO05D006215 1.9e-81 307.0 347 65.1
MSTRG.7922 Avicennia marina HOM05D005436 ORTHO05D006215 9.2e-81 304.7 345 64.6
PGR119G1276 Punica granatum HOM05D005436 ORTHO05D006215 9.2e-81 304.7 347 65.1
CANSAT01G1386 Cannabis sativa HOM05D005436 ORTHO05D006215 2.1e-80 303.5 353 58.6
Ah.03g133110 Amaranthus hybridus HOM05D005436 ORTHO05D006215 3.5e-80 302.8 350 64.3
Cpa.g.sc33.9 Carica papaya HOM05D005436 ORTHO05D006215 7.8e-80 301.6 349 63.9
Actinidia27803 Actinidia chinensis HOM05D005436 ORTHO05D006215 2.3e-79 300.1 354 63.3
Sopen05g008220 Solanum pennellii HOM05D005436 ORTHO05D006215 3.0e-79 299.7 346 63.3
Sc14g0008720 Simmondsia chinensis HOM05D005436 ORTHO05D006215 6.6e-79 298.5 351 63.2
PSO832G1925 Papaver somniferum HOM05D005436 ORTHO05D006215 8.6e-79 298.1 374 58.6
Solyc05g013410.3 Solanum lycopersicum HOM05D005436 ORTHO05D006215 1.5e-78 297.4 346 63.9
CDE07G1825 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 1.9e-78 297.0 351 63.2
BcaB03g14825 Brassica carinata HOM05D005436 ORTHO05D006215 4.3e-78 295.8 210 71.9
CiPaw.05G183100 Carya illinoinensis HOM05D005436 ORTHO05D006215 4.3e-78 295.8 345 64.3
Rhsim12G0040900 Rhododendron simsii HOM05D005436 ORTHO05D006215 9.5e-78 294.7 360 61.9
Eucgr.H02509 Eucalyptus grandis HOM05D005436 ORTHO05D006215 1.2e-77 294.3 381 59.6
PGSC0003DMG400018621 Solanum tuberosum HOM05D005436 ORTHO05D006215 2.1e-77 293.5 346 63.3
CsaV3_2G024910 Cucumis sativus L. HOM05D005436 ORTHO05D006215 1.1e-76 291.2 372 61.3
Glyma.01G026500 Glycine max HOM05D005436 ORTHO05D006215 1.5e-75 287.3 346 59.2
Lj2g0004338 Lotus japonicus HOM05D005436 ORTHO05D006215 2.0e-75 287.0 343 63.3
ClCG08G017720 Citrullus lanatus HOM05D005436 ORTHO05D006215 5.8e-75 285.4 368 59.8
SGA_v2.0_scaffold87G27081 Striga asiatica HOM05D005436 ORTHO05D006215 7.6e-75 285.0 345 62.6
SHI17740 Sapria himalayana HOM05D005436 ORTHO05D006215 1.3e-74 284.3 295 72.2
PGSC0003DMG400016374 Solanum tuberosum HOM05D005436 ORTHO05D006215 1.3e-74 284.3 358 61.5
MD13G1102600 Malus domestica HOM05D005436 ORTHO05D006215 2.9e-74 283.1 346 61.8
Nitab4.5_0000069g0320 Nicotiana tabacum HOM05D005436 ORTHO05D006215 2.9e-74 283.1 279 71.7
Sopen01g003470 Solanum pennellii HOM05D005436 ORTHO05D006215 2.9e-74 283.1 358 60.9
Lalb_Chr16g0381971 Lupinus albus HOM05D005436 ORTHO05D006215 1.4e-73 280.8 345 62.0
Manes.12G023900 Manihot esculenta HOM05D005436 ORTHO05D006215 2.4e-73 280.0 345 64.3
Nitab4.5_0002631g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 3.2e-73 279.6 334 63.2
Gohir.D05G314200 Gossypium hirsutum HOM05D005436 ORTHO05D006215 5.4e-73 278.9 226 64.6
unitig_744.g24291 Utricularia gibba HOM05D005436 ORTHO05D006215 7.1e-73 278.5 341 60.1
Nitab4.5_0000740g0060 Nicotiana tabacum HOM05D005436 ORTHO05D006215 9.2e-73 278.1 346 61.3
Solyc01g007930.4 Solanum lycopersicum HOM05D005436 ORTHO05D006215 2.1e-72 276.9 359 60.2
ATR0686G177 Amborella trichopoda HOM05D005436 ORTHO05D006215 2.7e-72 276.6 347 61.7
Migut.L01484 Erythranthe guttata HOM05D005436 ORTHO05D006215 7.8e-72 275.0 284 70.4
VMungo1215G1754 Vigna mungo HOM05D005436 ORTHO05D006215 7.8e-72 275.0 346 58.1
MELO3C010688.2 Cucumis melo HOM05D005436 ORTHO05D006215 3.0e-71 273.1 397 43.1
Aqoxy5G03784 Aquilegia oxysepala HOM05D005436 ORTHO05D006215 5.1e-71 272.3 355 60.8
ECA233G4095 Erigeron canadensis HOM05D005436 ORTHO05D006215 5.1e-71 272.3 284 70.8
Glyma.02G038300 Glycine max HOM05D005436 ORTHO05D006215 3.3e-70 269.6 346 54.3
Medtr5g033210 Medicago truncatula HOM05D005436 ORTHO05D006215 4.3e-70 269.2 342 61.1
Dinv15239 Davidia involucrata HOM05D005436 ORTHO05D006215 7.3e-70 268.5 241 58.5
Actinidia08140 Actinidia chinensis HOM05D005436 ORTHO05D006215 9.6e-70 268.1 241 58.5
arahy.Tifrunner.gnm1.ann1.9TCE4B Arachis hypogaea HOM05D005436 ORTHO05D006215 2.1e-69 266.9 344 61.3
TAR371G0549 Trochodendron aralioides HOM05D005436 ORTHO05D006215 2.1e-69 266.9 248 55.6
Nn4g22635 Nelumbo nucifera HOM05D005436 ORTHO05D006215 8.1e-69 265.0 245 55.5
CAN.G282.54 Capsicum annuum HOM05D005436 ORTHO05D006215 6.8e-68 261.9 284 68.7
Haze_12240 Corylus avellana HOM05D005436 ORTHO05D006215 2.0e-67 260.4 226 58.8
RcHm_v2.0_Chr4g0432791 Rosa chinensis HOM05D005436 ORTHO05D006215 2.6e-67 260.0 345 60.6
DCAR_024434 Daucus carota HOM05D005436 ORTHO05D006215 2.4e-65 253.4 346 56.4
FvH4_4g25470 Fragaria vesca HOM05D005436 ORTHO05D006215 3.3e-62 243.0 347 57.9
FAN17G0814 Fragaria x ananassa HOM05D005436 ORTHO05D006215 5.6e-62 242.3 344 57.0
MBI10_g03014_MAGBIO Magnolia biondii HOM05D005436 ORTHO05D006215 1.3e-61 241.1 358 57.8
Ca_04576_v3 Cicer arietinum L. HOM05D005436 ORTHO05D006215 1.6e-61 240.7 342 58.2
vmacro01128 Vaccinium macrocarpon HOM05D005436 ORTHO05D006215 1.6e-61 240.7 313 62.0
Phvul.002G150600 Phaseolus vulgaris HOM05D005436 ORTHO05D006215 8.1e-61 238.4 346 52.3
Sed0020021 Sechium edule HOM05D005436 ORTHO05D006215 8.1e-61 238.4 294 54.4
HPP92_021381 Vanilla planifolia HOM05D005436 ORTHO05D006215 5.3e-60 235.7 356 54.2
Lalb_Chr09g0326141 Lupinus albus HOM05D005436 ORTHO05D006215 9.0e-60 235.0 347 56.5
Potri.008G187200 Populus trichocarpa HOM05D005436 ORTHO05D006215 2.6e-59 233.4 219 54.8
arahy.Tifrunner.gnm1.ann1.RINP63 Arachis hypogaea HOM05D005436 ORTHO05D006215 4.4e-59 232.6 420 50.5
FAN07G0404 Fragaria x ananassa HOM05D005436 ORTHO05D006215 4.9e-58 229.2 344 55.5
AUR62024292 Chenopodium quinoa HOM05D005436 ORTHO05D006215 1.1e-57 228.0 251 71.7
FAN12G3651 Fragaria x ananassa HOM05D005436 ORTHO05D006215 5.4e-57 225.7 374 38.5
SEGI_41390 Sequoiadendron giganteum HOM05D005436 ORTHO05D006215 7.1e-57 225.3 287 61.7
FAN22G0693 Fragaria x ananassa HOM05D005436 ORTHO05D006215 7.3e-54 215.3 349 54.4
SalBow2G2235 Salvia bowleyana HOM05D005436 ORTHO05D006215 2.4e-52 210.3 280 61.8
unitig_21.g20870 Utricularia gibba HOM05D005436 ORTHO05D006215 3.8e-50 203.0 320 40.0
CAN.G227.3 Capsicum annuum HOM05D005436 ORTHO05D006215 1.8e-47 194.1 186 55.4
Pp3c16_22820 Physcomitrium patens HOM05D005436 ORTHO05D006215 2.0e-43 180.6 339 50.7
RcHm_v2.0_Chr7g0240871 Rosa chinensis HOM05D005436 ORTHO05D006215 7.6e-43 178.7 219 51.1
Psat2g092560 Pisum sativum HOM05D005436 ORTHO05D006215 1.1e-41 174.9 181 54.7
SMO334G0079 Selaginella moellendorffii HOM05D005436 ORTHO05D006215 7.9e-40 168.7 263 59.3
GSVIVG01004082001 Vitis vinifera HOM05D005436 ORTHO05D006215 3.7e-37 159.8 194 74.7
Cc11_g15600 Coffea canephora HOM05D005436 ORTHO05D006215 1.1e-36 158.3 194 73.2
CDE04G1163 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 5.8e-35 152.5 137 57.7
Peaxi162Scf00128g00005 Petunia axillaris HOM05D005436 ORTHO05D006215 6.5e-34 149.1 242 59.5
CBR_g41529 Chara braunii HOM05D005436 ORTHO05D006215 3.2e-33 146.7 122 58.2
FAN18G0478 Fragaria x ananassa HOM05D005436 ORTHO05D006215 3.5e-32 143.3 178 47.8
FAN13G0137 Fragaria x ananassa HOM05D005436 ORTHO05D006215 2.3e-31 140.6 177 47.5
Os04g0476000 Oryza sativa ssp. japonica HOM05D005436 ORTHO05D006215 6.7e-31 139.0 288 51.0
FAN08G0615 Fragaria x ananassa HOM05D005436 ORTHO05D006215 3.3e-30 136.7 177 46.9
AagrBONN_evm.TU.Sc2ySwM_344.5149 Anthoceros agrestis HOM05D005436 ORTHO05D006215 1.0e-26 125.2 279 48.7
FvH4_5g38910 Fragaria vesca HOM05D005436 ORTHO05D006215 1.8e-23 114.4 116 52.6
TPR.G38771 Trifolium pratense HOM05D005436 ORTHO05D006215 1.8e-23 114.4 76 69.7
CAN.G227.4 Capsicum annuum HOM05D005436 ORTHO05D006215 2.2e-21 107.5 174 71.3
TAR371G0328 Trochodendron aralioides HOM05D005436 ORTHO05D006215 4.5e-19 99.8 143 79.7
RcHm_v2.0_Chr4g0436601 Rosa chinensis HOM05D005436 ORTHO05D006215 1.4e-17 94.7 84 57.1
TAR314G0004 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.9e-17 94.4 86 52.3
AL3G40260 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 2.7e-16 90.5 60 73.3
TAR633G1814 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.3e-13 81.6 128 79.7
TPR.G38818 Trifolium pratense HOM05D005436 ORTHO05D006215 1.5e-11 74.7 63 60.3
TAR371G0429 Trochodendron aralioides HOM05D044080 ORTHO05D006215 4.5e-11 73.2 189 46.6
RcHm_v2.0_Chr1g0318701 Rosa chinensis HOM05D005436 ORTHO05D006215 7.2e-09 65.9 54 61.1
TAR314G0002 Trochodendron aralioides HOM05D005436 ORTHO05D006215 3.6e-08 63.5 41 65.9
TAR633G0170 Trochodendron aralioides HOM05D005436 ORTHO05D006215 8.0e-08 62.4 122 77.0
RcHm_v2.0_Chr2g0120671 Rosa chinensis HOM05D009478 ORTHO05D010213 2.0e-06 57.8 42 57.1


User provided reference genes

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