Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG3G9950 Aethionema arabicum HOM05D006017 ORTHO05D007821 6.0e-282 973.4 455 100.0
BcaB05g22107 Brassica carinata HOM05D006017 ORTHO05D007821 2.6e-269 931.4 453 94.5
Sp6g16110 Schrenkiella parvula HOM05D006017 ORTHO05D007821 4.2e-267 924.1 455 93.8
C02p17670 Brassica napus HOM05D006017 ORTHO05D007821 6.1e-266 920.2 453 92.9
BcaC03g14354 Brassica carinata HOM05D006017 ORTHO05D007821 5.1e-265 917.1 453 92.7
AL8G29200 Arabidopsis lyrata HOM05D006017 ORTHO05D007821 6.7e-265 916.8 455 92.7
Carub.0008s1436 Capsella rubella HOM05D006017 ORTHO05D007821 6.7e-265 916.8 453 92.7
BolC2t07897H Brassica oleracea HOM05D006017 ORTHO05D007821 1.1e-264 916.0 453 92.5
CARHR267270 Cardamine hirsuta HOM05D006017 ORTHO05D007821 9.7e-264 912.9 453 93.2
A02p10590 Brassica napus HOM05D006017 ORTHO05D007821 1.4e-262 909.1 446 92.8
BraA02t06124Z Brassica rapa HOM05D006017 ORTHO05D007821 1.4e-262 909.1 446 92.8
AT5G54080 Arabidopsis thaliana HOM05D006017 ORTHO05D007821 5.3e-262 907.1 455 91.9
THA.LOC104811882 Tarenaya hassleriana HOM05D006017 ORTHO05D007821 7.2e-251 870.2 440 90.0
Cpa.g.sc131.80 Carica papaya HOM05D006017 ORTHO05D007821 5.0e-236 820.8 431 86.1
Hma1.2p1_0416F.1_g148570 Hydrangea macrophylla HOM05D006017 ORTHO05D007821 1.2e-234 816.2 438 84.2
Sopen12g005880 Solanum pennellii HOM05D006017 ORTHO05D007821 6.1e-234 813.9 441 82.3
PGSC0003DMG400015330 Solanum tuberosum HOM05D006017 ORTHO05D007821 3.0e-233 811.6 441 82.3
Solyc12g014100.2 Solanum lycopersicum HOM05D006017 ORTHO05D007821 6.8e-233 810.4 441 81.9
Gorai.002G065000 Gossypium raimondii HOM05D006017 ORTHO05D007821 1.5e-232 809.3 443 83.5
TWI38G0439 Tripterygium wilfordii HOM05D006017 ORTHO05D007821 1.5e-232 809.3 439 83.4
Atru.chr2.2344 Acer truncatum HOM05D006017 ORTHO05D007821 2.0e-232 808.9 443 83.3
Thecc.07G102400 Theobroma cacao HOM05D006017 ORTHO05D007821 3.4e-232 808.1 433 85.0
Gohir.D01G045400 Gossypium hirsutum HOM05D006017 ORTHO05D007821 5.7e-232 807.4 443 83.3
Gohir.A01G059400 Gossypium hirsutum HOM05D006017 ORTHO05D007821 7.5e-232 807.0 443 83.5
ClCG07G009900 Citrullus lanatus HOM05D006017 ORTHO05D007821 1.7e-231 805.8 449 80.8
Rhsim04G0023700 Rhododendron simsii HOM05D006017 ORTHO05D007821 1.7e-231 805.8 437 83.5
MSTRG.14945 Avicennia marina HOM05D006017 ORTHO05D007821 3.7e-231 804.7 432 83.3
Dinv14956 Davidia involucrata HOM05D006017 ORTHO05D007821 3.7e-231 804.7 432 83.8
Manes.03G103900 Manihot esculenta HOM05D006017 ORTHO05D007821 1.1e-230 803.1 433 83.6
Peaxi162Scf00000g00262 Petunia axillaris HOM05D006017 ORTHO05D007821 5.4e-230 800.8 437 82.6
vmacro09508 Vaccinium macrocarpon HOM05D006017 ORTHO05D007821 5.4e-230 800.8 449 81.3
CSS0036883 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 1.6e-229 799.3 431 83.3
PSO541G6385 Papaver somniferum HOM05D006017 ORTHO05D007821 2.7e-229 798.5 441 82.5
Cfa019614 Carpinus fangiana HOM05D006017 ORTHO05D007821 3.5e-229 798.1 443 82.2
Actinidia18784 Actinidia chinensis HOM05D006017 ORTHO05D007821 1.3e-228 796.2 432 83.1
CsaV3_4G008430 Cucumis sativus L. HOM05D006017 ORTHO05D007821 2.3e-228 795.4 451 79.6
CiPaw.12G115700 Carya illinoinensis HOM05D006017 ORTHO05D007821 2.9e-228 795.0 441 81.4
DCAR_028453 Daucus carota HOM05D006017 ORTHO05D007821 2.9e-228 795.0 452 80.1
Lsat_1_v5_gn_9_98620 Lactuca sativa HOM05D006017 ORTHO05D007821 3.8e-228 794.7 430 82.6
Migut.M00760 Erythranthe guttata HOM05D006017 ORTHO05D007821 6.6e-228 793.9 431 82.8
RcHm_v2.0_Chr5g0031821 Rosa chinensis HOM05D006017 ORTHO05D007821 8.6e-228 793.5 435 81.1
Cc05_g11510 Coffea canephora HOM05D006017 ORTHO05D007821 3.3e-227 791.6 433 82.2
MBI07_g06432_MAGBIO Magnolia biondii HOM05D006017 ORTHO05D007821 3.3e-227 791.6 432 81.9
Sed0020976 Sechium edule HOM05D006017 ORTHO05D007821 3.3e-227 791.6 449 80.0
CANSAT35G1773 Cannabis sativa HOM05D006017 ORTHO05D007821 4.3e-227 791.2 437 82.4
Haze_09368 Corylus avellana HOM05D006017 ORTHO05D007821 5.6e-227 790.8 461 79.6
MELO3C016089.2 Cucumis melo HOM05D006017 ORTHO05D007821 9.5e-227 790.0 440 81.1
Prupe.4G172100 Prunus persica HOM05D006017 ORTHO05D007821 9.5e-227 790.0 435 80.7
ECA240G4517 Erigeron canadensis HOM05D006017 ORTHO05D007821 1.2e-226 789.6 432 81.7
FAN16G2700 Fragaria x ananassa HOM05D006017 ORTHO05D007821 1.2e-226 789.6 434 80.9
PGR083G0123 Punica granatum HOM05D006017 ORTHO05D007821 1.2e-226 789.6 435 82.8
GSVIVG01014248001 Vitis vinifera HOM05D006017 ORTHO05D007821 2.1e-226 788.9 438 81.7
Sc03g0010290 Simmondsia chinensis HOM05D006017 ORTHO05D007821 3.6e-226 788.1 440 80.9
Lj8A152T86 Lonicera japonica HOM05D006017 ORTHO05D007821 4.7e-226 787.7 433 82.0
FAN11G3087 Fragaria x ananassa HOM05D006017 ORTHO05D007821 6.1e-226 787.3 432 81.0
HanXRQChr03g0070991 Helianthus annuus HOM05D006017 ORTHO05D007821 8.0e-226 786.9 432 81.7
Eucgr.F01184 Eucalyptus grandis HOM05D006017 ORTHO05D007821 1.0e-225 786.6 430 83.5
Aqoxy1G02214 Aquilegia oxysepala HOM05D006017 ORTHO05D007821 2.3e-225 785.4 433 81.3
PSO675G4947 Papaver somniferum HOM05D006017 ORTHO05D007821 3.0e-225 785.0 443 80.8
Eucgr.F01185 Eucalyptus grandis HOM05D006017 ORTHO05D007821 1.2e-224 783.1 430 83.0
QL08p027671 Quercus lobata HOM05D006017 ORTHO05D007821 3.4e-224 781.6 437 80.8
CAN.G739.4 Capsicum annuum HOM05D006017 ORTHO05D007821 9.8e-224 780.0 471 75.8
EL10Ac4g08290 Beta vulgaris HOM05D006017 ORTHO05D007821 1.7e-223 779.2 435 81.1
CiPaw.11G165400 Carya illinoinensis HOM05D006017 ORTHO05D007821 4.9e-223 777.7 431 80.7
Lj3g0015312 Lotus japonicus HOM05D006017 ORTHO05D007821 1.1e-222 776.5 444 79.3
Medtr8g463280 Medicago truncatula HOM05D006017 ORTHO05D007821 1.1e-222 776.5 433 80.4
ATR0749G089 Amborella trichopoda HOM05D006017 ORTHO05D007821 1.4e-222 776.2 432 80.8
Thhalv10013691m.g Eutrema salsugineum HOM05D006017 ORTHO05D007821 3.2e-222 775.0 453 82.3
Psat4g138640 Pisum sativum HOM05D006017 ORTHO05D007821 4.6e-221 771.2 433 80.8
Ca_23058_v3 Cicer arietinum L. HOM05D006017 ORTHO05D007821 3.0e-220 768.5 433 80.4
Ca_30664_v3 Cicer arietinum L. HOM05D006017 ORTHO05D007821 3.0e-220 768.5 433 80.4
Phvul.011G148800 Phaseolus vulgaris HOM05D006017 ORTHO05D007821 3.9e-220 768.1 432 80.3
Potri.001G374100 Populus trichocarpa HOM05D006017 ORTHO05D007821 3.9e-220 768.1 440 79.5
Oeu061327.1 Olea europaea HOM05D006017 ORTHO05D007821 1.1e-219 766.5 468 74.8
Oeu061328.1 Olea europaea HOM05D006017 ORTHO05D007821 1.1e-219 766.5 468 74.8
arahy.Tifrunner.gnm1.ann1.DSNA77 Arachis hypogaea HOM05D006017 ORTHO05D007821 2.5e-219 765.4 433 78.8
Lalb_Chr03g0030841 Lupinus albus HOM05D006017 ORTHO05D007821 3.3e-219 765.0 448 77.2
AUR62019513 Chenopodium quinoa HOM05D006017 ORTHO05D007821 4.3e-219 764.6 437 79.6
Glyma.12G158600 Glycine max HOM05D006017 ORTHO05D007821 4.3e-219 764.6 432 80.3
FAN21G1753 Fragaria x ananassa HOM05D006017 ORTHO05D007821 1.2e-218 763.1 463 74.9
VMungo1127G0952 Vigna mungo HOM05D006017 ORTHO05D007821 1.2e-218 763.1 433 79.4
arahy.Tifrunner.gnm1.ann1.FV2XB3 Arachis hypogaea HOM05D006017 ORTHO05D007821 2.1e-218 762.3 433 78.8
Sabra16G0246500 Salix brachista HOM05D006017 ORTHO05D007821 3.4e-216 755.0 437 78.7
Nitab4.5_0003077g0020 Nicotiana tabacum HOM05D006017 ORTHO05D007821 2.2e-215 752.3 467 74.7
Os06g0103300 Oryza sativa ssp. japonica HOM05D006017 ORTHO05D007821 3.7e-215 751.5 450 76.7
unitig_46.g18314 Utricularia gibba HOM05D006017 ORTHO05D007821 2.7e-213 745.3 453 75.7
HPP92_003902 Vanilla planifolia HOM05D006017 ORTHO05D007821 3.5e-213 745.0 439 74.9
AUR62036125 Chenopodium quinoa HOM05D006017 ORTHO05D007821 1.0e-212 743.4 440 77.7
Zm00001eb379510 Zea mays HOM05D006017 ORTHO05D007821 6.8e-209 730.7 446 75.6
SGA_v2.0_scaffold73G24213 Striga asiatica HOM05D006017 ORTHO05D007821 5.4e-206 721.1 467 72.6
Ciclev10008509m.g Citrus clementina HOM05D006017 ORTHO05D007821 2.3e-204 715.7 379 86.0
Nn1g04303 Nelumbo nucifera HOM05D006017 ORTHO05D007821 5.1e-204 714.5 377 85.1
Ah.04g164440 Amaranthus hybridus HOM05D006017 ORTHO05D007821 2.8e-202 708.8 434 76.0
CDE02G3882 Ceratophyllum demersum HOM05D006017 ORTHO05D007821 1.4e-201 706.4 432 74.3
Mapoly0078s0002 Marchantia polymorpha HOM05D006017 ORTHO05D007821 1.6e-194 682.9 435 72.4
Hund22764 Selenicereus undatus HOM05D006017 ORTHO05D007821 9.0e-193 677.2 397 78.3
AagrBONN_evm.TU.Sc2ySwM_228.2578 Anthoceros agrestis HOM05D006017 ORTHO05D007821 1.4e-190 669.8 419 71.6
Pp3c16_940 Physcomitrium patens HOM05D006017 ORTHO05D007821 5.1e-188 661.4 439 69.0
Duzib170G0488 Durio zibethinus HOM05D006017 ORTHO05D007821 7.1e-182 641.0 453 68.4
Nitab4.5_0005445g0020 Nicotiana tabacum HOM05D006017 ORTHO05D007821 4.2e-174 615.1 415 69.9
SMO119G0176 Selaginella moellendorffii HOM05D006017 ORTHO05D007821 6.0e-173 611.3 434 64.5
FvH4_3g19020 Fragaria vesca HOM05D006017 ORTHO05D007821 2.4e-161 572.8 321 79.8
Hma1.2p1_0416F.1_g148580 Hydrangea macrophylla HOM05D006017 ORTHO05D007821 4.1e-161 572.0 306 83.7
Cre02.g091200 Chlamydomonas reinhardtii HOM05D006017 ORTHO05D007821 9.3e-158 560.8 438 61.2
SalBow8G4076 Salvia bowleyana HOM05D006017 ORTHO05D007821 1.9e-155 553.1 300 82.0
TPR.G22540 Trifolium pratense HOM05D006017 ORTHO05D007821 5.9e-152 541.6 377 68.4
PRCOL_00000185 Prasinoderma coloniale HOM05D006017 ORTHO05D007821 6.5e-151 538.1 456 58.1
MD03G1237500 Malus domestica HOM05D006017 ORTHO05D007821 1.7e-146 523.5 297 80.1
Glyma.06G234200 Glycine max HOM05D006017 ORTHO05D007821 1.0e-127 461.1 276 76.1
BcaC04g20394 Brassica carinata HOM05D006017 ORTHO05D007821 2.0e-91 340.5 434 50.0
CSS0003418 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 3.9e-79 299.7 196 72.4
C09p44170 Brassica napus HOM05D006017 ORTHO05D017343 3.1e-76 290.0 308 54.9
MD03G1237300 Malus domestica HOM05D006017 ORTHO05D007821 1.9e-70 270.8 158 75.3
FAN25G2436 Fragaria x ananassa HOM05D006017 ORTHO05D007821 8.1e-69 265.4 131 89.3
SEGI_01915 Sequoiadendron giganteum HOM05D006017 ORTHO05D007821 9.0e-68 261.9 177 69.5
Oeu061326.1 Olea europaea HOM05D006017 ORTHO05D007821 5.6e-62 242.7 132 83.3
TAR436G0001 Trochodendron aralioides HOM05D006017 ORTHO05D007821 3.7e-61 240.0 131 83.2
Glyma.06G234050 Glycine max HOM05D006017 ORTHO05D007821 1.4e-60 238.0 133 79.7
Rhsim07G0153900 Rhododendron simsii HOM05D006017 ORTHO05D000252 2.4e-60 237.3 221 53.8
Nitab4.5_0004022g0010 Nicotiana tabacum HOM05D006017 ORTHO05D007821 4.6e-56 223.0 120 85.0
A10p11370 Brassica napus HOM05D006017 ORTHO05D007821 3.2e-49 200.3 248 50.0
CSS0021316 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 1.1e-46 191.8 114 71.9
TWI38G1497 Tripterygium wilfordii HOM05D006017 ORTHO05D007821 2.2e-45 187.6 119 71.4
BolC9t57289H Brassica oleracea HOM05D006017 ORTHO05D104628 1.1e-33 148.7 182 48.9
SEGI_25954 Sequoiadendron giganteum HOM05D006017 ORTHO05D007821 2.2e-29 134.4 95 65.3
FAN25G2983 Fragaria x ananassa HOM05D006017 ORTHO05D007821 3.9e-23 113.6 90 56.7
arahy.Tifrunner.gnm1.ann1.EZ2Q4B Arachis hypogaea HOM05D006004 ORTHO05D006976 1.7e-21 108.2 61 75.4
SEGI_23248 Sequoiadendron giganteum HOM05D006017 ORTHO05D007821 4.8e-21 106.7 79 62.0
TWI38G0821 Tripterygium wilfordii HOM05D006017 ORTHO05D413584 1.4e-20 105.1 62 72.6
CSS0031230 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 1.7e-18 98.2 105 47.6
BraA10t43231Z Brassica rapa HOM05D006017 ORTHO05D017343 1.9e-17 94.7 68 66.2
HPP92_003866 Vanilla planifolia HOM05D006017 ORTHO05D007821 4.2e-09 67.0 55 58.2
Mapoly0432s0001 Marchantia polymorpha HOM05D019566 ORTHO05D017343 2.1e-08 64.7 43 65.1


User provided reference genes

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