Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG3G960 Aethionema arabicum HOM05D007528 ORTHO05D008503 1.1e-147 526.6 259 100.0
Thhalv10017145m.g Eutrema salsugineum HOM05D007528 ORTHO05D008503 1.6e-101 373.2 259 72.2
AL4G39090 Arabidopsis lyrata HOM05D007528 ORTHO05D008503 3.9e-100 368.6 263 70.7
AT2G41120 Arabidopsis thaliana HOM05D007528 ORTHO05D008503 1.2e-98 363.6 263 70.3
Sp4g23430 Schrenkiella parvula HOM05D007528 ORTHO05D008503 1.1e-97 360.5 263 70.0
Carub.0004s2343 Capsella rubella HOM05D007528 ORTHO05D008503 1.4e-97 360.1 263 69.2
BraA04t18594Z Brassica rapa HOM05D007528 ORTHO05D008503 1.6e-93 346.7 264 68.2
A04p31360 Brassica napus HOM05D007528 ORTHO05D008503 4.6e-93 345.1 264 67.8
C04p68770 Brassica napus HOM05D007528 ORTHO05D008503 1.0e-92 344.0 264 67.4
BolC4t28382H Brassica oleracea HOM05D007528 ORTHO05D008503 8.7e-92 340.9 264 66.7
BcaNung05626 Brassica carinata HOM05D007528 ORTHO05D008503 4.9e-87 325.1 268 64.9
THA.LOC104803254 Tarenaya hassleriana HOM05D007528 ORTHO05D008503 1.2e-85 320.5 268 63.1
CARHR136210 Cardamine hirsuta HOM05D007528 ORTHO05D008503 1.8e-81 306.6 268 63.1
Manes.09G073900 Manihot esculenta HOM05D007528 ORTHO05D008503 4.5e-64 248.8 201 59.7
COL.COLO4_08087 Corchorus olitorius HOM05D007528 ORTHO05D008503 1.3e-63 247.3 245 56.3
Gohir.D01G187600 Gossypium hirsutum HOM05D007528 ORTHO05D008503 1.3e-63 247.3 195 62.1
Gorai.002G231000 Gossypium raimondii HOM05D007528 ORTHO05D008503 2.9e-63 246.1 195 62.1
Cpa.g.sc33.188 Carica papaya HOM05D007528 ORTHO05D008503 6.5e-63 245.0 185 63.8
Gohir.A01G197400 Gossypium hirsutum HOM05D007528 ORTHO05D008503 2.5e-62 243.0 195 61.0
Duzib093G0275 Durio zibethinus HOM05D007528 ORTHO05D008503 4.2e-62 242.3 208 55.8
FAN28G2175 Fragaria x ananassa HOM05D007528 ORTHO05D008503 5.5e-62 241.9 196 60.7
QL11p009983 Quercus lobata HOM05D007528 ORTHO05D008503 5.5e-62 241.9 248 52.8
CANSAT21G0864 Cannabis sativa HOM05D007528 ORTHO05D008503 9.3e-62 241.1 241 56.0
FvH4_1g29750 Fragaria vesca HOM05D007528 ORTHO05D008503 1.2e-61 240.7 194 60.3
MD12G1013500 Malus domestica HOM05D007528 ORTHO05D008503 1.2e-61 240.7 178 65.2
RcHm_v2.0_Chr3g0495771 Rosa chinensis HOM05D007528 ORTHO05D008503 2.1e-61 240.0 242 52.1
Thecc.05G128400 Theobroma cacao HOM05D007528 ORTHO05D008503 2.1e-61 240.0 251 51.4
Sabra06G0018500 Salix brachista HOM05D007528 ORTHO05D008503 2.7e-61 239.6 240 50.0
SalBow6G5858 Salvia bowleyana HOM05D007528 ORTHO05D008503 2.7e-61 239.6 234 53.8
Ciclev10012580m.g Citrus clementina HOM05D007528 ORTHO05D008503 4.6e-61 238.8 237 52.7
TAR623G0014 Trochodendron aralioides HOM05D007528 ORTHO05D008503 4.6e-61 238.8 248 51.6
MSTRG.19743 Avicennia marina HOM05D007528 ORTHO05D008503 1.8e-60 236.9 184 59.2
SalBow6G5282 Salvia bowleyana HOM05D007528 ORTHO05D008503 1.8e-60 236.9 234 53.4
Nitab4.5_0000382g0060 Nicotiana tabacum HOM05D007528 ORTHO05D008503 2.3e-60 236.5 202 57.9
arahy.Tifrunner.gnm1.ann1.ARK2IX Arachis hypogaea HOM05D007528 ORTHO05D008503 3.0e-60 236.1 192 60.9
PGR042G1749 Punica granatum HOM05D007528 ORTHO05D008503 3.0e-60 236.1 248 53.2
DCAR_013508 Daucus carota HOM05D007528 ORTHO05D008503 3.9e-60 235.7 247 51.8
FAN26G0883 Fragaria x ananassa HOM05D007528 ORTHO05D008503 3.9e-60 235.7 257 51.0
Psat3g082960 Pisum sativum HOM05D007528 ORTHO05D008503 3.9e-60 235.7 231 53.2
Peaxi162Scf00183g00712 Petunia axillaris HOM05D007528 ORTHO05D008503 6.7e-60 235.0 203 57.1
Potri.006G025200 Populus trichocarpa HOM05D007528 ORTHO05D008503 6.7e-60 235.0 240 50.4
GSVIVG01025860001 Vitis vinifera HOM05D007528 ORTHO05D008503 6.7e-60 235.0 187 61.0
arahy.Tifrunner.gnm1.ann1.ZMQ31P Arachis hypogaea HOM05D007528 ORTHO05D008503 1.1e-59 234.2 179 63.7
MBI13_g02396_MAGBIO Magnolia biondii HOM05D007528 ORTHO05D008503 1.9e-59 233.4 250 52.0
Solyc03g044630.2 Solanum lycopersicum HOM05D007528 ORTHO05D008503 1.9e-59 233.4 204 56.4
Glyma.19G123400 Glycine max HOM05D007528 ORTHO05D008503 5.7e-59 231.9 253 50.6
Dinv14550 Davidia involucrata HOM05D007528 ORTHO05D008503 7.4e-59 231.5 186 59.1
Aqoxy2G00067 Aquilegia oxysepala HOM05D007528 ORTHO05D008503 9.7e-59 231.1 235 51.5
CDE04G0261 Ceratophyllum demersum HOM05D007528 ORTHO05D008503 9.7e-59 231.1 197 57.9
TPR.G23704 Trifolium pratense HOM05D007528 ORTHO05D008503 9.7e-59 231.1 249 49.4
PGSC0003DMG400019757 Solanum tuberosum HOM05D007528 ORTHO05D008503 1.3e-58 230.7 203 55.2
Atru.chr8.936 Acer truncatum HOM05D007528 ORTHO05D008503 1.6e-58 230.3 261 50.2
Nn7g37298 Nelumbo nucifera HOM05D007528 ORTHO05D008503 2.8e-58 229.6 235 52.3
Medtr7g088210 Medicago truncatula HOM05D007528 ORTHO05D008503 3.7e-58 229.2 226 52.2
Cc06_g21080 Coffea canephora HOM05D007528 ORTHO05D008503 4.8e-58 228.8 262 45.4
Lj1g0006388 Lotus japonicus HOM05D007528 ORTHO05D008503 6.3e-58 228.4 250 49.2
Ca_08340_v3 Cicer arietinum L. HOM05D007528 ORTHO05D008503 1.4e-57 227.3 246 50.0
Sed0015046 Sechium edule HOM05D007528 ORTHO05D008503 1.4e-57 227.3 193 59.1
HanXRQChr04g0125621 Helianthus annuus HOM05D007528 ORTHO05D008503 1.8e-57 226.9 250 50.8
Lalb_Chr22g0358311 Lupinus albus HOM05D007528 ORTHO05D008503 1.8e-57 226.9 233 50.2
Phvul.001G109000 Phaseolus vulgaris HOM05D007528 ORTHO05D008503 2.4e-57 226.5 245 50.6
CsaV3_3G039560 Cucumis sativus L. HOM05D007528 ORTHO05D008503 3.1e-57 226.1 250 52.4
ClCG10G016790 Citrullus lanatus HOM05D007528 ORTHO05D008503 5.3e-57 225.3 249 52.6
Eucgr.A02169 Eucalyptus grandis HOM05D007528 ORTHO05D008503 5.3e-57 225.3 225 54.2
ECA236G1579 Erigeron canadensis HOM05D007528 ORTHO05D008503 9.0e-57 224.6 188 58.5
EL10Ac5g11614 Beta vulgaris HOM05D007528 ORTHO05D008503 1.5e-56 223.8 207 52.2
CSS0027135 Camellia sinensis var. sinensis HOM05D007528 ORTHO05D008503 1.5e-56 223.8 250 49.6
PSO729G0248 Papaver somniferum HOM05D007528 ORTHO05D008503 1.5e-56 223.8 262 48.1
Oeu032951.1 Olea europaea HOM05D007528 ORTHO05D008503 2.0e-56 223.4 191 56.5
TWI63G0885 Tripterygium wilfordii HOM05D007528 ORTHO05D008503 2.6e-56 223.0 245 47.8
vmacro12911 Vaccinium macrocarpon HOM05D007528 ORTHO05D008503 2.6e-56 223.0 188 59.0
Lsat_1_v5_gn_8_83941 Lactuca sativa HOM05D007528 ORTHO05D008503 3.4e-56 222.6 176 60.2
Migut.J01598 Erythranthe guttata HOM05D007528 ORTHO05D008503 2.2e-55 219.9 179 58.7
Lj2A414T28 Lonicera japonica HOM05D007528 ORTHO05D008503 6.5e-55 218.4 208 54.8
ATR0307G122 Amborella trichopoda HOM05D007528 ORTHO05D008503 9.4e-54 214.5 195 52.8
Prupe.7G017900 Prunus persica HOM05D007528 ORTHO05D008503 2.1e-53 213.4 129 73.6
Haze_09241 Corylus avellana HOM05D007528 ORTHO05D006305 4.6e-53 212.2 208 52.9
BcaC02g12850 Brassica carinata HOM05D007528 ORTHO05D008503 2.0e-51 206.8 169 65.1
Os11g0130200 Oryza sativa ssp. japonica HOM05D007528 ORTHO05D008503 4.3e-51 205.7 213 50.2
Zm00001eb195960 Zea mays HOM05D007528 ORTHO05D008503 2.6e-48 196.4 192 51.6
SEGI_20851 Sequoiadendron giganteum HOM05D007528 ORTHO05D008503 1.0e-47 194.5 181 54.1
AagrBONN_evm.TU.Sc2ySwM_344.4238 Anthoceros agrestis HOM05D007528 ORTHO05D008503 1.4e-44 184.1 212 46.2
Mapoly0168s0009 Marchantia polymorpha HOM05D007528 ORTHO05D008503 1.4e-44 184.1 214 46.3
Pp3c21_6860 Physcomitrium patens HOM05D007528 ORTHO05D008503 3.0e-44 183.0 246 41.9
Rhsim10G0151800 Rhododendron simsii HOM05D007528 ORTHO05D008503 3.3e-43 179.5 137 63.5
CBR_g37627 Chara braunii HOM05D007528 ORTHO05D008503 5.7e-43 178.7 152 55.3
SMO266G0100 Selaginella moellendorffii HOM05D007528 ORTHO05D008503 1.7e-42 177.2 177 49.2
CiPaw.13G169300 Carya illinoinensis HOM05D007528 ORTHO05D008503 2.8e-42 176.4 170 50.6
FAN19G0638 Fragaria x ananassa HOM05D007528 ORTHO05D008503 6.3e-34 148.7 130 55.4
Sopen03g008910 Solanum pennellii HOM05D007528 ORTHO05D008503 7.2e-30 135.2 119 54.6
CAN.G1129.33 Capsicum annuum HOM05D007528 ORTHO05D008503 4.4e-27 125.9 118 50.8
unitig_21.g20663 Utricularia gibba HOM05D007528 ORTHO05D008503 2.0e-24 117.1 200 37.0
Glyma.03G119100 Glycine max HOM05D007528 ORTHO05D008503 2.5e-22 110.2 124 48.4
Glyma.03G119000 Glycine max HOM05D007528 ORTHO05D008503 1.3e-15 87.8 107 45.8
VMungo1383G2363 Vigna mungo HOM05D007528 ORTHO05D008503 9.5e-14 81.6 123 43.1
SEGI_18622 Sequoiadendron giganteum HOM05D007528 ORTHO05D008503 1.8e-12 77.4 57 57.9
FAN23G1305 Fragaria x ananassa HOM05D007528 ORTHO05D029410 5.9e-08 62.4 75 44.0


User provided reference genes

Program Settings