Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG3G9220 Aethionema arabicum HOM05D004948 ORTHO05D005824 2.3e-114 415.6 215 100.0
Sp6g15460 Schrenkiella parvula HOM05D004948 ORTHO05D005824 4.2e-92 341.7 215 82.3
AL8G28010 Arabidopsis lyrata HOM05D004948 ORTHO05D005824 7.2e-92 340.9 215 83.3
AT5G53310 Arabidopsis thaliana HOM05D004948 ORTHO05D005824 5.1e-90 334.7 215 82.8
Carub.0008s1349 Capsella rubella HOM05D004948 ORTHO05D005824 2.6e-89 332.4 221 80.5
Thhalv10014692m.g Eutrema salsugineum HOM05D004948 ORTHO05D005824 9.7e-89 330.5 206 83.5
CARHR266350 Cardamine hirsuta HOM05D004948 ORTHO05D005824 3.7e-88 328.6 217 81.1
BcaB05g22031 Brassica carinata HOM05D004948 ORTHO05D005824 9.1e-87 323.9 215 80.0
BcaC03g14431 Brassica carinata HOM05D004948 ORTHO05D005824 1.2e-86 323.6 215 79.5
C02p18470 Brassica napus HOM05D004948 ORTHO05D005824 1.2e-86 323.6 215 79.5
BolC2t07987H Brassica oleracea HOM05D004948 ORTHO05D005824 1.2e-86 323.6 215 79.5
A02p11140 Brassica napus HOM05D004948 ORTHO05D005824 6.5e-85 317.8 215 78.1
BraA02t06177Z Brassica rapa HOM05D004948 ORTHO05D005824 6.5e-85 317.8 215 78.1
Aa31LG5G23580 Aethionema arabicum HOM05D004948 ORTHO05D005824 4.7e-75 285.0 202 73.8
Aa31sc29G60 Aethionema arabicum HOM05D004948 ORTHO05D005824 8.8e-74 280.8 196 73.5
THA.LOC104800283 Tarenaya hassleriana HOM05D004948 ORTHO05D005824 2.7e-70 269.2 213 66.2
COL.COLO4_04803 Corchorus olitorius HOM05D004948 ORTHO05D005824 3.6e-67 258.8 213 60.1
SGA_v2.0_scaffold10G05268 Striga asiatica HOM05D004948 ORTHO05D005824 3.6e-67 258.8 209 64.1
Thecc.03G191700 Theobroma cacao HOM05D004948 ORTHO05D005824 6.1e-67 258.1 213 61.5
SalBow2G2244 Salvia bowleyana HOM05D004948 ORTHO05D005824 8.0e-67 257.7 212 63.2
Cpa.g.sc3.41 Carica papaya HOM05D004948 ORTHO05D005824 1.8e-66 256.5 216 60.2
Duzib068G0205 Durio zibethinus HOM05D004948 ORTHO05D005824 1.8e-66 256.5 213 59.6
Eucgr.A02670 Eucalyptus grandis HOM05D004948 ORTHO05D005824 4.0e-66 255.4 176 69.9
Duzib205G0398 Durio zibethinus HOM05D004948 ORTHO05D005824 6.8e-66 254.6 218 60.6
CiPaw.06G006800 Carya illinoinensis HOM05D004948 ORTHO05D005824 1.2e-65 253.8 213 58.7
MSTRG.65 Avicennia marina HOM05D004948 ORTHO05D005824 1.5e-65 253.4 214 60.3
PGR083G1298 Punica granatum HOM05D004948 ORTHO05D005824 3.4e-65 252.3 211 63.5
Hma1.2p1_0142F.1_g064080 Hydrangea macrophylla HOM05D004948 ORTHO05D005824 4.4e-65 251.9 217 59.0
PGR042G1790 Punica granatum HOM05D004948 ORTHO05D005824 7.5e-65 251.1 176 71.6
Actinidia34187 Actinidia chinensis HOM05D004948 ORTHO05D005824 9.8e-65 250.8 227 57.7
Prupe.2G306200 Prunus persica HOM05D004948 ORTHO05D005824 9.8e-65 250.8 215 60.0
Peaxi162Scf00904g00460 Petunia axillaris HOM05D004948 ORTHO05D005824 1.3e-64 250.4 215 59.1
Ciclev10005800m.g Citrus clementina HOM05D004948 ORTHO05D005824 2.8e-64 249.2 175 70.9
GSVIVG01028728001 Vitis vinifera HOM05D004948 ORTHO05D005824 2.8e-64 249.2 176 68.8
MBI07_g20438_MAGBIO Magnolia biondii HOM05D004948 ORTHO05D005824 4.9e-64 248.4 217 59.9
Dinv28347 Davidia involucrata HOM05D004948 ORTHO05D005824 6.3e-64 248.1 207 62.3
Migut.F01058 Erythranthe guttata HOM05D004948 ORTHO05D005824 6.3e-64 248.1 175 68.6
Solyc03g007480.3 Solanum lycopersicum HOM05D004948 ORTHO05D005824 1.1e-63 247.3 213 59.6
Atru.chr1.284 Acer truncatum HOM05D004948 ORTHO05D005824 1.4e-63 246.9 229 58.5
Oeu037114.1 Olea europaea HOM05D004948 ORTHO05D005824 1.8e-63 246.5 193 64.8
PGSC0003DMG400009097 Solanum tuberosum HOM05D004948 ORTHO05D005824 3.1e-63 245.7 213 59.6
Gohir.A12G252400 Gossypium hirsutum HOM05D004948 ORTHO05D005824 5.4e-63 245.0 212 57.5
Peaxi162Scf00618g00525 Petunia axillaris HOM05D004948 ORTHO05D005824 5.4e-63 245.0 209 60.3
Sopen03g003430 Solanum pennellii HOM05D004948 ORTHO05D005824 7.0e-63 244.6 208 59.6
Potri.012G033100 Populus trichocarpa HOM05D004948 ORTHO05D005824 1.6e-62 243.4 234 56.0
QL09p011186 Quercus lobata HOM05D004948 ORTHO05D005824 1.6e-62 243.4 175 68.0
vmacro06582 Vaccinium macrocarpon HOM05D004948 ORTHO05D005824 1.6e-62 243.4 176 65.9
ClCG01G000640 Citrullus lanatus HOM05D004948 ORTHO05D005824 2.0e-62 243.0 212 58.5
Dinv35301 Davidia involucrata HOM05D004948 ORTHO05D005824 2.0e-62 243.0 203 61.6
Cfa016354 Carpinus fangiana HOM05D004948 ORTHO05D005824 2.7e-62 242.7 218 58.3
MELO3C005865.2 Cucumis melo HOM05D004948 ORTHO05D005824 2.7e-62 242.7 213 58.2
FAN10G0476 Fragaria x ananassa HOM05D004948 ORTHO05D005824 3.5e-62 242.3 176 67.0
Gorai.008G271400 Gossypium raimondii HOM05D004948 ORTHO05D005824 3.5e-62 242.3 212 58.0
Sed0002242 Sechium edule HOM05D004948 ORTHO05D005824 3.5e-62 242.3 204 59.3
Solyc06g051820.4 Solanum lycopersicum HOM05D004948 ORTHO05D005824 5.9e-62 241.5 174 66.7
TAR629G2953 Trochodendron aralioides HOM05D004948 ORTHO05D005824 5.9e-62 241.5 226 55.8
FAN01G0333 Fragaria x ananassa HOM05D004948 ORTHO05D005824 7.7e-62 241.1 176 66.5
FAN06G2108 Fragaria x ananassa HOM05D004948 ORTHO05D005824 7.7e-62 241.1 176 66.5
MD01G1214200 Malus domestica HOM05D004948 ORTHO05D005824 7.7e-62 241.1 212 58.0
RcHm_v2.0_Chr1g0379991 Rosa chinensis HOM05D004948 ORTHO05D005824 7.7e-62 241.1 171 69.0
Gohir.D12G253100 Gossypium hirsutum HOM05D004948 ORTHO05D005824 1.0e-61 240.7 212 57.5
CsaV3_5G000730 Cucumis sativus L. HOM05D004948 ORTHO05D005824 1.3e-61 240.4 213 57.7
TAR636G2931 Trochodendron aralioides HOM05D004948 ORTHO05D005824 1.3e-61 240.4 227 56.8
CAN.G108.18 Capsicum annuum HOM05D004948 ORTHO05D005824 2.9e-61 239.2 202 59.4
FAN10G0469 Fragaria x ananassa HOM05D004948 ORTHO05D005824 2.9e-61 239.2 222 56.8
Sc19g0001090 Simmondsia chinensis HOM05D004948 ORTHO05D005824 3.8e-61 238.8 205 61.0
Potri.015G023400 Populus trichocarpa HOM05D004948 ORTHO05D005824 5.0e-61 238.4 224 58.0
Rhsim03G0197700 Rhododendron simsii HOM05D004948 ORTHO05D005824 5.0e-61 238.4 193 61.7
PGSC0003DMG400028892 Solanum tuberosum HOM05D004948 ORTHO05D005824 6.6e-61 238.0 211 56.9
FAN06G4897 Fragaria x ananassa HOM05D004948 ORTHO05D005824 8.6e-61 237.7 222 56.3
Sopen06g017830 Solanum pennellii HOM05D004948 ORTHO05D005824 1.5e-60 236.9 175 65.1
arahy.Tifrunner.gnm1.ann1.LZU7FF Arachis hypogaea HOM05D004948 ORTHO05D005824 1.9e-60 236.5 203 57.6
Lj1g0018821 Lotus japonicus HOM05D004948 ORTHO05D005824 3.3e-60 235.7 209 57.9
EL10Ac3g05356 Beta vulgaris HOM05D004948 ORTHO05D005824 7.3e-60 234.6 219 57.1
FvH4_7g30910 Fragaria vesca HOM05D004948 ORTHO05D005824 7.3e-60 234.6 184 63.6
AUR62021051 Chenopodium quinoa HOM05D004948 ORTHO05D005824 9.5e-60 234.2 207 58.5
CANSAT21G0873 Cannabis sativa HOM05D004948 ORTHO05D005824 1.2e-59 233.8 218 54.1
AUR62031482 Chenopodium quinoa HOM05D004948 ORTHO05D005824 1.6e-59 233.4 207 58.0
MD07G1283800 Malus domestica HOM05D004948 ORTHO05D005824 1.6e-59 233.4 217 57.6
DCAR_010636 Daucus carota HOM05D004948 ORTHO05D005824 2.8e-59 232.6 176 64.2
Lsat_1_v5_gn_8_6120 Lactuca sativa HOM05D004948 ORTHO05D005824 2.8e-59 232.6 206 56.8
Aqoxy5G04108 Aquilegia oxysepala HOM05D004948 ORTHO05D005824 3.6e-59 232.3 176 62.5
HanXRQChr13g0392981 Helianthus annuus HOM05D004948 ORTHO05D005824 4.7e-59 231.9 204 57.8
Haze_00103 Corylus avellana HOM05D004948 ORTHO05D005824 8.0e-59 231.1 228 53.1
ECA233G3864 Erigeron canadensis HOM05D004948 ORTHO05D005824 1.4e-58 230.3 203 58.1
Manes.06G156200 Manihot esculenta HOM05D004948 ORTHO05D005824 1.4e-58 230.3 216 55.1
Lalb_Chr04g0263671 Lupinus albus HOM05D004948 ORTHO05D005824 4.0e-58 228.8 176 60.2
BolC9t57186H Brassica oleracea HOM05D004948 ORTHO05D005824 8.9e-58 227.6 220 59.5
BcaC04g20470 Brassica carinata HOM05D004948 ORTHO05D005824 1.5e-57 226.9 220 59.5
Glyma.13G040600 Glycine max HOM05D004948 ORTHO05D005824 9.8e-57 224.2 201 57.2
TWI23G0483 Tripterygium wilfordii HOM05D004948 ORTHO05D005824 2.4e-55 219.5 171 59.6
Gohir.A09G183400 Gossypium hirsutum HOM05D004948 ORTHO05D005824 9.2e-55 217.6 164 62.8
ATR1132G055 Amborella trichopoda HOM05D004948 ORTHO05D005824 1.2e-54 217.2 175 57.1
Gohir.D09G178100 Gossypium hirsutum HOM05D004948 ORTHO05D005824 1.6e-54 216.9 164 62.8
Gorai.006G200200 Gossypium raimondii HOM05D004948 ORTHO05D005824 1.6e-54 216.9 164 62.8
Cc02_g01980 Coffea canephora HOM05D004948 ORTHO05D005824 3.5e-54 215.7 205 56.1
Manes.14G019200 Manihot esculenta HOM05D004948 ORTHO05D005824 3.5e-54 215.7 166 61.4
Actinidia31860 Actinidia chinensis HOM05D004948 ORTHO05D005824 5.9e-54 214.9 156 65.4
Duzib084G1367 Durio zibethinus HOM05D004948 ORTHO05D005824 5.9e-54 214.9 213 53.5
C09p43150 Brassica napus HOM05D004948 ORTHO05D005824 1.0e-53 214.2 210 59.0
Lj1g0003063 Lotus japonicus HOM05D004948 ORTHO05D005824 1.0e-53 214.2 154 64.9
Os01g0621700 Oryza sativa ssp. japonica HOM05D004948 ORTHO05D005824 2.3e-53 213.0 169 57.4
FAN03G1348 Fragaria x ananassa HOM05D004948 ORTHO05D005824 3.0e-53 212.6 176 60.8
Sabra12G0022300 Salix brachista HOM05D004948 ORTHO05D005824 6.6e-53 211.5 202 55.9
CDE04G0161 Ceratophyllum demersum HOM05D004948 ORTHO05D005824 1.5e-52 210.3 176 57.4
Hund27721 Selenicereus undatus HOM05D004948 ORTHO05D005824 7.3e-52 208.0 203 54.7
Hund27734 Selenicereus undatus HOM05D004948 ORTHO05D005824 7.3e-52 208.0 203 54.7
Nitab4.5_0001331g0180 Nicotiana tabacum HOM05D004948 ORTHO05D005824 9.5e-52 207.6 146 68.5
TPR.G33862 Trifolium pratense HOM05D004948 ORTHO05D005824 1.2e-51 207.2 155 61.9
Nn2g13651 Nelumbo nucifera HOM05D004948 ORTHO05D005824 1.6e-51 206.8 146 67.1
CAN.G204.5 Capsicum annuum HOM05D004948 ORTHO05D005824 2.8e-51 206.1 185 56.8
Ca_16670_v3 Cicer arietinum L. HOM05D004948 ORTHO05D005824 3.6e-51 205.7 206 51.0
HPP92_024433 Vanilla planifolia HOM05D004948 ORTHO05D005824 3.6e-51 205.7 155 61.3
Nitab4.5_0000472g0200 Nicotiana tabacum HOM05D004948 ORTHO05D005824 1.0e-50 204.1 183 57.9
Psat0s97g0080 Pisum sativum HOM05D004948 ORTHO05D005824 6.8e-50 201.4 155 61.3
Lalb_Chr08g0240671 Lupinus albus HOM05D004948 ORTHO05D005824 1.5e-49 200.3 157 61.1
arahy.Tifrunner.gnm1.ann1.MD6354 Arachis hypogaea HOM05D004948 ORTHO05D005824 5.8e-49 198.4 173 57.8
arahy.Tifrunner.gnm1.ann1.NIM4HJ Arachis hypogaea HOM05D004948 ORTHO05D005824 5.8e-49 198.4 156 59.6
Lj3A912T42 Lonicera japonica HOM05D004948 ORTHO05D005824 9.8e-49 197.6 188 53.7
Glyma.04G238900 Glycine max HOM05D004948 ORTHO05D005824 1.3e-48 197.2 155 62.6
Phvul.009G135700 Phaseolus vulgaris HOM05D004948 ORTHO05D005824 4.9e-48 195.3 155 61.3
DCAR_014528 Daucus carota HOM05D000121 ORTHO05D005824 6.4e-48 194.9 163 57.1
Medtr3g090670 Medicago truncatula HOM05D004948 ORTHO05D005824 1.4e-47 193.7 145 62.1
unitig_747.g21853 Utricularia gibba HOM05D004948 ORTHO05D005824 1.4e-47 193.7 156 60.3
Glyma.06G124800 Glycine max HOM05D004948 ORTHO05D005824 5.4e-47 191.8 190 53.7
Zm00001eb432120 Zea mays HOM05D004948 ORTHO05D005824 1.2e-46 190.7 145 62.1
VMungo1309G3087 Vigna mungo HOM05D004948 ORTHO05D005824 1.6e-46 190.3 186 51.6
DCAR_008996 Daucus carota HOM05D002473 ORTHO05D005824 3.5e-46 189.1 153 59.5
arahy.Tifrunner.gnm1.ann1.AMC2P5 Arachis hypogaea HOM05D004948 ORTHO05D005824 4.6e-46 188.7 171 55.0
Nitab4.5_0002176g0030 Nicotiana tabacum HOM05D004948 ORTHO05D005824 1.7e-45 186.8 128 70.3
Ah.07g206090 Amaranthus hybridus HOM05D004948 ORTHO05D005824 6.6e-45 184.9 136 64.7
TWI39G0355 Tripterygium wilfordii HOM05D004948 ORTHO05D005824 8.6e-45 184.5 137 62.8
Actinidia08617 Actinidia chinensis HOM05D004948 ORTHO05D005824 1.2e-43 180.6 144 63.9
Mapoly0143s0028 Marchantia polymorpha HOM05D004948 ORTHO05D005824 7.5e-41 171.4 210 43.8
CSS0002011 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 9.8e-41 171.0 118 67.8
BcaB08g35692 Brassica carinata HOM05D004948 ORTHO05D005824 7.1e-39 164.9 95 85.3
SHI54648 Sapria himalayana HOM05D004948 ORTHO05D005824 3.9e-37 159.1 163 52.1
SHI54754 Sapria himalayana HOM05D004948 ORTHO05D005824 3.9e-37 159.1 163 52.1
Pp3c8_900 Physcomitrium patens HOM05D004948 ORTHO05D005824 5.1e-37 158.7 180 45.0
AagrBONN_evm.TU.Sc2ySwM_362.1882 Anthoceros agrestis HOM05D004948 ORTHO05D005824 8.6e-37 157.9 189 45.0
SMO361G0401 Selaginella moellendorffii HOM05D004948 ORTHO05D005824 2.5e-36 156.4 166 44.0
SEGI_09652 Sequoiadendron giganteum HOM05D004948 ORTHO05D005824 4.3e-36 155.6 137 52.6
CSS0025713 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 1.2e-35 154.1 106 68.9
CSS0008262 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 3.6e-35 152.5 106 67.9
Lj1P1012T60 Lonicera japonica HOM05D004948 ORTHO05D005824 4.9e-32 142.1 108 63.0
CBR_g39340 Chara braunii HOM05D004948 ORTHO05D005824 4.6e-30 135.6 155 40.6
Lalb_Chr23g0271431 Lupinus albus HOM05D004948 ORTHO05D005824 3.3e-20 102.8 157 40.8
MCO05G504 Micromonas commoda HOM05D004948 ORTHO05D005824 3.8e-16 89.4 193 31.1


User provided reference genes

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