Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG3G9160 Aethionema arabicum HOM05D005400 ORTHO05D006668 0.0e+00 2221.8 1182 100.0
AL8G27410 Arabidopsis lyrata HOM05D005400 ORTHO05D006668 0.0e+00 1757.7 1186 78.2
AT5G52910 Arabidopsis thaliana HOM05D005400 ORTHO05D006668 0.0e+00 1747.3 1184 77.8
Thhalv10012488m.g Eutrema salsugineum HOM05D005400 ORTHO05D006668 0.0e+00 1713.0 1184 76.6
Carub.0008s1311 Capsella rubella HOM05D005400 ORTHO05D006668 0.0e+00 1708.3 1193 75.9
CARHR265900 Cardamine hirsuta HOM05D005400 ORTHO05D006668 0.0e+00 1701.4 1181 76.0
BcaB08g35655 Brassica carinata HOM05D005400 ORTHO05D006668 0.0e+00 1693.3 1186 76.1
A10p10420 Brassica napus HOM05D005400 ORTHO05D006668 0.0e+00 1684.1 1186 75.7
BraA10t43124Z Brassica rapa HOM05D005400 ORTHO05D006668 0.0e+00 1682.2 1186 75.5
C09p42650 Brassica napus HOM05D005400 ORTHO05D006668 0.0e+00 1678.3 1187 75.4
BolC9t57141H Brassica oleracea HOM05D005400 ORTHO05D006668 0.0e+00 1678.3 1187 75.4
BcaC04g20520 Brassica carinata HOM05D005400 ORTHO05D006668 0.0e+00 1676.4 1187 75.3
Sp6g15090 Schrenkiella parvula HOM05D005400 ORTHO05D006668 0.0e+00 1674.8 1187 74.8
THA.LOC104811936 Tarenaya hassleriana HOM05D005400 ORTHO05D006668 0.0e+00 1493.0 1178 68.7
Ciclev10004177m.g Citrus clementina HOM05D005400 ORTHO05D006668 0.0e+00 1125.2 1213 53.6
QL09p011755 Quercus lobata HOM05D005400 ORTHO05D006668 0.0e+00 1120.5 1046 57.9
MD01G1212700 Malus domestica HOM05D005400 ORTHO05D006668 0.0e+00 1109.7 1081 56.6
Thecc.03G189100 Theobroma cacao HOM05D005400 ORTHO05D006668 0.0e+00 1108.6 1205 53.7
Manes.06G155000 Manihot esculenta HOM05D005400 ORTHO05D006668 0.0e+00 1102.0 1285 51.8
GSVIVG01028757001 Vitis vinifera HOM05D005400 ORTHO05D006668 0.0e+00 1089.7 1092 55.7
Sabra15G0018800 Salix brachista HOM05D005400 ORTHO05D006668 0.0e+00 1088.9 1061 57.6
Sabra15G0021300 Salix brachista HOM05D005400 ORTHO05D006668 0.0e+00 1083.2 1272 51.1
CANSAT21G0517 Cannabis sativa HOM05D005400 ORTHO05D006668 2.7e-310 1068.9 1088 55.1
PGR042G3191 Punica granatum HOM05D005400 ORTHO05D006668 6.1e-310 1067.8 1223 52.2
TWI14G1289 Tripterygium wilfordii HOM05D005400 ORTHO05D006668 6.1e-310 1067.8 1081 55.2
Gohir.D12G254600 Gossypium hirsutum HOM05D005400 ORTHO05D006668 4.4e-308 1061.6 1228 50.7
ClCG01G000730 Citrullus lanatus HOM05D005400 ORTHO05D006668 4.1e-306 1055.0 1087 55.0
Lalb_Chr06g0161421 Lupinus albus HOM05D005400 ORTHO05D006668 9.1e-306 1053.9 1082 54.3
Glyma.10G227900 Glycine max HOM05D005400 ORTHO05D006668 1.1e-303 1047.0 1078 54.5
Potri.015G024300 Populus trichocarpa HOM05D005400 ORTHO05D006668 1.1e-303 1047.0 1060 54.9
Actinidia34175 Actinidia chinensis HOM05D005400 ORTHO05D006668 2.5e-303 1045.8 1228 49.1
Glyma.20G164400 Glycine max HOM05D005400 ORTHO05D006668 3.3e-303 1045.4 1060 54.2
Cpa.g.sc3.16 Carica papaya HOM05D005400 ORTHO05D006668 1.6e-302 1043.1 1322 48.8
Cfa016337 Carpinus fangiana HOM05D005400 ORTHO05D006668 3.6e-302 1042.0 1081 54.2
Phvul.007G077600 Phaseolus vulgaris HOM05D005400 ORTHO05D006668 2.3e-301 1039.3 1069 54.0
arahy.Tifrunner.gnm1.ann1.E9FCC2 Arachis hypogaea HOM05D005400 ORTHO05D006668 5.2e-301 1038.1 1078 54.4
Nn1g01753 Nelumbo nucifera HOM05D005400 ORTHO05D006668 1.7e-299 1033.1 1274 47.5
TPR.G7748 Trifolium pratense HOM05D005400 ORTHO05D006668 8.3e-299 1030.8 1114 52.5
Eucgr.A02677 Eucalyptus grandis HOM05D005400 ORTHO05D006668 2.7e-297 1025.8 1073 54.5
Gorai.008G272300 Gossypium raimondii HOM05D005400 ORTHO05D006668 1.5e-295 1020.0 1228 49.3
TAR374G0725 Trochodendron aralioides HOM05D005400 ORTHO05D006668 4.3e-295 1018.5 1284 48.3
vmacro06593 Vaccinium macrocarpon HOM05D005400 ORTHO05D006668 4.3e-295 1018.5 1264 47.5
Medtr1g099370 Medicago truncatula HOM05D005400 ORTHO05D006668 1.0e-293 1013.8 1126 51.2
arahy.Tifrunner.gnm1.ann1.B3EP0P Arachis hypogaea HOM05D005400 ORTHO05D006668 3.0e-293 1012.3 1086 53.4
Dinv35292 Davidia involucrata HOM05D005400 ORTHO05D006668 2.0e-292 1009.6 1223 49.2
Duzib205G0693 Durio zibethinus HOM05D005400 ORTHO05D006668 9.8e-292 1007.3 995 56.4
MBI06_g29320_MAGBIO Magnolia biondii HOM05D005400 ORTHO05D006668 1.3e-291 1006.9 1196 49.0
CiPaw.05G259500 Carya illinoinensis HOM05D005400 ORTHO05D006668 3.7e-291 1005.4 954 56.8
Cc02_g02120 Coffea canephora HOM05D005400 ORTHO05D006668 9.2e-290 1000.7 1064 52.5
FvH4_7g30740 Fragaria vesca HOM05D005400 ORTHO05D006668 2.0e-289 999.6 1075 53.2
RcHm_v2.0_Chr1g0379691 Rosa chinensis HOM05D005400 ORTHO05D006668 3.5e-289 998.8 1077 53.7
Lj5g0007861 Lotus japonicus HOM05D005400 ORTHO05D006668 1.1e-285 987.3 1082 51.3
Psat6g194880 Pisum sativum HOM05D005400 ORTHO05D006668 4.0e-285 985.3 1204 48.3
FAN06G4050 Fragaria x ananassa HOM05D005400 ORTHO05D006668 5.8e-284 981.5 1078 52.6
FAN06G5036 Fragaria x ananassa HOM05D005400 ORTHO05D006668 7.5e-284 981.1 1078 52.7
VMungo0720G2624 Vigna mungo HOM05D005400 ORTHO05D006668 1.3e-283 980.3 1091 50.7
CsaV3_5G000860 Cucumis sativus L. HOM05D005400 ORTHO05D006668 2.2e-283 979.5 1080 52.3
Rhsim03G0196700 Rhododendron simsii HOM05D005400 ORTHO05D006668 2.9e-283 979.2 1269 46.3
SalBow4G2614 Salvia bowleyana HOM05D005400 ORTHO05D006668 2.9e-283 979.2 1069 52.2
MSTRG.27059 Avicennia marina HOM05D005400 ORTHO05D006668 1.4e-282 976.9 1271 46.7
Sc13g0009410 Simmondsia chinensis HOM05D005400 ORTHO05D006668 1.2e-281 973.8 1257 47.7
MELO3C005855.2 Cucumis melo HOM05D005400 ORTHO05D006668 3.5e-281 972.2 1089 51.6
Migut.F00258 Erythranthe guttata HOM05D005400 ORTHO05D006668 6.2e-278 961.4 1079 51.2
Sed0025455 Sechium edule HOM05D005400 ORTHO05D006668 1.3e-275 953.7 1229 47.9
PSO170G5128 Papaver somniferum HOM05D005400 ORTHO05D006668 1.4e-274 950.3 1284 45.9
ECA246G1245 Erigeron canadensis HOM05D005400 ORTHO05D006668 7.1e-274 948.0 1257 46.1
Hund04816 Selenicereus undatus HOM05D005400 ORTHO05D006668 2.1e-273 946.4 1271 44.8
Oeu037127.2 Olea europaea HOM05D005400 ORTHO05D006668 3.5e-273 945.7 1162 48.0
HanXRQChr05g0158761 Helianthus annuus HOM05D005400 ORTHO05D006668 1.5e-271 940.3 1093 49.4
SGA_v2.0_scaffold44G16767 Striga asiatica HOM05D005400 ORTHO05D006668 1.4e-269 933.7 1204 47.3
DCAR_020293 Daucus carota HOM05D005400 ORTHO05D006668 1.8e-269 933.3 1134 47.9
EL10Ac3g05372 Beta vulgaris HOM05D005400 ORTHO05D006668 3.1e-269 932.6 1112 48.4
CAN.G108.2 Capsicum annuum HOM05D005400 ORTHO05D006668 4.0e-269 932.2 1119 48.4
FAN03G3290 Fragaria x ananassa HOM05D005400 ORTHO05D006668 5.2e-269 931.8 1073 51.2
Hma1.2p1_0142F.1_g064190 Hydrangea macrophylla HOM05D005400 ORTHO05D006668 5.2e-269 931.8 923 55.8
CSS0023888 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 1.2e-268 930.6 1197 47.0
Prupe.2G304900 Prunus persica HOM05D005400 ORTHO05D006668 6.4e-267 924.9 1168 48.6
Sopen03g003730 Solanum pennellii HOM05D005400 ORTHO05D006668 5.4e-266 921.8 1127 47.8
Solyc03g007800.3 Solanum lycopersicum HOM05D005400 ORTHO05D006668 3.9e-264 915.6 1313 43.6
Atru.BG.163.p Acer truncatum HOM05D005400 ORTHO05D006668 1.1e-263 914.1 914 56.3
COL.COLO4_30250 Corchorus olitorius HOM05D005400 ORTHO05D006668 1.2e-262 910.6 1224 46.0
FAN01G1802 Fragaria x ananassa HOM05D005400 ORTHO05D006668 3.4e-260 902.5 1085 50.4
Lsat_1_v5_gn_5_37621 Lactuca sativa HOM05D005400 ORTHO05D006668 5.4e-258 895.2 1055 49.2
Peaxi162Scf00904g00467 Petunia axillaris HOM05D005400 ORTHO05D006668 1.6e-257 893.6 1121 46.7
Aqoxy5G04046 Aquilegia oxysepala HOM05D005400 ORTHO05D006668 2.1e-254 883.2 1242 44.7
Nitab4.5_0002340g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 1.7e-243 847.0 1134 45.1
CSS0002454 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 2.2e-243 846.7 938 50.2
Gohir.A12G254700 Gossypium hirsutum HOM05D005400 ORTHO05D006668 4.6e-241 839.0 1128 45.8
Haze_00088 Corylus avellana HOM05D005400 ORTHO05D006668 2.5e-239 833.2 1293 42.6
Ca_10700_v3 Cicer arietinum L. HOM05D005400 ORTHO05D006668 7.6e-236 821.6 1095 45.6
Zm00001eb296310 Zea mays HOM05D005400 ORTHO05D006668 3.0e-232 809.7 1020 46.8
AUR62021073 Chenopodium quinoa HOM05D005400 ORTHO05D006668 7.7e-228 795.0 1131 43.7
Os05g0210500 Oryza sativa ssp. japonica HOM05D005400 ORTHO05D006668 7.9e-225 785.0 973 46.4
ATR0721G161 Amborella trichopoda HOM05D005400 ORTHO05D006668 1.8e-224 783.9 1079 43.7
Lj3C915G3 Lonicera japonica HOM05D005400 ORTHO05D006668 2.2e-219 766.9 1129 44.9
AUR62031458 Chenopodium quinoa HOM05D005400 ORTHO05D006668 2.8e-214 750.0 1228 41.0
SEGI_11166 Sequoiadendron giganteum HOM05D005400 ORTHO05D006668 2.8e-214 750.0 1131 42.1
Ah.07g206200 Amaranthus hybridus HOM05D005400 ORTHO05D006668 6.7e-208 728.8 1206 40.5
SHI13742 Sapria himalayana HOM05D005400 ORTHO05D006668 1.6e-201 707.6 959 46.2
Nitab4.5_0001748g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 4.5e-196 689.5 965 42.8
unitig_46.g18810 Utricularia gibba HOM05D005400 ORTHO05D006668 2.5e-194 683.7 1162 40.3
Hma1.2p1_0142F.1_g064180 Hydrangea macrophylla HOM05D005400 ORTHO05D006668 1.8e-192 677.6 550 61.8
CDE03G0155 Ceratophyllum demersum HOM05D005400 ORTHO05D006668 3.0e-184 650.2 1208 38.2
Atru.chr1.311 Acer truncatum HOM05D005400 ORTHO05D006668 2.0e-183 647.5 514 66.1
AagrBONN_evm.TU.Sc2ySwM_362.1589 Anthoceros agrestis HOM05D005400 ORTHO05D006668 7.5e-175 619.0 961 40.0
PGSC0003DMG400006589 Solanum tuberosum HOM05D005400 ORTHO05D006668 1.8e-168 597.8 523 58.7
Mapoly0089s0007 Marchantia polymorpha HOM05D005400 ORTHO05D006668 4.6e-164 583.2 1222 34.0
Pp3c8_21590 Physcomitrium patens HOM05D005400 ORTHO05D006668 5.8e-151 539.7 1188 33.6
HPP92_007648 Vanilla planifolia HOM05D005400 ORTHO05D006668 6.0e-132 476.5 626 44.2
SMO353G0144 Selaginella moellendorffii HOM05D005400 ORTHO05D006668 3.9e-107 394.0 929 31.1
PGSC0003DMG400006588 Solanum tuberosum HOM05D005400 ORTHO05D006668 7.2e-85 320.1 507 40.4
FAN10G3192 Fragaria x ananassa HOM05D005400 ORTHO05D006668 2.6e-74 285.0 251 59.8
QL09p011899 Quercus lobata HOM05D005400 ORTHO05D006668 1.0e-67 263.1 302 51.0
CBR_g32347 Chara braunii HOM05D000019 ORTHO05D000353 5.6e-53 214.2 263 43.7
GSVIVG01028763001 Vitis vinifera HOM05D005400 ORTHO05D006668 5.6e-53 214.2 168 62.5
RcHm_v2.0_Chr5g0072581 Rosa chinensis HOM05D005400 ORTHO05D006668 5.8e-50 204.1 178 57.3
Lj3C915T0 Lonicera japonica HOM05D005400 ORTHO05D006668 4.7e-44 184.5 137 70.1
PRCOL_00002573 Prasinoderma coloniale HOM05D005400 ORTHO05D006668 1.9e-40 172.6 618 27.0
CDE04G2330 Ceratophyllum demersum HOM05D005400 ORTHO05D006668 2.0e-34 152.5 105 66.7
arahy.Tifrunner.gnm1.ann1.FE5R37 Arachis hypogaea HOM05D005400 ORTHO05D006668 3.9e-30 138.3 97 69.1
GSVIVG01028765001 Vitis vinifera HOM05D005400 ORTHO05D006668 1.9e-29 136.0 124 54.8
arahy.Tifrunner.gnm1.ann1.3F6PU2 Arachis hypogaea HOM05D005400 ORTHO05D006668 4.8e-28 131.3 106 62.3
Cre06.g284850 Chlamydomonas reinhardtii HOM05D005400 ORTHO05D006668 1.2e-26 126.7 218 36.7
SHI13743 Sapria himalayana HOM05D005400 ORTHO05D006668 6.4e-25 120.9 84 64.3
Glyma.14G176200 Glycine max HOM05D005400 ORTHO05D006668 1.3e-20 106.7 132 45.5
Lsat_1_v5_gn_8_88601 Lactuca sativa HOM05D005400 ORTHO05D006668 5.3e-19 101.3 121 46.3
FAN06G3414 Fragaria x ananassa HOM05D005400 ORTHO05D006668 7.6e-18 97.4 119 47.1
QL09p011903 Quercus lobata HOM05D005400 ORTHO05D006668 9.9e-18 97.1 131 46.6
GSVIVG01028761001 Vitis vinifera HOM05D005400 ORTHO05D006668 1.7e-17 96.3 412 28.4
arahy.Tifrunner.gnm1.ann1.58WBAP Arachis hypogaea HOM05D005400 ORTHO05D006668 2.9e-17 95.5 115 47.0
FAN06G1858 Fragaria x ananassa HOM05D005400 ORTHO05D006668 4.9e-17 94.7 124 46.0
Glyma.03G109600 Glycine max HOM05D005400 ORTHO05D006668 5.5e-16 91.3 72 61.1
SHI13741 Sapria himalayana HOM05D005400 ORTHO05D006668 4.5e-10 71.6 74 45.9
FAN08G2853 Fragaria x ananassa HOM05D010729 ORTHO05D011897 1.7e-09 69.7 105 38.1
SMO171G0132 Selaginella moellendorffii HOM05D005400 ORTHO05D006668 6.5e-09 67.8 94 39.4
Dinv07570 Davidia involucrata HOM05D000001 ORTHO05D000003 4.2e-08 65.1 56 55.4
FvH4_7g30961 Fragaria vesca HOM05D005400 ORTHO05D011897 1.8e-06 59.7 63 44.4


User provided reference genes

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