Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG3G9130 Aethionema arabicum HOM05D006306 ORTHO05D007912 4.0e-148 528.1 273 100.0
Aa31LG3G9120 Aethionema arabicum HOM05D006306 ORTHO05D007912 5.0e-90 335.1 201 86.1
Carub.0008s1304 Capsella rubella HOM05D006306 ORTHO05D007912 1.3e-74 283.9 265 59.6
AT5G52880 Arabidopsis thaliana HOM05D006306 ORTHO05D007912 1.7e-74 283.5 269 60.2
AL8G27340 Arabidopsis lyrata HOM05D006306 ORTHO05D007912 9.5e-73 277.7 269 60.2
BcaC04g20532 Brassica carinata HOM05D006306 ORTHO05D007912 7.5e-70 268.1 265 57.7
BolC9t57127H Brassica oleracea HOM05D006306 ORTHO05D007912 9.8e-70 267.7 265 57.7
BcaB08g35641 Brassica carinata HOM05D006306 ORTHO05D007912 2.4e-68 263.1 264 56.1
THA.LOC104825120 Tarenaya hassleriana HOM05D006306 ORTHO05D007912 6.8e-63 245.0 271 52.4
CARHR265820 Cardamine hirsuta HOM05D006306 ORTHO05D007912 8.9e-55 218.0 208 58.2
Thhalv10014697m.g Eutrema salsugineum HOM05D006306 ORTHO05D007912 1.0e-50 204.5 208 55.8
C09p42490 Brassica napus HOM05D006306 ORTHO05D007912 5.1e-50 202.2 208 55.8
BcaC04g20531 Brassica carinata HOM05D006306 ORTHO05D007912 1.5e-49 200.7 232 50.0
Sp6g15040 Schrenkiella parvula HOM05D006306 ORTHO05D007912 9.6e-49 198.0 278 46.0
Atru.chr1.326 Acer truncatum HOM05D006306 ORTHO05D007912 3.6e-48 196.1 290 43.8
Ciclev10005526m.g Citrus clementina HOM05D006306 ORTHO05D007912 4.4e-46 189.1 294 42.2
MD01G1211200 Malus domestica HOM05D006306 ORTHO05D007912 3.8e-45 186.0 285 41.8
BcaB08g35646 Brassica carinata HOM05D006306 ORTHO05D007912 6.4e-45 185.3 253 47.4
FvH4_7g30600 Fragaria vesca HOM05D006306 ORTHO05D007912 1.1e-44 184.5 268 44.4
FAN06G4689 Fragaria x ananassa HOM05D006306 ORTHO05D007912 1.1e-44 184.5 268 44.4
COL.COLO4_30262 Corchorus olitorius HOM05D006306 ORTHO05D007912 1.4e-44 184.1 294 41.5
FAN06G4805 Fragaria x ananassa HOM05D006306 ORTHO05D007912 4.2e-44 182.6 268 44.0
RcHm_v2.0_Chr1g0379511 Rosa chinensis HOM05D006306 ORTHO05D007912 5.4e-44 182.2 267 43.4
CiPaw.06G005500 Carya illinoinensis HOM05D006306 ORTHO05D007912 7.1e-44 181.8 293 41.6
Prupe.2G303600 Prunus persica HOM05D006306 ORTHO05D007912 7.1e-44 181.8 265 43.4
AUR62021081 Chenopodium quinoa HOM05D006306 ORTHO05D007912 2.1e-43 180.3 295 38.0
FAN01G1106 Fragaria x ananassa HOM05D006306 ORTHO05D007912 2.1e-43 180.3 268 43.7
FAN10G3235 Fragaria x ananassa HOM05D006306 ORTHO05D007912 3.5e-43 179.5 268 44.0
Hund11704 Selenicereus undatus HOM05D006306 ORTHO05D007912 3.5e-43 179.5 295 37.3
Gorai.008G272800 Gossypium raimondii HOM05D006306 ORTHO05D007912 4.6e-43 179.1 293 38.6
Duzib084G0050 Durio zibethinus HOM05D006306 ORTHO05D007912 6.0e-43 178.7 303 37.6
Hma1.2p1_0142F.1_g064400 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 2.3e-42 176.8 287 39.4
MBI06_g33547_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 2.3e-42 176.8 284 41.2
Cpa.g.sc3.9 Carica papaya HOM05D006306 ORTHO05D007912 3.0e-42 176.4 293 39.9
GSVIVG01028794001 Vitis vinifera HOM05D006306 ORTHO05D007912 3.9e-42 176.0 272 40.1
CSS0007539 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 6.6e-42 175.3 297 38.7
Potri.012G035500 Populus trichocarpa HOM05D006306 ORTHO05D007912 8.7e-42 174.9 276 41.3
RhsimUnG0097700 Rhododendron simsii HOM05D006306 ORTHO05D007912 1.5e-41 174.1 291 37.8
CANSAT21G1468 Cannabis sativa HOM05D006306 ORTHO05D007912 1.9e-41 173.7 286 39.2
Migut.F00264 Erythranthe guttata HOM05D006306 ORTHO05D007912 1.9e-41 173.7 281 40.2
Sc19g0001030 Simmondsia chinensis HOM05D006306 ORTHO05D007912 1.9e-41 173.7 300 37.0
TAR636G3656 Trochodendron aralioides HOM05D006306 ORTHO05D007912 1.9e-41 173.7 294 40.8
PGR142G3937 Punica granatum HOM05D006306 ORTHO05D007912 2.5e-41 173.3 307 41.4
Sed0005488 Sechium edule HOM05D006306 ORTHO05D007912 4.3e-41 172.6 285 40.4
Peaxi162Scf00057g00026 Petunia axillaris HOM05D006306 ORTHO05D007912 5.6e-41 172.2 285 40.7
Sabra12G0024000 Salix brachista HOM05D006306 ORTHO05D007912 9.6e-41 171.4 273 41.4
Psat6g195200 Pisum sativum HOM05D006306 ORTHO05D007912 1.6e-40 170.6 296 39.5
TWI39G0038 Tripterygium wilfordii HOM05D006306 ORTHO05D007912 2.1e-40 170.2 287 37.6
Eucgr.K00302 Eucalyptus grandis HOM05D006306 ORTHO05D007912 2.8e-40 169.9 292 37.0
ClCG01G000830 Citrullus lanatus HOM05D006306 ORTHO05D007912 3.6e-40 169.5 283 39.9
FAN10G1990 Fragaria x ananassa HOM05D006306 ORTHO05D007912 4.8e-40 169.1 300 39.3
Rhsim03G0195700 Rhododendron simsii HOM05D006306 ORTHO05D007912 4.8e-40 169.1 290 37.2
Gohir.A12G254499 Gossypium hirsutum HOM05D006306 ORTHO05D007912 1.1e-39 167.9 272 39.7
PSO063G5557 Papaver somniferum HOM05D006306 ORTHO05D007912 1.1e-39 167.9 300 38.7
PSO170G4684 Papaver somniferum HOM05D006306 ORTHO05D007912 1.4e-39 167.5 300 37.7
Ca_10706_v3 Cicer arietinum L. HOM05D006306 ORTHO05D007912 1.8e-39 167.2 261 40.2
Cfa016324 Carpinus fangiana HOM05D006306 ORTHO05D007912 2.4e-39 166.8 278 41.0
CsaV3_5G000970 Cucumis sativus L. HOM05D006306 ORTHO05D007912 5.3e-39 165.6 285 40.0
Cc02_g02170 Coffea canephora HOM05D006306 ORTHO05D007912 1.5e-38 164.1 276 38.8
Nitab4.5_0008026g0020 Nicotiana tabacum HOM05D006306 ORTHO05D007912 2.0e-38 163.7 262 41.6
Aqoxy5G04066 Aquilegia oxysepala HOM05D006306 ORTHO05D007912 2.6e-38 163.3 300 35.7
QL09p012095 Quercus lobata HOM05D006306 ORTHO05D007912 2.6e-38 163.3 289 41.2
BolC9t57131H Brassica oleracea HOM05D006306 ORTHO05D007912 4.4e-38 162.5 178 53.4
Nitab4.5_0001748g0060 Nicotiana tabacum HOM05D006306 ORTHO05D007912 5.8e-38 162.2 284 40.1
Sopen03g003670 Solanum pennellii HOM05D006306 ORTHO05D007912 5.8e-38 162.2 287 39.4
VMungo0720G2617 Vigna mungo HOM05D006306 ORTHO05D007912 5.8e-38 162.2 288 37.8
Solyc03g007750.3 Solanum lycopersicum HOM05D006306 ORTHO05D007912 7.6e-38 161.8 287 39.7
ATR1131G020 Amborella trichopoda HOM05D006306 ORTHO05D007912 9.9e-38 161.4 264 39.4
CAN.G926.4 Capsicum annuum HOM05D006306 ORTHO05D007912 3.8e-37 159.5 286 38.8
Lj1A1009G47 Lonicera japonica HOM05D006306 ORTHO05D007912 3.8e-37 159.5 305 36.7
Phvul.007G076000 Phaseolus vulgaris HOM05D006306 ORTHO05D007912 4.9e-37 159.1 266 39.1
Glyma.10G229500 Glycine max HOM05D006306 ORTHO05D007912 6.4e-37 158.7 283 38.2
Lalb_Chr02g0141321 Lupinus albus HOM05D006306 ORTHO05D007912 6.4e-37 158.7 263 40.7
CDE08G0346 Ceratophyllum demersum HOM05D006306 ORTHO05D007912 1.4e-36 157.5 267 38.6
PGSC0003DMG400019962 Solanum tuberosum HOM05D006306 ORTHO05D007912 1.9e-36 157.1 284 38.7
MSTRG.27066 Avicennia marina HOM05D006306 ORTHO05D007912 5.4e-36 155.6 297 34.3
Manes.06G154300 Manihot esculenta HOM05D006306 ORTHO05D007912 7.1e-36 155.2 168 50.0
Medtr1g099490 Medicago truncatula HOM05D006306 ORTHO05D007912 7.1e-36 155.2 234 40.2
Haze_00077 Corylus avellana HOM05D000147 ORTHO05D002016 2.7e-35 153.3 266 40.6
HanXRQChr05g0141161 Helianthus annuus HOM05D006306 ORTHO05D007912 2.7e-35 153.3 296 36.8
Lsat_1_v5_gn_8_6341 Lactuca sativa HOM05D006306 ORTHO05D007912 6.0e-35 152.1 287 35.5
arahy.Tifrunner.gnm1.ann1.FS5X82 Arachis hypogaea HOM05D006306 ORTHO05D007912 2.3e-34 150.2 294 37.1
arahy.Tifrunner.gnm1.ann1.U1BTLB Arachis hypogaea HOM05D006306 ORTHO05D007912 3.0e-34 149.8 294 37.1
SGA_v2.0_scaffold192G40609 Striga asiatica HOM05D006306 ORTHO05D007912 8.7e-34 148.3 291 37.1
Lj5g0016065 Lotus japonicus HOM05D006306 ORTHO05D007912 4.3e-33 146.0 287 36.2
SalBow4G0206 Salvia bowleyana HOM05D006306 ORTHO05D007912 1.6e-32 144.1 267 37.1
Gohir.D12G255200 Gossypium hirsutum HOM05D006306 ORTHO05D007912 4.8e-32 142.5 176 47.2
AUR62031450 Chenopodium quinoa HOM05D006306 ORTHO05D007912 1.4e-31 141.0 233 38.6
Thecc.03G188100 Theobroma cacao HOM05D006306 ORTHO05D007912 1.4e-31 141.0 172 47.1
HPP92_009775 Vanilla planifolia HOM05D006306 ORTHO05D007912 2.4e-31 140.2 263 36.1
RcHm_v2.0_Chr1g0379281 Rosa chinensis HOM05D006306 ORTHO05D007912 4.0e-31 139.4 144 54.2
DCAR_020289 Daucus carota HOM05D006306 ORTHO05D007912 1.7e-29 134.0 146 51.4
unitig_92.g28262 Utricularia gibba HOM05D006306 ORTHO05D001071 1.1e-28 131.3 290 32.8
vmacro06599 Vaccinium macrocarpon HOM05D006306 ORTHO05D007912 2.4e-28 130.2 295 34.6
Zm00001eb293490 Zea mays HOM05D006306 ORTHO05D007912 3.2e-28 129.8 160 48.1
A10p10330 Brassica napus HOM05D006306 ORTHO05D007912 1.6e-27 127.5 106 66.0
MBI17_g41518_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 6.0e-27 125.6 237 38.4
Hma1.2p1_0142F.1_g064410 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 7.4e-25 118.6 198 38.4
C09p42540 Brassica napus HOM05D006306 ORTHO05D007912 1.8e-23 114.0 122 54.9
AagrBONN_evm.TU.Sc2ySwM_228.2460 Anthoceros agrestis HOM05D006306 ORTHO05D007912 7.6e-22 108.6 286 29.4
Pp3c4_17520 Physcomitrium patens HOM05D006306 ORTHO05D007912 1.0e-21 108.2 266 31.2
ECA233G3199 Erigeron canadensis HOM05D006306 ORTHO05D007912 1.7e-21 107.5 207 35.7
Nn1g01725 Nelumbo nucifera HOM05D006306 ORTHO05D007912 6.5e-21 105.5 266 32.7
Os05g0526300 Oryza sativa ssp. japonica HOM05D006306 ORTHO05D007912 4.2e-20 102.8 138 46.4
RcHm_v2.0_Chr1g0378761 Rosa chinensis HOM05D006306 ORTHO05D007912 2.1e-19 100.5 216 34.7
AagrBONN_evm.TU.Sc2ySwM_117.3502 Anthoceros agrestis HOM05D006306 ORTHO05D007912 6.0e-19 99.0 250 29.6
TPR.G7772 Trifolium pratense HOM05D006306 ORTHO05D007912 5.1e-18 95.9 189 37.0
Ah.13g069400 Amaranthus hybridus HOM05D006306 ORTHO05D007912 3.7e-16 89.7 108 47.2
RcHm_v2.0_Chr1g0379501 Rosa chinensis HOM05D006306 ORTHO05D007912 1.8e-15 87.4 185 35.7
CBR_g45678 Chara braunii HOM05D006306 ORTHO05D007912 9.0e-15 85.1 175 31.4
TPR.G10934 Trifolium pratense HOM05D006306 ORTHO05D007912 4.5e-14 82.8 89 51.7
Ah.13g069420 Amaranthus hybridus HOM05D006306 ORTHO05D007912 7.6e-14 82.0 127 40.9
Pp3c3_15840 Physcomitrium patens HOM05D006306 ORTHO05D007912 1.3e-13 81.3 298 26.8
MBI12_g17737_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 2.9e-13 80.1 112 43.8
MELO3C034012.2 Cucumis melo HOM05D006306 ORTHO05D007912 6.5e-13 79.0 202 30.2
Dinv28363 Davidia involucrata HOM05D000147 ORTHO05D002016 1.9e-12 77.4 74 55.4
CAN.G926.5 Capsicum annuum HOM05D006306 ORTHO05D007912 4.6e-11 72.8 189 29.1
ClCG04G002190 Citrullus lanatus HOM05D006306 ORTHO05D007912 5.1e-10 69.3 83 50.6
ClCG04G002620 Citrullus lanatus HOM05D006306 ORTHO05D007912 5.1e-10 69.3 83 50.6
SMO325G0002 Selaginella moellendorffii HOM05D006584 ORTHO05D007640 1.8e-07 60.8 246 23.2
COL.COLO4_02740 Corchorus olitorius HOM05D006306 ORTHO05D007912 6.9e-07 58.9 62 53.2
Prupe.2G304000 Prunus persica HOM05D006306 ORTHO05D007912 1.2e-06 58.2 62 51.6
CSS0035371 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 2.0e-06 57.4 109 28.4
Prupe.2G291600 Prunus persica HOM05D006306 ORTHO05D007912 3.4e-06 56.6 62 50.0


User provided reference genes

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