Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG3G8290 Aethionema arabicum HOM05D003765 ORTHO05D004561 0.0e+00 1156.4 623 100.0
Thhalv10012958m.g Eutrema salsugineum HOM05D003765 ORTHO05D004561 9.4e-169 597.8 647 59.4
Sp6g14100 Schrenkiella parvula HOM05D003765 ORTHO05D004561 7.5e-166 588.2 652 59.5
CARHR264740 Cardamine hirsuta HOM05D003765 ORTHO05D004561 2.3e-143 513.5 617 55.6
AL8G26150 Arabidopsis lyrata HOM05D003765 ORTHO05D004561 4.0e-143 512.7 628 55.6
AT5G51850 Arabidopsis thaliana HOM05D003765 ORTHO05D004561 5.2e-135 485.7 628 54.9
THA.LOC104798744 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 3.0e-122 443.4 682 46.2
THA.LOC104811493 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 1.2e-107 394.8 683 43.6
Carub.0008s1189 Capsella rubella HOM05D003765 ORTHO05D004561 5.8e-102 375.9 491 53.6
A10p09680 Brassica napus HOM05D003765 ORTHO05D004561 1.6e-99 367.9 429 56.6
BraA10t43049Z Brassica rapa HOM05D003765 ORTHO05D004561 7.9e-99 365.5 429 56.4
BolC9t57009H Brassica oleracea HOM05D003765 ORTHO05D004561 6.7e-98 362.5 606 45.0
BcaB08g35538 Brassica carinata HOM05D003765 ORTHO05D004561 3.8e-93 346.7 611 45.0
C09p41340 Brassica napus HOM05D003765 ORTHO05D004561 1.8e-90 337.8 389 57.3
Thhalv10025080m.g Eutrema salsugineum HOM05D003765 ORTHO05D004561 1.1e-68 265.4 505 41.6
Duzib084G1451 Durio zibethinus HOM05D003765 ORTHO05D004561 3.2e-60 237.3 728 31.9
Thecc.03G167000 Theobroma cacao HOM05D003765 ORTHO05D004561 3.2e-60 237.3 746 33.1
Sp7g23450 Schrenkiella parvula HOM05D003765 ORTHO05D004561 9.4e-60 235.7 411 43.1
BcaB03g12466 Brassica carinata HOM05D003765 ORTHO05D004561 3.0e-58 230.7 482 39.6
Cpa.g.sc4.199 Carica papaya HOM05D003765 ORTHO05D004561 8.8e-58 229.2 735 33.1
Manes.06G141500 Manihot esculenta HOM05D003765 ORTHO05D004561 1.7e-56 224.9 740 32.8
BcaC07g38188 Brassica carinata HOM05D003765 ORTHO05D004561 9.1e-55 219.2 454 39.0
Potri.015G135200 Populus trichocarpa HOM05D003765 ORTHO05D004561 3.8e-53 213.8 746 31.9
Sabra15G0147100 Salix brachista HOM05D003765 ORTHO05D004561 1.1e-52 212.2 765 31.1
BolC8t48608H Brassica oleracea HOM05D003765 ORTHO05D004561 2.5e-52 211.1 454 39.2
Ciclev10004387m.g Citrus clementina HOM05D003765 ORTHO05D004561 1.6e-51 208.4 753 31.1
Duzib205G1056 Durio zibethinus HOM05D003765 ORTHO05D004561 1.5e-49 201.8 614 34.4
Potri.012G132900 Populus trichocarpa HOM05D003765 ORTHO05D004561 1.5e-49 201.8 770 31.0
Gorai.008G281700 Gossypium raimondii HOM05D003765 ORTHO05D004561 3.7e-48 197.2 605 33.6
THA.LOC104824843 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 7.0e-47 193.0 732 30.2
BraA08t34069Z Brassica rapa HOM05D003765 ORTHO05D004561 5.9e-46 189.9 460 37.2
Actinidia13542 Actinidia chinensis HOM05D003765 ORTHO05D004561 1.3e-45 188.7 701 29.8
A08p21190 Brassica napus HOM05D003765 ORTHO05D004561 1.3e-45 188.7 460 37.0
Atru.chr1.559 Acer truncatum HOM05D003765 ORTHO05D004561 5.0e-45 186.8 774 29.1
Gohir.D12G262800 Gossypium hirsutum HOM05D003765 ORTHO05D004561 1.9e-44 184.9 585 33.3
Gohir.A12G262100 Gossypium hirsutum HOM05D003765 ORTHO05D004561 2.1e-43 181.4 602 31.6
Lj1A988T34 Lonicera japonica HOM05D003765 ORTHO05D004561 6.1e-43 179.9 725 29.2
Gorai.006G196800 Gossypium raimondii HOM05D003765 ORTHO05D004561 1.0e-42 179.1 692 29.9
Sabra12G0100000 Salix brachista HOM05D003765 ORTHO05D004561 1.0e-42 179.1 758 30.1
Gohir.D09G174700 Gossypium hirsutum HOM05D003765 ORTHO05D004561 1.4e-42 178.7 689 29.9
Oeu030141.1 Olea europaea HOM05D003765 ORTHO05D004561 1.8e-42 178.3 652 31.9
Manes.14G030900 Manihot esculenta HOM05D003765 ORTHO05D004561 5.2e-42 176.8 743 30.0
GSVIVG01018447001 Vitis vinifera HOM05D003765 ORTHO05D004561 5.7e-41 173.3 657 31.8
AT4G25430 Arabidopsis thaliana HOM05D003765 ORTHO05D023707 2.2e-40 171.4 486 34.2
Nitab4.5_0004911g0030 Nicotiana tabacum HOM05D003765 ORTHO05D004561 3.7e-40 170.6 662 30.8
Peaxi162Scf00192g00516 Petunia axillaris HOM05D003765 ORTHO05D004561 6.4e-40 169.9 668 31.6
Gohir.A09G179400 Gossypium hirsutum HOM05D003765 ORTHO05D004561 1.4e-39 168.7 689 29.8
Nitab4.5_0000599g0030 Nicotiana tabacum HOM05D003765 ORTHO05D004561 2.4e-39 167.9 637 30.9
Sp2g25350 Schrenkiella parvula HOM05D003765 ORTHO05D004561 3.5e-38 164.1 694 29.4
FAN06G1616 Fragaria x ananassa HOM05D003765 ORTHO05D004561 1.0e-37 162.5 700 30.1
FAN06G4109 Fragaria x ananassa HOM05D003765 ORTHO05D004561 1.0e-37 162.5 700 30.1
FAN10G2022 Fragaria x ananassa HOM05D003765 ORTHO05D004561 1.7e-37 161.8 720 30.3
AL8G38980 Arabidopsis lyrata HOM05D003765 ORTHO05D004561 3.0e-37 161.0 700 30.6
FvH4_7g28730 Fragaria vesca HOM05D003765 ORTHO05D004561 3.0e-37 161.0 700 29.9
FAN03G1770 Fragaria x ananassa HOM05D003765 ORTHO05D004561 6.6e-37 159.8 703 29.4
Peaxi162Scf00557g00216 Petunia axillaris HOM05D003765 ORTHO05D004561 1.1e-36 159.1 730 28.2
CiPaw.03G100300 Carya illinoinensis HOM05D003765 ORTHO05D004561 1.5e-36 158.7 745 31.1
Oeu030257.1 Olea europaea HOM05D003765 ORTHO05D004561 1.9e-36 158.3 676 29.1
Phvul.007G065400 Phaseolus vulgaris HOM05D003765 ORTHO05D004561 1.9e-36 158.3 713 29.2
Prupe.2G287400 Prunus persica HOM05D003765 ORTHO05D004561 1.9e-36 158.3 723 28.8
Psat1g111440 Pisum sativum HOM05D003765 ORTHO05D004561 5.6e-36 156.8 688 29.7
RcHm_v2.0_Chr1g0376241 Rosa chinensis HOM05D003765 ORTHO05D004561 5.6e-36 156.8 674 30.1
THA.LOC104818268 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 5.6e-36 156.8 730 28.2
FAN03G1055 Fragaria x ananassa HOM05D003765 ORTHO05D004561 7.3e-36 156.4 718 30.6
Glyma.10G240600 Glycine max HOM05D003765 ORTHO05D004561 2.8e-35 154.5 709 29.9
BraA06t25836Z Brassica rapa HOM05D003765 ORTHO05D004561 3.6e-35 154.1 702 29.5
Carub.0008s2285 Capsella rubella HOM05D003765 ORTHO05D004561 3.6e-35 154.1 699 28.0
MSTRG.8430 Avicennia marina HOM05D003765 ORTHO05D004561 8.0e-35 152.9 701 29.1
Haze_13790 Corylus avellana HOM05D003765 ORTHO05D004561 8.0e-35 152.9 636 29.9
Phvul.004G123200 Phaseolus vulgaris HOM05D003765 ORTHO05D004561 8.0e-35 152.9 708 29.5
A06p28880 Brassica napus HOM05D003765 ORTHO05D004561 1.1e-34 152.5 699 29.9
Cc02_g03580 Coffea canephora HOM05D003765 ORTHO05D004561 1.8e-34 151.8 744 28.2
Glyma.20G154100 Glycine max HOM05D003765 ORTHO05D004561 1.8e-34 151.8 726 28.7
FAN01G1737 Fragaria x ananassa HOM05D003765 ORTHO05D004561 2.3e-34 151.4 721 29.5
MD00G1004300 Malus domestica HOM05D003765 ORTHO05D004561 2.3e-34 151.4 763 29.9
Thhalv10003732m.g Eutrema salsugineum HOM05D003765 ORTHO05D004561 3.1e-34 151.0 696 29.6
Lalb_Chr21g0304901 Lupinus albus HOM05D003765 ORTHO05D004561 3.1e-34 151.0 690 29.6
BolC3t18736H Brassica oleracea HOM05D003765 ORTHO05D004561 5.2e-34 150.2 699 29.3
Lalb_Chr03g0034171 Lupinus albus HOM05D003765 ORTHO05D004561 5.2e-34 150.2 664 28.6
Glyma.16G200400 Glycine max HOM05D003765 ORTHO05D004561 6.8e-34 149.8 748 30.2
Nitab4.5_0000205g0170 Nicotiana tabacum HOM05D003765 ORTHO05D004561 6.8e-34 149.8 687 30.3
Medtr6g089530 Medicago truncatula HOM05D003765 ORTHO05D004561 1.2e-33 149.1 749 27.9
Rhsim03G0174800 Rhododendron simsii HOM05D003765 ORTHO05D004561 1.2e-33 149.1 606 30.5
Lj5g0012460 Lotus japonicus HOM05D003765 ORTHO05D004561 1.5e-33 148.7 684 28.8
DCAR_014604 Daucus carota HOM05D003765 ORTHO05D004561 2.0e-33 148.3 728 28.6
Solyc03g006840.4 Solanum lycopersicum HOM05D003765 ORTHO05D004561 2.6e-33 147.9 656 28.5
Medtr1g101910 Medicago truncatula HOM05D003765 ORTHO05D004561 3.4e-33 147.5 693 28.6
Sopen03g002830 Solanum pennellii HOM05D003765 ORTHO05D004561 3.4e-33 147.5 654 29.5
Aa31LG11G1410 Aethionema arabicum HOM05D003765 ORTHO05D004561 5.8e-33 146.7 572 31.1
TAR629G2057 Trochodendron aralioides HOM05D003765 ORTHO05D004561 1.7e-32 145.2 669 29.4
MSTRG.114 Avicennia marina HOM05D003765 ORTHO05D004561 2.9e-32 144.4 740 28.2
AL7G27690 Arabidopsis lyrata HOM05D003765 ORTHO05D004561 3.7e-32 144.1 448 32.4
Glyma.09G148700 Glycine max HOM05D003765 ORTHO05D004561 4.9e-32 143.7 748 30.1
Nn1g01288 Nelumbo nucifera HOM05D003765 ORTHO05D004561 8.3e-32 142.9 775 27.7
Lj2g0000316 Lotus japonicus HOM05D003765 ORTHO05D004561 1.1e-31 142.5 720 28.5
PGSC0003DMG400024251 Solanum tuberosum HOM05D003765 ORTHO05D004561 3.2e-31 141.0 654 28.4
CARHR275960 Cardamine hirsuta HOM05D003765 ORTHO05D004561 4.1e-31 140.6 693 29.1
Dinv35140 Davidia involucrata HOM05D003765 ORTHO05D004561 5.4e-31 140.2 486 33.5
TPR.G21305 Trifolium pratense HOM05D003765 ORTHO05D004561 5.4e-31 140.2 685 26.1
Eucgr.A02847 Eucalyptus grandis HOM05D003765 ORTHO05D004561 9.2e-31 139.4 702 28.3
MD01G1193200 Malus domestica HOM05D003765 ORTHO05D004561 2.0e-30 138.3 762 27.7
AT5G62170 Arabidopsis thaliana HOM05D003765 ORTHO05D004561 6.0e-30 136.7 590 29.8
C03p64740 Brassica napus HOM05D003765 ORTHO05D004561 7.8e-30 136.3 578 29.2
Dinv28506 Davidia involucrata HOM05D003765 ORTHO05D004561 1.7e-29 135.2 473 32.3
CDE04G3755 Ceratophyllum demersum HOM05D003765 ORTHO05D004561 2.3e-29 134.8 709 28.6
COL.COLO4_14229 Corchorus olitorius HOM05D003765 ORTHO05D004561 3.0e-29 134.4 524 31.5
MBI04_g06623_MAGBIO Magnolia biondii HOM05D003765 ORTHO05D004561 3.9e-29 134.0 560 29.8
Aqoxy7G00497 Aquilegia oxysepala HOM05D003765 ORTHO05D004561 7.3e-28 129.8 716 27.1
PGR042G0955 Punica granatum HOM05D003765 ORTHO05D004561 1.2e-27 129.0 731 27.2
CANSAT21G2021 Cannabis sativa HOM05D003765 ORTHO05D004561 2.8e-27 127.9 796 26.8
SalBow2G1841 Salvia bowleyana HOM05D003765 ORTHO05D004561 6.2e-27 126.7 633 26.7
VMungo0720G0810 Vigna mungo HOM05D003765 ORTHO05D004561 8.1e-27 126.3 711 26.9
Psat6g201640 Pisum sativum HOM05D003765 ORTHO05D004561 3.1e-26 124.4 607 27.7
Sc19g0001750 Simmondsia chinensis HOM05D003765 ORTHO05D004561 6.8e-26 123.2 637 31.4
TPR.G17415 Trifolium pratense HOM05D003765 ORTHO05D004561 6.8e-26 123.2 675 26.8
Ca_10812_v3 Cicer arietinum L. HOM05D003765 ORTHO05D004561 2.0e-25 121.7 701 27.0
Lalb_Chr02g0140881 Lupinus albus HOM05D003765 ORTHO05D004561 9.9e-25 119.4 683 27.2
DCAR_009410 Daucus carota HOM05D003765 ORTHO05D004561 4.9e-24 117.1 632 28.8
Lsat_1_v5_gn_9_53700 Lactuca sativa HOM05D003765 ORTHO05D004561 2.4e-23 114.8 729 25.8
vmacro06738 Vaccinium macrocarpon HOM05D003765 ORTHO05D004561 2.4e-23 114.8 691 27.4
ECA238G0747 Erigeron canadensis HOM05D003765 ORTHO05D004561 3.2e-23 114.4 711 24.8
Ah.07g208800 Amaranthus hybridus HOM05D003765 ORTHO05D004561 5.4e-23 113.6 681 28.2
Lsat_1_v5_gn_2_130181 Lactuca sativa HOM05D003765 ORTHO05D004561 7.1e-23 113.2 670 26.0
Carub.0007s1558 Capsella rubella HOM05D003765 ORTHO05D004561 4.6e-22 110.5 349 35.2
PSO478G3102 Papaver somniferum HOM05D003765 ORTHO05D004561 6.0e-22 110.2 727 25.9
Nn6g34319 Nelumbo nucifera HOM05D003765 ORTHO05D004561 1.0e-21 109.4 777 26.9
arahy.Tifrunner.gnm1.ann1.G7HECD Arachis hypogaea HOM05D003765 ORTHO05D004561 2.3e-21 108.2 634 26.8
PSO782G0143 Papaver somniferum HOM05D003765 ORTHO05D004561 1.5e-20 105.5 726 26.6
SalBow4G0450 Salvia bowleyana HOM05D003765 ORTHO05D004561 1.5e-20 105.5 643 26.0
arahy.Tifrunner.gnm1.ann1.S2H83J Arachis hypogaea HOM05D003765 ORTHO05D004561 2.5e-20 104.8 696 26.7
EL10Ac3g05741 Beta vulgaris HOM05D003765 ORTHO05D004561 4.3e-20 104.0 703 25.6
Migut.F01159 Erythranthe guttata HOM05D003765 ORTHO05D004561 7.3e-20 103.2 627 26.2
Hma1.2p1_0488F.1_g163950 Hydrangea macrophylla HOM05D003765 ORTHO05D004561 7.3e-20 103.2 608 29.1
CDE07G1851 Ceratophyllum demersum HOM05D003765 ORTHO05D004561 8.9e-18 96.3 701 25.1
HanXRQChr15g0486221 Helianthus annuus HOM05D003765 ORTHO05D004561 2.0e-17 95.1 285 32.3
VMungo0464G1637 Vigna mungo HOM05D003765 ORTHO05D004561 3.4e-17 94.4 286 34.6
unitig_37.g11944 Utricularia gibba HOM05D003765 ORTHO05D004561 4.4e-17 94.0 243 34.2
HanXRQChr14g0461811 Helianthus annuus HOM05D003765 ORTHO05D004561 1.7e-16 92.0 677 25.0
ECA232G3914 Erigeron canadensis HOM05D003765 ORTHO05D004561 4.9e-16 90.5 689 25.3
Dinv40025 Davidia involucrata HOM05D003765 ORTHO05D000169 3.2e-15 87.8 197 40.1
ClCG05G007700 Citrullus lanatus HOM05D003765 ORTHO05D004561 5.4e-15 87.0 626 26.4
Aa31LG6G8690 Aethionema arabicum HOM05D003765 ORTHO05D004561 1.0e-13 82.8 161 42.2
AUR62016059 Chenopodium quinoa HOM05D003765 ORTHO05D004561 3.0e-13 81.3 570 25.4
CsaV3_3G016640 Cucumis sativus L. HOM05D003765 ORTHO05D004561 3.9e-13 80.9 619 25.5
BraA09t36408Z Brassica rapa HOM05D003765 ORTHO05D004561 1.5e-12 79.0 292 31.8
BcaB02g09632 Brassica carinata HOM05D003765 ORTHO05D004561 3.3e-12 77.8 603 24.2
BolC9t53753H Brassica oleracea HOM05D003765 ORTHO05D004561 5.6e-12 77.0 289 31.5
MELO3C006859.2 Cucumis melo HOM05D003765 ORTHO05D004561 7.3e-12 76.6 625 26.7
ClCG01G005340 Citrullus lanatus HOM05D003765 ORTHO05D004561 2.1e-11 75.1 233 29.2
A09p07540 Brassica napus HOM05D003765 ORTHO05D004561 3.6e-11 74.3 312 29.8
C09p08430 Brassica napus HOM05D003765 ORTHO05D004561 3.6e-11 74.3 309 30.4
BcaC04g23427 Brassica carinata HOM05D003765 ORTHO05D004561 1.4e-10 72.4 163 38.7
Sed0025435 Sechium edule HOM05D003765 ORTHO05D004561 3.4e-09 67.8 322 28.6
AUR62021267 Chenopodium quinoa HOM05D003765 ORTHO05D004561 3.8e-08 64.3 432 27.5
CsaV3_5G005590 Cucumis sativus L. HOM05D003765 ORTHO05D004561 6.4e-08 63.5 287 27.5
BcaNung01408 Brassica carinata HOM05D003765 ORTHO05D004561 8.4e-08 63.2 289 29.8
BcaNung01409 Brassica carinata HOM05D003765 ORTHO05D004561 8.4e-08 63.2 289 29.8
Dinv28507 Davidia involucrata HOM05D003765 ORTHO05D004561 7.1e-07 60.1 151 35.1
VMungo0251G2630 Vigna mungo HOM05D003765 ORTHO05D004561 1.2e-06 59.3 108 44.4
SGA_v2.0_scaffold113G31787 Striga asiatica HOM05D003765 ORTHO05D004561 6.0e-06 57.0 612 23.0
VMungo0100G0003 Vigna mungo HOM05D003765 ORTHO05D004561 6.0e-06 57.0 108 43.5


User provided reference genes

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