Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG3G7760 Aethionema arabicum HOM05D005379 ORTHO05D006661 2.4e-173 612.1 310 100.0
AT5G51220 Arabidopsis thaliana HOM05D005379 ORTHO05D006661 5.8e-127 458.0 309 76.1
CARHR256800 Cardamine hirsuta HOM05D005379 ORTHO05D006661 5.8e-127 458.0 309 76.1
Sp6g13420 Schrenkiella parvula HOM05D005379 ORTHO05D006661 1.6e-124 449.9 306 76.1
Carub.0008s1126 Capsella rubella HOM05D005379 ORTHO05D006661 1.0e-123 447.2 309 75.1
Thhalv10014342m.g Eutrema salsugineum HOM05D005379 ORTHO05D006661 3.0e-123 445.7 306 74.5
BcaB08g35480 Brassica carinata HOM05D005379 ORTHO05D006661 4.3e-122 441.8 306 73.5
BcaC04g20721 Brassica carinata HOM05D005379 ORTHO05D006661 9.9e-119 430.6 306 73.2
THA.LOC104811535 Tarenaya hassleriana HOM05D005379 ORTHO05D006661 2.4e-112 409.5 306 69.3
AL8G25500 Arabidopsis lyrata HOM05D005379 ORTHO05D006661 2.5e-106 389.4 248 79.8
A10p07900 Brassica napus HOM05D005379 ORTHO05D006661 4.3e-106 388.7 245 79.6
BraSC35t46008Z Brassica rapa HOM05D005379 ORTHO05D006661 4.3e-106 388.7 245 79.6
C09p39890 Brassica napus HOM05D005379 ORTHO05D006661 2.8e-105 386.0 245 79.2
BolC9t56888H Brassica oleracea HOM05D005379 ORTHO05D006661 2.8e-105 386.0 245 79.2
Thecc.03G149400 Theobroma cacao HOM05D005379 ORTHO05D006661 2.7e-100 369.4 307 62.2
Potri.003G151600 Populus trichocarpa HOM05D005379 ORTHO05D006661 1.5e-98 363.6 278 66.9
Gohir.A07G043200 Gossypium hirsutum HOM05D005379 ORTHO05D006661 1.9e-98 363.2 307 61.9
Ciclev10005581m.g Citrus clementina HOM05D005379 ORTHO05D006661 2.2e-97 359.8 284 64.8
Gorai.001G050800 Gossypium raimondii HOM05D005379 ORTHO05D006661 2.2e-97 359.8 308 62.3
Manes.14G038300 Manihot esculenta HOM05D005379 ORTHO05D006661 9.1e-96 354.4 278 65.5
TWI23G1062 Tripterygium wilfordii HOM05D005379 ORTHO05D006661 9.1e-96 354.4 311 61.1
Prupe.2G273100 Prunus persica HOM05D005379 ORTHO05D006661 1.0e-94 350.9 285 63.5
Glyma.15G056200 Glycine max HOM05D005379 ORTHO05D006661 6.5e-94 348.2 297 60.6
Lalb_Chr05g0217631 Lupinus albus HOM05D005379 ORTHO05D006661 1.6e-92 343.6 306 58.8
Psat1g214640 Pisum sativum HOM05D005379 ORTHO05D006661 1.6e-92 343.6 272 63.2
QL09p028045 Quercus lobata HOM05D005379 ORTHO05D006661 2.1e-92 343.2 271 64.2
Rhsim03G0161700 Rhododendron simsii HOM05D005379 ORTHO05D006661 2.7e-92 342.8 285 62.1
Cfa013572 Carpinus fangiana HOM05D005379 ORTHO05D006661 1.0e-91 340.9 305 59.0
Glyma.08G176800 Glycine max HOM05D005379 ORTHO05D006661 1.4e-91 340.5 289 59.9
Lj3g0027387 Lotus japonicus HOM05D005379 ORTHO05D006661 3.0e-91 339.3 293 58.4
Phvul.006G202400 Phaseolus vulgaris HOM05D005379 ORTHO05D006661 3.9e-91 339.0 289 59.9
GSVIVG01013977001 Vitis vinifera HOM05D005379 ORTHO05D006661 5.1e-91 338.6 298 59.1
MD01G1177600 Malus domestica HOM05D005379 ORTHO05D006661 8.8e-91 337.8 284 62.7
VMungo0540G0153 Vigna mungo HOM05D005379 ORTHO05D006661 8.8e-91 337.8 289 59.5
MD07G1249400 Malus domestica HOM05D005379 ORTHO05D006661 1.5e-90 337.0 285 62.1
EL10Ac3g05878 Beta vulgaris HOM05D005379 ORTHO05D006661 2.6e-90 336.3 293 60.1
AUR62015453 Chenopodium quinoa HOM05D005379 ORTHO05D006661 2.6e-90 336.3 287 60.3
PGR004G0100 Punica granatum HOM05D005379 ORTHO05D006661 2.6e-90 336.3 310 56.1
Medtr2g009320 Medicago truncatula HOM05D005379 ORTHO05D006661 5.7e-90 335.1 251 64.9
AUR62002241 Chenopodium quinoa HOM05D005379 ORTHO05D006661 7.4e-90 334.7 287 59.6
Hund04565 Selenicereus undatus HOM05D005379 ORTHO05D006661 9.7e-90 334.3 294 60.2
FvH4_7g27000 Fragaria vesca HOM05D005379 ORTHO05D006661 1.3e-89 334.0 307 57.0
Dinv06588 Davidia involucrata HOM05D005379 ORTHO05D006661 1.7e-89 333.6 288 60.4
TAR375G0328 Trochodendron aralioides HOM05D005379 ORTHO05D006661 2.8e-89 332.8 303 60.7
Solyc06g034100.4 Solanum lycopersicum HOM05D005379 ORTHO05D006661 3.7e-89 332.4 273 61.9
CANSAT56G1299 Cannabis sativa HOM05D005379 ORTHO05D006661 4.8e-89 332.0 289 60.2
CANSAT56G0595 Cannabis sativa HOM05D005379 ORTHO05D006661 6.3e-89 331.6 289 60.2
Ca_00152_v3 Cicer arietinum L. HOM05D005379 ORTHO05D006661 6.3e-89 331.6 272 60.3
MELO3C008037.2 Cucumis melo HOM05D005379 ORTHO05D006661 8.2e-89 331.3 276 63.0
Sopen06g010750 Solanum pennellii HOM05D005379 ORTHO05D006661 8.2e-89 331.3 273 61.5
Sc18g0007310 Simmondsia chinensis HOM05D005379 ORTHO05D006661 1.1e-88 330.9 290 58.6
Migut.F00521 Erythranthe guttata HOM05D005379 ORTHO05D006661 1.4e-88 330.5 309 57.6
Eucgr.K00130 Eucalyptus grandis HOM05D005379 ORTHO05D006661 3.1e-88 329.3 285 60.7
Sed0000219 Sechium edule HOM05D005379 ORTHO05D006661 3.1e-88 329.3 293 59.7
Hund11852 Selenicereus undatus HOM05D005379 ORTHO05D006661 4.1e-88 328.9 287 62.0
CsaV3_6G041840 Cucumis sativus L. HOM05D005379 ORTHO05D006661 5.3e-88 328.6 310 57.4
Sabra03G0109800 Salix brachista HOM05D005379 ORTHO05D006661 6.9e-88 328.2 220 74.5
CSS0027857 Camellia sinensis var. sinensis HOM05D005379 ORTHO05D006661 1.5e-87 327.0 274 59.9
Cc02_g04670 Coffea canephora HOM05D005379 ORTHO05D006661 5.9e-87 325.1 284 60.9
PSO782G5074 Papaver somniferum HOM05D005379 ORTHO05D006661 5.9e-87 325.1 316 57.3
ClCG01G015600 Citrullus lanatus HOM05D005379 ORTHO05D006661 7.7e-87 324.7 274 61.3
CiPaw.08G041400 Carya illinoinensis HOM05D005379 ORTHO05D006661 1.0e-86 324.3 245 66.1
CDE11G0172 Ceratophyllum demersum HOM05D005379 ORTHO05D006661 1.3e-86 323.9 277 61.4
MBI04_g36330_MAGBIO Magnolia biondii HOM05D005379 ORTHO05D006661 1.3e-86 323.9 311 56.9
MBI04_g38758_MAGBIO Magnolia biondii HOM05D005379 ORTHO05D006661 1.7e-86 323.6 311 57.2
Actinidia31774 Actinidia chinensis HOM05D005379 ORTHO05D006661 2.9e-86 322.8 266 62.4
Nitab4.5_0002211g0080 Nicotiana tabacum HOM05D005379 ORTHO05D006661 6.5e-86 321.6 278 59.0
arahy.Tifrunner.gnm1.ann1.3L844V Arachis hypogaea HOM05D005379 ORTHO05D006661 8.5e-86 321.2 289 58.8
MSTRG.8845 Avicennia marina HOM05D005379 ORTHO05D006661 3.2e-85 319.3 282 61.3
Ah.13g071160 Amaranthus hybridus HOM05D005379 ORTHO05D006661 5.5e-85 318.5 292 56.8
Lsat_1_v5_gn_8_9541 Lactuca sativa HOM05D005379 ORTHO05D006661 9.4e-85 317.8 276 58.7
SalBow5G2200 Salvia bowleyana HOM05D005379 ORTHO05D006661 9.4e-85 317.8 322 55.9
RcHm_v2.0_Chr1g0373791 Rosa chinensis HOM05D005379 ORTHO05D006661 1.2e-84 317.4 247 64.0
FAN06G0815 Fragaria x ananassa HOM05D005379 ORTHO05D006661 2.1e-84 316.6 302 55.6
SalBow7G1847 Salvia bowleyana HOM05D005379 ORTHO05D006661 2.1e-84 316.6 331 55.0
Nitab4.5_0010756g0010 Nicotiana tabacum HOM05D005379 ORTHO05D006661 2.7e-84 316.2 311 55.3
PSO063G0621 Papaver somniferum HOM05D005379 ORTHO05D006661 2.7e-84 316.2 308 56.8
ECA233G0107 Erigeron canadensis HOM05D003586 ORTHO05D004036 3.6e-84 315.8 270 57.4
Nitab4.5_0000262g0030 Nicotiana tabacum HOM05D005379 ORTHO05D006661 3.6e-84 315.8 219 72.1
arahy.Tifrunner.gnm1.ann1.8RST7H Arachis hypogaea HOM05D005379 ORTHO05D006661 3.9e-83 312.4 292 57.5
Nitab4.5_0000448g0020 Nicotiana tabacum HOM05D005379 ORTHO05D006661 5.2e-83 312.0 219 71.2
FAN10G0849 Fragaria x ananassa HOM05D005379 ORTHO05D006661 2.6e-82 309.7 246 62.6
ECA238G1883 Erigeron canadensis HOM05D005379 ORTHO05D006661 3.3e-82 309.3 257 60.3
Lj1A584T32 Lonicera japonica HOM05D005379 ORTHO05D006661 5.7e-82 308.5 199 73.9
vmacro06833 Vaccinium macrocarpon HOM05D005379 ORTHO05D006661 5.7e-82 308.5 230 64.3
HanXRQChr05g0139501 Helianthus annuus HOM05D005379 ORTHO05D006661 1.3e-81 307.4 251 60.2
COL.COLO4_37344 Corchorus olitorius HOM05D003586 ORTHO05D004036 2.2e-81 306.6 218 69.3
FAN03G3283 Fragaria x ananassa HOM05D005379 ORTHO05D006661 3.7e-81 305.8 246 61.4
HanXRQChr08g0222701 Helianthus annuus HOM05D005379 ORTHO05D006661 4.8e-81 305.4 250 59.6
HanXRQChr07g0205531 Helianthus annuus HOM05D005379 ORTHO05D006661 6.3e-81 305.1 260 60.4
CAN.G174.21 Capsicum annuum HOM05D005379 ORTHO05D006661 1.8e-80 303.5 213 69.0
TAR374G0427 Trochodendron aralioides HOM05D005379 ORTHO05D006661 1.8e-80 303.5 254 61.8
Zm00001eb321690 Zea mays HOM05D005379 ORTHO05D006661 1.8e-80 303.5 268 59.3
Oeu042535.3 Olea europaea HOM05D005379 ORTHO05D006661 4.1e-80 302.4 247 60.7
Os07g0490300 Oryza sativa ssp. japonica HOM05D005379 ORTHO05D006661 4.1e-80 302.4 254 60.6
Haze_22191 Corylus avellana HOM05D005379 ORTHO05D006661 1.6e-79 300.4 338 51.8
HPP92_009947 Vanilla planifolia HOM05D005379 ORTHO05D006227 8.5e-78 294.7 231 64.5
SalBow7G3941 Salvia bowleyana HOM05D005379 ORTHO05D006661 1.9e-77 293.5 317 53.9
ATR0057G081 Amborella trichopoda HOM05D005379 ORTHO05D006661 2.5e-77 293.1 239 62.3
Cpa.g.sc13.263 Carica papaya HOM05D005379 ORTHO05D006661 9.4e-77 291.2 224 67.0
DCAR_018078 Daucus carota HOM05D005379 ORTHO05D006661 2.7e-76 289.7 298 51.7
Gohir.D07G047600 Gossypium hirsutum HOM05D005379 ORTHO05D006661 3.7e-73 279.3 214 66.4
Hma1.2p1_0456F.1_g156820 Hydrangea macrophylla HOM05D005379 ORTHO05D006661 1.1e-72 277.7 311 50.2
SGA_v2.0_scaffold60G20811 Striga asiatica HOM05D005379 ORTHO05D006661 9.1e-72 274.6 252 58.3
Peaxi162Scf00304g01113 Petunia axillaris HOM05D005379 ORTHO05D006661 2.0e-71 273.5 196 68.9
Peaxi162Scf00167g00730 Petunia axillaris HOM05D005379 ORTHO05D006661 5.0e-70 268.9 170 75.9
Manes.06G131601 Manihot esculenta HOM05D005379 ORTHO05D006661 4.2e-69 265.8 256 59.4
Zm00001eb105230 Zea mays HOM05D005379 ORTHO05D006661 5.5e-69 265.4 186 70.4
BcaB05g24017 Brassica carinata HOM05D005379 ORTHO05D006661 4.4e-66 255.8 256 61.3
Actinidia31671 Actinidia chinensis HOM05D005379 ORTHO05D006661 7.0e-64 248.4 212 59.4
Oeu022464.1 Olea europaea HOM05D005379 ORTHO05D006661 1.2e-60 237.7 195 61.5
TPR.G9516 Trifolium pratense HOM05D005379 ORTHO05D006661 5.2e-59 232.3 187 61.5
AagrBONN_evm.TU.Sc2ySwM_228.472 Anthoceros agrestis HOM05D005379 ORTHO05D006661 3.6e-52 209.5 268 42.9
FAN06G1013 Fragaria x ananassa HOM05D005379 ORTHO05D006661 3.4e-50 203.0 174 59.8
Mapoly0029s0089 Marchantia polymorpha HOM05D005379 ORTHO05D006661 7.5e-50 201.8 302 39.4
Pp3c8_7310 Physcomitrium patens HOM05D005379 ORTHO05D006661 6.4e-49 198.7 237 43.5
CANSAT56G1106 Cannabis sativa HOM05D005379 ORTHO05D006661 3.5e-47 193.0 162 60.5
CBR_g48514 Chara braunii HOM05D005379 ORTHO05D006661 1.5e-45 187.6 241 40.7
SMO361G0220 Selaginella moellendorffii HOM05D005379 ORTHO05D006661 3.3e-45 186.4 225 43.6
unitig_0.g2509 Utricularia gibba HOM05D005379 ORTHO05D006661 4.4e-42 176.0 135 65.9
Lalb_Chr16g0382791 Lupinus albus HOM05D005379 ORTHO05D006661 5.4e-40 169.1 143 61.5
CANSAT56G1775 Cannabis sativa HOM05D005379 ORTHO05D006661 2.3e-38 163.7 102 73.5
A02p12440 Brassica napus HOM05D005379 ORTHO05D006661 7.8e-31 138.7 80 82.5
BraA02t06308Z Brassica rapa HOM05D005379 ORTHO05D006661 3.9e-30 136.3 80 82.5
BcaC03g14620 Brassica carinata HOM05D005379 ORTHO05D006661 5.1e-30 136.0 87 73.6
MCO01G548 Micromonas commoda HOM05D005379 ORTHO05D006661 4.0e-27 126.3 218 33.5
Dinv06594 Davidia involucrata HOM05D005379 ORTHO05D006661 1.3e-25 121.3 125 55.2
BolC2t08192H Brassica oleracea HOM05D005379 ORTHO05D006661 1.9e-21 107.5 71 73.2
Cre01.g052050 Chlamydomonas reinhardtii HOM05D005379 ORTHO05D006661 5.2e-19 99.4 266 29.3
Ah.13g066300 Amaranthus hybridus HOM05D005379 ORTHO05D006661 1.4e-16 91.3 97 50.5
Ah.13g066320 Amaranthus hybridus HOM05D005379 ORTHO05D006661 1.4e-16 91.3 158 39.2
Lalb_Chr16g0382801 Lupinus albus HOM05D005379 ORTHO05D006661 1.9e-13 80.9 73 54.8
HPP92_009967 Vanilla planifolia HOM05D005379 ORTHO05D006661 1.3e-12 78.2 111 40.5
HPP92_009968 Vanilla planifolia HOM05D005379 ORTHO05D006661 9.9e-10 68.6 40 77.5
Thhalv10029279m.g Eutrema salsugineum HOM05D005379 ORTHO05D006661 1.7e-09 67.8 83 48.2
C02p20560 Brassica napus HOM05D005379 ORTHO05D006661 5.4e-08 62.8 52 55.8
SEGI_00850 Sequoiadendron giganteum HOM05D005379 ORTHO05D006661 5.4e-08 62.8 47 61.7
RcHm_v2.0_Chr1g0373801 Rosa chinensis HOM05D005379 ORTHO05D006661 6.7e-06 55.8 33 75.8


User provided reference genes

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