Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG3G6360 Aethionema arabicum HOM05D006205 ORTHO05D007703 2.0e-233 812.0 389 100.0
AL3G23830 Arabidopsis lyrata HOM05D006205 ORTHO05D007703 1.2e-193 679.9 390 84.6
Carub.0003s1152 Capsella rubella HOM05D006205 ORTHO05D007703 1.0e-192 676.8 390 84.9
AT3G12150 Arabidopsis thaliana HOM05D006205 ORTHO05D007703 1.3e-192 676.4 390 84.1
Thhalv10021002m.g Eutrema salsugineum HOM05D006205 ORTHO05D007703 2.2e-192 675.6 391 84.4
Sp3g10390 Schrenkiella parvula HOM05D006205 ORTHO05D007703 3.8e-192 674.9 390 84.4
A05p37150 Brassica napus HOM05D006205 ORTHO05D007703 2.7e-190 668.7 390 83.1
C05p55580 Brassica napus HOM05D006205 ORTHO05D007703 2.7e-190 668.7 390 83.1
BolC5t34227H Brassica oleracea HOM05D006205 ORTHO05D007703 2.7e-190 668.7 390 83.1
BraA05t22513Z Brassica rapa HOM05D006205 ORTHO05D007703 5.1e-189 664.5 390 82.3
BcaC05g29277 Brassica carinata HOM05D006205 ORTHO05D007703 8.8e-189 663.7 388 82.7
THA.LOC104809921 Tarenaya hassleriana HOM05D006205 ORTHO05D007703 8.8e-189 663.7 387 82.4
BcaC01g04062 Brassica carinata HOM05D006205 ORTHO05D007703 1.1e-186 656.8 390 81.0
A03p37470 Brassica napus HOM05D006205 ORTHO05D007703 1.4e-186 656.4 390 81.0
BraA03t12906Z Brassica rapa HOM05D006205 ORTHO05D007703 9.1e-186 653.7 388 81.2
BolC3t16816H Brassica oleracea HOM05D006205 ORTHO05D007703 2.6e-185 652.1 388 80.9
C03p45470 Brassica napus HOM05D006205 ORTHO05D007703 1.3e-184 649.8 388 80.7
Gorai.002G228500 Gossypium raimondii HOM05D006205 ORTHO05D007703 8.8e-181 637.1 387 77.8
PGR142G1368 Punica granatum HOM05D006205 ORTHO05D007703 8.8e-181 637.1 386 77.7
Thecc.05G167100 Theobroma cacao HOM05D006205 ORTHO05D007703 1.5e-180 636.3 387 78.0
TPR.G4691 Trifolium pratense HOM05D006205 ORTHO05D007703 3.3e-180 635.2 387 78.3
Gohir.A01G194800 Gossypium hirsutum HOM05D006205 ORTHO05D007703 7.4e-180 634.0 387 77.3
Ciclev10031918m.g Citrus clementina HOM05D006205 ORTHO05D007703 9.7e-180 633.6 387 78.6
Sabra06G0041700 Salix brachista HOM05D006205 ORTHO05D007703 9.7e-180 633.6 386 78.2
Potri.006G058400 Populus trichocarpa HOM05D006205 ORTHO05D007703 2.8e-179 632.1 386 78.0
CSS0013544 Camellia sinensis var. sinensis HOM05D006205 ORTHO05D007703 3.7e-179 631.7 387 77.3
Duzib106G0917 Durio zibethinus HOM05D006205 ORTHO05D007703 3.7e-179 631.7 387 77.5
arahy.Tifrunner.gnm1.ann1.ARGW3J Arachis hypogaea HOM05D006205 ORTHO05D007703 8.2e-179 630.6 387 78.0
Potri.016G049700 Populus trichocarpa HOM05D006205 ORTHO05D007703 1.1e-178 630.2 386 76.9
arahy.Tifrunner.gnm1.ann1.68EW5P Arachis hypogaea HOM05D006205 ORTHO05D007703 1.8e-178 629.4 387 77.8
Ca_08497_v3 Cicer arietinum L. HOM05D006205 ORTHO05D007703 1.8e-178 629.4 387 77.3
Ca_29722_v3 Cicer arietinum L. HOM05D006205 ORTHO05D007703 1.8e-178 629.4 387 77.3
Gohir.D01G185000 Gossypium hirsutum HOM05D006205 ORTHO05D007703 2.4e-178 629.0 387 77.0
Eucgr.K01821 Eucalyptus grandis HOM05D006205 ORTHO05D007703 5.3e-178 627.9 387 77.3
Medtr7g092680 Medicago truncatula HOM05D006205 ORTHO05D007703 9.1e-178 627.1 387 77.5
Duzib093G1988 Durio zibethinus HOM05D006205 ORTHO05D007703 1.5e-177 626.3 387 76.7
QL07p022686 Quercus lobata HOM05D006205 ORTHO05D007703 3.5e-177 625.2 387 77.0
Haze_19942 Corylus avellana HOM05D006205 ORTHO05D007703 4.5e-177 624.8 386 77.2
QL93p2022_0017 Quercus lobata HOM05D006205 ORTHO05D007703 4.5e-177 624.8 416 72.6
Manes.09G031300 Manihot esculenta HOM05D006205 ORTHO05D007703 5.9e-177 624.4 387 75.7
Sabra16G0053600 Salix brachista HOM05D006205 ORTHO05D007703 5.9e-177 624.4 386 76.2
Actinidia17259 Actinidia chinensis HOM05D006205 ORTHO05D007703 7.7e-177 624.0 387 76.2
Glyma.19G144900 Glycine max HOM05D006205 ORTHO05D007703 1.3e-176 623.2 387 77.0
Lj1g0022121 Lotus japonicus HOM05D006205 ORTHO05D007703 2.2e-176 622.5 421 72.4
Lalb_Chr18g0047621 Lupinus albus HOM05D006205 ORTHO05D007703 3.8e-176 621.7 387 77.3
Nitab4.5_0006846g0010 Nicotiana tabacum HOM05D006205 ORTHO05D007703 5.0e-176 621.3 387 75.5
CiPaw.09G032800 Carya illinoinensis HOM05D006205 ORTHO05D007703 8.5e-176 620.5 387 76.5
Lju124A32T75 Lonicera japonica HOM05D006205 ORTHO05D007703 8.5e-176 620.5 387 76.5
Prupe.7G072500 Prunus persica HOM05D006205 ORTHO05D007703 8.5e-176 620.5 387 76.5
Hund19180 Selenicereus undatus HOM05D006205 ORTHO05D007703 8.5e-176 620.5 387 76.0
Dinv24098 Davidia involucrata HOM05D006205 ORTHO05D007703 1.1e-175 620.2 387 75.5
Phvul.001G139800 Phaseolus vulgaris HOM05D006205 ORTHO05D007703 1.4e-175 619.8 387 75.7
Psat3g069960 Pisum sativum HOM05D006205 ORTHO05D007703 1.4e-175 619.8 387 76.5
FvH4_6g22800 Fragaria vesca HOM05D006205 ORTHO05D007703 3.2e-175 618.6 386 76.7
FAN14G5729 Fragaria x ananassa HOM05D006205 ORTHO05D007703 3.2e-175 618.6 386 76.7
FAN02G0014 Fragaria x ananassa HOM05D006205 ORTHO05D007703 7.2e-175 617.5 386 76.4
Cpa.g.sc85.111 Carica papaya HOM05D006205 ORTHO05D007703 2.1e-174 615.9 387 76.7
VMungo1383G0076 Vigna mungo HOM05D006205 ORTHO05D007703 2.1e-174 615.9 387 75.5
MSTRG.26097 Avicennia marina HOM05D006205 ORTHO05D007703 2.7e-174 615.5 387 75.5
SalBow1G2518 Salvia bowleyana HOM05D006205 ORTHO05D007703 1.0e-173 613.6 404 72.5
DCAR_013564 Daucus carota HOM05D006205 ORTHO05D007703 1.8e-173 612.8 387 74.9
TAR623G1003 Trochodendron aralioides HOM05D006205 ORTHO05D007703 1.8e-173 612.8 386 75.9
PGSC0003DMG400012937 Solanum tuberosum HOM05D006205 ORTHO05D007703 3.0e-173 612.1 387 74.4
CAN.G85.9 Capsicum annuum HOM05D006205 ORTHO05D007703 6.7e-173 610.9 387 74.4
FAN05G5560 Fragaria x ananassa HOM05D006205 ORTHO05D007703 6.7e-173 610.9 386 75.9
Hma1.2p1_1575F.1_g291620 Hydrangea macrophylla HOM05D006205 ORTHO05D007703 6.7e-173 610.9 387 73.6
Sc25g0005160 Simmondsia chinensis HOM05D006205 ORTHO05D007703 1.5e-172 609.8 387 74.4
SGA_v2.0_scaffold94G28443 Striga asiatica HOM05D006205 ORTHO05D007703 1.5e-172 609.8 387 75.2
RcHm_v2.0_Chr3g0480421 Rosa chinensis HOM05D006205 ORTHO05D007703 2.0e-172 609.4 386 75.6
Cc06_g16310 Coffea canephora HOM05D006205 ORTHO05D007703 5.7e-172 607.8 386 74.1
Lsat_1_v5_gn_8_79241 Lactuca sativa HOM05D006205 ORTHO05D007703 7.4e-172 607.4 387 73.6
EL10Ac3g06974 Beta vulgaris HOM05D006205 ORTHO05D007703 2.2e-171 605.9 386 74.1
Migut.K00057 Erythranthe guttata HOM05D006205 ORTHO05D007703 2.2e-171 605.9 387 73.9
CANSAT64G2514 Cannabis sativa HOM05D006205 ORTHO05D007703 6.3e-171 604.4 386 74.6
Sed0025317 Sechium edule HOM05D006205 ORTHO05D007703 1.4e-170 603.2 387 74.4
vmacro09103 Vaccinium macrocarpon HOM05D006205 ORTHO05D007703 9.1e-170 600.5 397 72.8
Nn2g15532 Nelumbo nucifera HOM05D006205 ORTHO05D007703 2.0e-169 599.4 386 74.6
Solyc03g064030.3 Solanum lycopersicum HOM05D006205 ORTHO05D007703 4.5e-169 598.2 387 73.9
Sopen03g017680 Solanum pennellii HOM05D006205 ORTHO05D007703 5.9e-169 597.8 387 73.6
TWI74G1063 Tripterygium wilfordii HOM05D006205 ORTHO05D007703 5.9e-169 597.8 368 77.2
AUR62024356 Chenopodium quinoa HOM05D006205 ORTHO05D007703 1.0e-168 597.0 386 73.1
BcaB04g18694 Brassica carinata HOM05D006205 ORTHO05D007703 2.9e-168 595.5 367 79.3
ClCG10G017350 Citrullus lanatus HOM05D006205 ORTHO05D007703 5.5e-167 591.3 443 66.4
MELO3C009648.2 Cucumis melo HOM05D006205 ORTHO05D007703 5.5e-167 591.3 413 69.5
Aqoxy1G00212 Aquilegia oxysepala HOM05D006205 ORTHO05D007703 2.7e-166 589.0 387 71.3
HanXRQChr05g0132791 Helianthus annuus HOM05D006205 ORTHO05D007703 2.0e-164 582.8 387 70.8
AUR62025960 Chenopodium quinoa HOM05D006205 ORTHO05D007703 1.8e-162 576.2 386 71.2
PSO384G4504 Papaver somniferum HOM05D006205 ORTHO05D007703 2.4e-162 575.9 386 69.9
ATR0605G163 Amborella trichopoda HOM05D006205 ORTHO05D007703 1.6e-161 573.2 386 71.0
PSO339G0108 Papaver somniferum HOM05D006205 ORTHO05D007703 1.7e-160 569.7 388 69.1
CDE10G0043 Ceratophyllum demersum HOM05D006205 ORTHO05D007703 3.8e-160 568.5 386 70.2
unitig_899.g15081 Utricularia gibba HOM05D006205 ORTHO05D007703 2.3e-157 559.3 388 69.6
Zm00001eb236370 Zea mays HOM05D006205 ORTHO05D007703 2.4e-154 549.3 395 65.8
GSVIVG01033369001 Vitis vinifera HOM05D006205 ORTHO05D007703 1.2e-153 547.0 342 76.9
Os02g0195000 Oryza sativa ssp. japonica HOM05D006205 ORTHO05D007703 6.6e-152 541.2 395 64.3
SEGI_33856 Sequoiadendron giganteum HOM05D006205 ORTHO05D007703 6.6e-152 541.2 386 67.6
Nitab4.5_0000016g0140 Nicotiana tabacum HOM05D006205 ORTHO05D007703 1.2e-148 530.4 387 67.2
Cfa016888 Carpinus fangiana HOM05D006205 ORTHO05D007703 2.3e-144 516.2 331 75.2
Mapoly0096s0035 Marchantia polymorpha HOM05D006205 ORTHO05D007703 3.1e-141 505.8 388 63.7
MD12G1062300 Malus domestica HOM05D006205 ORTHO05D007703 2.0e-140 503.1 335 73.1
ECA236G0538 Erigeron canadensis HOM05D006205 ORTHO05D007703 2.6e-140 502.7 341 70.4
Pp3c3_27370 Physcomitrium patens HOM05D006205 ORTHO05D007703 4.1e-138 495.4 387 63.6
Ah.13g076130 Amaranthus hybridus HOM05D006205 ORTHO05D007703 3.5e-137 492.3 360 67.8
SMO334G0020 Selaginella moellendorffii HOM05D006205 ORTHO05D007703 3.0e-136 489.2 387 62.5
AagrBONN_evm.TU.Sc2ySwM_228.3151 Anthoceros agrestis HOM05D006205 ORTHO05D007703 6.8e-133 478.0 387 60.7
Rhsim04G0098500 Rhododendron simsii HOM05D006205 ORTHO05D007703 1.2e-132 477.2 432 56.9
SalBow1G2557 Salvia bowleyana HOM05D006205 ORTHO05D007703 1.2e-124 450.7 387 59.7
CBR_g25855 Chara braunii HOM05D006205 ORTHO05D007703 8.3e-123 444.5 397 56.9
Peaxi162Scf00285g00443 Petunia axillaris HOM05D006205 ORTHO05D007703 1.4e-122 443.7 387 59.2
CsaV3_3G039050 Cucumis sativus L. HOM05D006205 ORTHO05D007703 1.1e-119 434.1 279 75.6
COL.COLO4_36119 Corchorus olitorius HOM05D006205 ORTHO05D007703 1.9e-119 433.3 270 78.5
CARHR086730 Cardamine hirsuta HOM05D006205 ORTHO05D007703 5.3e-109 398.7 206 91.3
HPP92_023778 Vanilla planifolia HOM05D006205 ORTHO05D007703 1.9e-106 390.2 268 71.3
Dinv18116 Davidia involucrata HOM05D006205 ORTHO05D007703 1.8e-96 357.1 240 70.0
Glyma.02G176500 Glycine max HOM05D006205 ORTHO05D007703 2.0e-76 290.4 180 78.9
MBI04_g47239_MAGBIO Magnolia biondii HOM05D006205 ORTHO05D007703 4.7e-57 226.1 181 59.1
Actinidia33641 Actinidia chinensis HOM05D006205 ORTHO05D007703 7.7e-52 208.8 122 73.8
MD14G1062900 Malus domestica HOM05D006205 ORTHO05D007703 1.7e-51 207.6 127 73.2
MBI04_g14269_MAGBIO Magnolia biondii HOM05D006205 ORTHO05D007703 5.0e-51 206.1 182 56.6
Cre02.g076150 Chlamydomonas reinhardtii HOM05D006205 ORTHO05D007703 4.8e-46 189.5 323 38.4
MD14G1062700 Malus domestica HOM05D006205 ORTHO05D007703 2.0e-44 184.1 204 50.0
VMungo1080G0431 Vigna mungo HOM05D006205 ORTHO05D007703 2.0e-36 157.5 98 78.6
arahy.Tifrunner.gnm1.ann1.EV0IJD Arachis hypogaea HOM05D006205 ORTHO05D007703 6.8e-32 142.5 86 77.9
MD12G1062200 Malus domestica HOM05D006205 ORTHO05D007703 8.0e-25 119.0 56 92.9
VMungo0331G0486 Vigna mungo HOM05D006205 ORTHO05D007703 1.5e-23 114.8 108 55.6
Medtr0001s0010 Medicago truncatula HOM05D006205 ORTHO05D007703 2.5e-18 97.4 79 62.0
BcaC01g04094 Brassica carinata HOM05D001227 ORTHO05D001082 5.6e-18 96.3 162 40.7
Rhsim04G0098400 Rhododendron simsii HOM05D000259 ORTHO05D000155 8.3e-14 82.4 37 91.9
Glyma.02G176400 Glycine max HOM05D006205 ORTHO05D007703 1.1e-13 82.0 51 64.7


User provided reference genes

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