Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG3G5490 Aethionema arabicum HOM05D004031 ORTHO05D011186 1.4e-27 125.6 62 100.0
Aa31LG3G5450 Aethionema arabicum HOM05D004031 ORTHO05D011186 4.4e-26 120.6 62 95.2
Carub.0003s1134 Capsella rubella HOM05D004031 ORTHO05D011186 1.0e-22 109.4 62 85.5
BcaB04g18697 Brassica carinata HOM05D004031 ORTHO05D006678 1.7e-22 108.6 58 84.5
A03p37430 Brassica napus HOM05D004031 ORTHO05D011186 1.2e-20 102.4 58 82.8
BcaC01g04064 Brassica carinata HOM05D004031 ORTHO05D006678 1.6e-20 102.1 59 79.7
BolC3t16811H Brassica oleracea HOM05D004031 ORTHO05D006678 1.6e-20 102.1 59 79.7
C03p45440 Brassica napus HOM05D004031 ORTHO05D006678 4.7e-20 100.5 59 79.7
BraA03t12904Z Brassica rapa HOM05D004031 ORTHO05D006678 1.0e-19 99.4 60 81.7
BcaC05g29296 Brassica carinata HOM05D004031 ORTHO05D006678 1.3e-17 92.4 58 77.6
C05p55790 Brassica napus HOM05D004031 ORTHO05D006678 1.3e-17 92.4 58 77.6
GSVIVG01033459001 Vitis vinifera HOM05D004031 ORTHO05D011186 5.4e-16 87.0 62 71.0
Potri.016G060550 Populus trichocarpa HOM05D004031 ORTHO05D011186 1.2e-15 85.9 62 67.7
Manes.09G038400 Manihot esculenta HOM05D004031 ORTHO05D011186 2.7e-15 84.7 62 66.1
Thecc.05G176000 Theobroma cacao HOM05D004031 ORTHO05D011186 3.5e-15 84.3 62 67.7
Dinv16349 Davidia involucrata HOM05D004031 ORTHO05D006678 1.3e-14 82.4 60 66.7
Sabra06G0149700 Salix brachista HOM05D004031 ORTHO05D006678 3.9e-14 80.9 56 67.9
MD12G1054200 Malus domestica HOM05D004031 ORTHO05D011186 5.0e-14 80.5 60 65.0
Gohir.D01G124600 Gossypium hirsutum HOM05D004031 ORTHO05D011186 6.6e-14 80.1 62 64.5
Actinidia32416 Actinidia chinensis HOM05D004031 ORTHO05D006678 8.6e-14 79.7 57 61.4
CDE05G3199 Ceratophyllum demersum HOM05D004031 ORTHO05D011186 8.6e-14 79.7 62 62.9
Migut.J01860 Erythranthe guttata HOM05D004031 ORTHO05D011186 8.6e-14 79.7 58 62.1
Prupe.7G082600 Prunus persica HOM05D004031 ORTHO05D011186 8.6e-14 79.7 58 65.5
Sed0024429 Sechium edule HOM05D004031 ORTHO05D011186 8.6e-14 79.7 57 66.7
Lalb_Chr15g0079141 Lupinus albus HOM05D004031 ORTHO05D011186 1.5e-13 79.0 62 61.3
Duzib128G0401 Durio zibethinus HOM05D004031 ORTHO05D011186 1.9e-13 78.6 62 64.5
Gohir.A01G137400 Gossypium hirsutum HOM05D004031 ORTHO05D011186 1.9e-13 78.6 62 62.9
vmacro22628 Vaccinium macrocarpon HOM05D004031 ORTHO05D006678 1.9e-13 78.6 57 66.7
MELO3C009606.2 Cucumis melo HOM05D004031 ORTHO05D011186 3.3e-13 77.8 57 59.6
Cfa020139 Carpinus fangiana HOM05D004031 ORTHO05D006678 4.3e-13 77.4 56 67.9
Eucgr.K01857 Eucalyptus grandis HOM05D004031 ORTHO05D011186 4.3e-13 77.4 57 66.7
Phvul.001G144800 Phaseolus vulgaris HOM05D004031 ORTHO05D011186 4.3e-13 77.4 62 59.7
RcHm_v2.0_Chr3g0479131 Rosa chinensis HOM05D004031 ORTHO05D011186 7.3e-13 76.6 62 61.3
CsaV3_3G038610 Cucumis sativus L. HOM05D004031 ORTHO05D006678 1.2e-12 75.9 56 60.7
Hma1.2p1_0124F.1_g058300 Hydrangea macrophylla HOM05D004031 ORTHO05D011186 3.6e-12 74.3 57 63.2
Lj1g0020490 Lotus japonicus HOM05D004031 ORTHO05D011186 3.6e-12 74.3 57 63.2
CSS0013106 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D011186 4.7e-12 73.9 57 61.4
Glyma.19G150500 Glycine max HOM05D004031 ORTHO05D011186 4.7e-12 73.9 60 60.0
Medtr7g093770 Medicago truncatula HOM05D004031 ORTHO05D011186 4.7e-12 73.9 60 60.0
CiPaw.09G027900 Carya illinoinensis HOM05D004031 ORTHO05D011186 8.1e-12 73.2 62 59.7
Ciclev10013737m.g Citrus clementina HOM05D004031 ORTHO05D006678 1.1e-11 72.8 56 64.3
Nn7g35951 Nelumbo nucifera HOM05D004031 ORTHO05D011186 1.1e-11 72.8 54 63.0
Nn7g36859 Nelumbo nucifera HOM05D004031 ORTHO05D011186 3.1e-11 71.2 54 64.8
Nitab4.5_0000009g0260 Nicotiana tabacum HOM05D004031 ORTHO05D011186 1.5e-10 68.9 58 58.6
Nitab4.5_0007281g0010 Nicotiana tabacum HOM05D004031 ORTHO05D006678 1.5e-10 68.9 58 58.6
Cc06_g15560 Coffea canephora HOM05D004031 ORTHO05D011186 7.5e-10 66.6 61 57.4
Glyma.03G147100 Glycine max HOM05D004031 ORTHO05D011186 1.7e-09 65.5 61 54.1
Lj1A1132T32 Lonicera japonica HOM05D004031 ORTHO05D006678 1.6e-07 58.9 38 68.4
HPP92_024784 Vanilla planifolia HOM05D004031 ORTHO05D006678 1.6e-07 58.9 54 50.0
Hund06156 Selenicereus undatus HOM05D000159 ORTHO05D011186 2.1e-07 58.5 36 72.2
SEGI_01182 Sequoiadendron giganteum HOM05D004031 ORTHO05D011186 3.9e-06 54.3 37 62.2
SHI31744 Sapria himalayana HOM05D004031 ORTHO05D011186 5.1e-06 53.9 41 53.7


User provided reference genes

Program Settings