Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG3G5440 Aethionema arabicum HOM05D004031 ORTHO05D006678 0.0e+00 1322.0 688 100.0
AT3G12010 Arabidopsis thaliana HOM05D004031 ORTHO05D006678 0.0e+00 1096.6 690 82.8
Sp3g10240 Schrenkiella parvula HOM05D004031 ORTHO05D006678 0.0e+00 1087.8 690 82.8
Carub.0003s1135 Capsella rubella HOM05D004031 ORTHO05D006678 0.0e+00 1076.6 690 81.4
CARHR086570 Cardamine hirsuta HOM05D004031 ORTHO05D006678 2.3e-309 1065.1 680 81.6
BcaB04g18697 Brassica carinata HOM05D004031 ORTHO05D006678 8.5e-304 1046.6 690 79.9
BcaC01g04064 Brassica carinata HOM05D004031 ORTHO05D006678 1.4e-301 1039.3 690 78.7
C03p45440 Brassica napus HOM05D004031 ORTHO05D006678 1.8e-293 1012.3 690 77.4
BolC3t16811H Brassica oleracea HOM05D004031 ORTHO05D006678 9.4e-287 989.9 720 73.6
A03p37440 Brassica napus HOM05D004031 ORTHO05D006678 1.1e-282 976.5 686 75.7
THA.LOC104799283 Tarenaya hassleriana HOM05D004031 ORTHO05D006678 1.3e-280 969.5 684 73.8
BcaC05g29296 Brassica carinata HOM05D004031 ORTHO05D006678 1.7e-256 889.4 696 70.5
C05p55790 Brassica napus HOM05D004031 ORTHO05D006678 1.7e-256 889.4 696 70.5
BolC5t34246H Brassica oleracea HOM05D004031 ORTHO05D006678 1.7e-256 889.4 696 70.5
BraA03t12904Z Brassica rapa HOM05D004031 ORTHO05D006678 1.9e-250 869.4 661 72.3
AL3G23620 Arabidopsis lyrata HOM05D004031 ORTHO05D006678 9.2e-250 867.1 554 83.4
Thecc.05G175900 Theobroma cacao HOM05D004031 ORTHO05D006678 5.2e-237 824.7 750 58.9
Gorai.002G155200 Gossypium raimondii HOM05D004031 ORTHO05D006678 9.9e-236 820.5 735 59.3
Aa31LG3G5500 Aethionema arabicum HOM05D004031 ORTHO05D006678 2.2e-235 819.3 441 95.2
Gohir.A01G137300 Gossypium hirsutum HOM05D004031 ORTHO05D006678 3.8e-235 818.5 735 59.2
Gohir.D01G124700 Gossypium hirsutum HOM05D004031 ORTHO05D006678 4.9e-235 818.1 735 59.2
GSVIVG01033461001 Vitis vinifera HOM05D004031 ORTHO05D006678 6.6e-232 807.7 692 61.1
Potri.016G060500 Populus trichocarpa HOM05D004031 ORTHO05D006678 8.1e-230 800.8 741 57.6
Dinv16349 Davidia involucrata HOM05D004031 ORTHO05D006678 3.1e-229 798.9 693 61.2
Hma1.2p1_0124F.1_g058320 Hydrangea macrophylla HOM05D004031 ORTHO05D006678 2.0e-228 796.2 720 59.0
Manes.09G038300 Manihot esculenta HOM05D004031 ORTHO05D006678 1.3e-227 793.5 741 56.4
Potri.006G195000 Populus trichocarpa HOM05D004031 ORTHO05D006678 6.4e-227 791.2 692 59.2
RcHm_v2.0_Chr3g0479121 Rosa chinensis HOM05D004031 ORTHO05D006678 6.4e-227 791.2 726 58.7
Cfa020139 Carpinus fangiana HOM05D004031 ORTHO05D006678 3.2e-226 788.9 757 56.4
FvH4_6g21770 Fragaria vesca HOM05D004031 ORTHO05D006678 3.2e-226 788.9 734 58.2
TAR623G1150 Trochodendron aralioides HOM05D004031 ORTHO05D006678 3.9e-224 781.9 779 55.8
MD14G1053000 Malus domestica HOM05D004031 ORTHO05D006678 5.1e-224 781.6 747 57.2
Prupe.7G082700 Prunus persica HOM05D004031 ORTHO05D006678 6.7e-224 781.2 752 56.9
Ciclev10013737m.g Citrus clementina HOM05D004031 ORTHO05D006678 1.1e-223 780.4 737 57.4
CiPaw.10G024900 Carya illinoinensis HOM05D004031 ORTHO05D006678 2.8e-222 775.8 760 56.1
MD12G1054100 Malus domestica HOM05D004031 ORTHO05D006678 2.8e-222 775.8 756 56.7
Sc13g0002440 Simmondsia chinensis HOM05D004031 ORTHO05D006678 3.7e-222 775.4 731 56.1
PGR142G3960 Punica granatum HOM05D004031 ORTHO05D006678 6.2e-222 774.6 746 56.3
CANSAT64G2464 Cannabis sativa HOM05D004031 ORTHO05D006678 5.3e-221 771.5 739 56.7
CiPaw.09G027800 Carya illinoinensis HOM05D004031 ORTHO05D006678 6.9e-221 771.2 745 56.1
Atru.chr8.1164 Acer truncatum HOM05D004031 ORTHO05D006678 2.2e-219 766.1 754 56.4
TWI74G0357 Tripterygium wilfordii HOM05D004031 ORTHO05D006678 4.9e-219 765.0 731 54.4
FAN05G0520 Fragaria x ananassa HOM05D004031 ORTHO05D006678 6.4e-219 764.6 793 54.1
Lj1g0024200 Lotus japonicus HOM05D004031 ORTHO05D006678 6.4e-219 764.6 731 55.1
Glyma.03G147000 Glycine max HOM05D004031 ORTHO05D006678 2.4e-218 762.7 736 55.0
CSS0004189 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 4.2e-218 761.9 744 55.4
TPR.G13372 Trifolium pratense HOM05D004031 ORTHO05D006678 1.2e-217 760.4 721 56.0
Eucgr.K01855 Eucalyptus grandis HOM05D004031 ORTHO05D006678 1.6e-217 760.0 744 55.0
FAN09G1850 Fragaria x ananassa HOM05D004031 ORTHO05D006678 4.6e-217 758.4 762 55.2
Dinv24047 Davidia involucrata HOM05D004031 ORTHO05D006678 6.0e-217 758.1 715 58.6
arahy.Tifrunner.gnm1.ann1.YX753W Arachis hypogaea HOM05D004031 ORTHO05D006678 1.0e-216 757.3 732 54.8
Lalb_Chr15g0079131 Lupinus albus HOM05D004031 ORTHO05D006678 1.0e-216 757.3 727 55.0
vmacro22628 Vaccinium macrocarpon HOM05D004031 ORTHO05D006678 1.0e-216 757.3 778 53.9
Phvul.001G144700 Phaseolus vulgaris HOM05D004031 ORTHO05D006678 3.9e-216 755.4 709 55.4
MELO3C009604.2 Cucumis melo HOM05D004031 ORTHO05D006678 3.3e-215 752.3 721 55.9
Sed0017241 Sechium edule HOM05D004031 ORTHO05D006678 1.3e-214 750.4 723 55.0
Aqoxy1G00041 Aquilegia oxysepala HOM05D004031 ORTHO05D006678 2.1e-214 749.6 713 56.0
EL10Ac3g06876 Beta vulgaris HOM05D004031 ORTHO05D006678 2.8e-214 749.2 733 54.3
ECA233G4423 Erigeron canadensis HOM05D004031 ORTHO05D006678 3.7e-214 748.8 721 55.6
Psat3g066880 Pisum sativum HOM05D004031 ORTHO05D006678 3.7e-214 748.8 715 56.2
Ca_08544_v3 Cicer arietinum L. HOM05D004031 ORTHO05D006678 8.2e-214 747.7 727 54.7
Medtr7g093740 Medicago truncatula HOM05D004031 ORTHO05D006678 8.2e-214 747.7 716 55.4
HanXRQChr13g0398361 Helianthus annuus HOM05D004031 ORTHO05D006678 1.1e-213 747.3 730 54.8
Sabra16G0063400 Salix brachista HOM05D004031 ORTHO05D006678 1.4e-213 746.9 729 55.3
arahy.Tifrunner.gnm1.ann1.4B2YIP Arachis hypogaea HOM05D004031 ORTHO05D006678 2.4e-213 746.1 759 53.1
Glyma.19G150400 Glycine max HOM05D004031 ORTHO05D006678 6.9e-213 744.6 760 52.4
Oeu057586.3 Olea europaea HOM05D004031 ORTHO05D006678 2.0e-212 743.0 740 53.4
Sabra06G0149700 Salix brachista HOM05D004031 ORTHO05D006678 4.5e-212 741.9 741 54.1
AUR62012010 Chenopodium quinoa HOM05D004031 ORTHO05D006678 5.8e-212 741.5 723 55.2
Cc06_g15550 Coffea canephora HOM05D004031 ORTHO05D006678 8.4e-211 737.6 749 53.8
MSTRG.19923 Avicennia marina HOM05D004031 ORTHO05D006678 3.2e-210 735.7 721 54.4
Migut.J01861 Erythranthe guttata HOM05D004031 ORTHO05D006678 1.2e-209 733.8 680 55.7
SGA_v2.0_scaffold105G30510 Striga asiatica HOM05D004031 ORTHO05D006678 6.0e-209 731.5 697 55.2
Lsat_1_v5_gn_6_36500 Lactuca sativa HOM05D004031 ORTHO05D006678 1.8e-208 729.9 697 55.2
Nn7g35952 Nelumbo nucifera HOM05D004031 ORTHO05D006678 6.7e-208 728.0 781 51.9
Nitab4.5_0007281g0010 Nicotiana tabacum HOM05D004031 ORTHO05D006678 1.1e-207 727.2 743 52.8
Sopen03g011490 Solanum pennellii HOM05D004031 ORTHO05D006678 1.1e-207 727.2 748 52.4
Thhalv10020623m.g Eutrema salsugineum HOM05D004031 ORTHO05D006678 7.4e-207 724.5 489 80.0
CAN.G454.1 Capsicum annuum HOM05D004031 ORTHO05D006678 1.3e-206 723.8 740 53.0
FAN02G1852 Fragaria x ananassa HOM05D004031 ORTHO05D006678 2.8e-206 722.6 805 51.7
Rhsim03G0003600 Rhododendron simsii HOM05D004031 ORTHO05D006678 2.6e-204 716.1 762 52.8
DCAR_009690 Daucus carota HOM05D004031 ORTHO05D006678 1.7e-198 696.8 770 51.0
PSO339G3947 Papaver somniferum HOM05D004031 ORTHO05D006678 3.7e-198 695.7 758 51.1
VMungo1383G1586 Vigna mungo HOM05D004031 ORTHO05D006678 3.7e-198 695.7 665 54.9
PSO384G3799 Papaver somniferum HOM05D004031 ORTHO05D006678 8.2e-198 694.5 758 50.9
AUR62015326 Chenopodium quinoa HOM05D004031 ORTHO05D006678 9.1e-197 691.0 683 54.6
MBI13_g29636_MAGBIO Magnolia biondii HOM05D004031 ORTHO05D006678 1.1e-194 684.1 771 49.4
SalBow6G5892 Salvia bowleyana HOM05D004031 ORTHO05D006678 1.0e-192 677.6 757 50.1
Actinidia32416 Actinidia chinensis HOM05D004031 ORTHO05D006678 1.4e-192 677.2 701 53.5
HPP92_024784 Vanilla planifolia HOM05D004031 ORTHO05D006678 3.3e-191 672.5 760 49.7
ATR0598G228 Amborella trichopoda HOM05D004031 ORTHO05D006678 8.2e-190 667.9 768 48.2
Os10g0400900 Oryza sativa ssp. japonica HOM05D004031 ORTHO05D006678 2.1e-185 653.3 715 48.0
Lju124A22T15 Lonicera japonica HOM05D004031 ORTHO05D006678 6.3e-182 641.7 729 49.1
Lj1A1132T32 Lonicera japonica HOM05D004031 ORTHO05D006678 7.7e-180 634.8 729 49.0
Sed0010020 Sechium edule HOM05D004031 ORTHO05D006678 8.8e-176 621.3 709 49.2
Haze_20030 Corylus avellana HOM05D004031 ORTHO05D006678 4.8e-174 615.5 922 42.7
CDE05G0445 Ceratophyllum demersum HOM05D004031 ORTHO05D006678 3.2e-170 602.8 700 47.3
FAN14G1892 Fragaria x ananassa HOM05D004031 ORTHO05D006678 4.4e-167 592.4 624 53.5
Solyc03g053010.4 Solanum lycopersicum HOM05D004031 ORTHO05D006678 9.8e-159 564.7 622 51.3
Hma1.2p1_0124F.1_g058310 Hydrangea macrophylla HOM05D004031 ORTHO05D006678 1.2e-156 557.8 429 64.3
Pp3c6_28540 Physcomitrium patens HOM05D004031 ORTHO05D006678 7.8e-156 555.1 725 42.2
unitig_21.g20577 Utricularia gibba HOM05D004031 ORTHO05D006678 8.9e-152 541.6 667 46.5
SMO143G0277 Selaginella moellendorffii HOM05D004031 ORTHO05D006678 1.1e-149 534.6 693 43.6
Mapoly0005s0167 Marchantia polymorpha HOM05D004031 ORTHO05D006678 1.1e-146 524.6 814 38.2
CsaV3_3G038610 Cucumis sativus L. HOM05D004031 ORTHO05D006678 2.8e-145 520.0 564 51.4
ClCG10G017700 Citrullus lanatus HOM05D004031 ORTHO05D006678 9.8e-143 511.5 392 65.1
Zm00001eb048600 Zea mays HOM05D004031 ORTHO05D006678 2.1e-137 493.8 581 46.6
Peaxi162Scf00463g00518 Petunia axillaris HOM05D004031 ORTHO05D006678 3.9e-131 473.0 612 46.6
QL07p024699 Quercus lobata HOM05D004031 ORTHO05D006678 1.2e-119 434.9 503 52.1
Nitab4.5_0000009g0250 Nicotiana tabacum HOM05D004031 ORTHO05D006678 6.4e-110 402.5 494 48.6
QL07p024684 Quercus lobata HOM05D004031 ORTHO05D006678 1.1e-98 365.2 255 67.8
SEGI_16646 Sequoiadendron giganteum HOM05D004031 ORTHO05D006678 2.1e-92 344.4 573 38.0
SHI31751 Sapria himalayana HOM05D004031 ORTHO05D006678 1.6e-89 334.7 496 45.6
Cpa.g.sc85.42 Carica papaya HOM05D004031 ORTHO05D006678 8.8e-67 259.2 189 65.1
Psat7g023080 Pisum sativum HOM05D004031 ORTHO05D006678 8.8e-67 259.2 338 42.9
Cpa.g.c40176 Carica papaya HOM05D004031 ORTHO05D006678 5.7e-58 229.9 201 62.2
TAR623G0223 Trochodendron aralioides HOM05D004031 ORTHO05D006678 1.0e-51 209.1 173 61.3
CSS0049250 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 3.0e-43 181.0 118 69.5
CSS0030127 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 1.7e-41 175.3 128 61.7
Aa31LG3G5510 Aethionema arabicum HOM05D004031 ORTHO05D006678 8.3e-41 172.9 91 95.6
Peaxi162Scf00463g00519 Petunia axillaris HOM05D004031 ORTHO05D006678 5.4e-40 170.2 136 57.4
Solyc03g053000.4 Solanum lycopersicum HOM05D004031 ORTHO05D006678 2.0e-39 168.3 136 58.1
SHI31745 Sapria himalayana HOM05D004031 ORTHO05D006678 8.6e-38 162.9 138 54.3
Nitab4.5_0000009g0260 Nicotiana tabacum HOM05D004031 ORTHO05D011186 1.5e-37 162.2 126 57.9
BcaB06g25555 Brassica carinata HOM05D004031 ORTHO05D006678 9.5e-37 159.5 105 73.3
Psat4g142720 Pisum sativum HOM05D003784 ORTHO05D004345 2.0e-34 151.8 99 70.7
PRCOL_00003629 Prasinoderma coloniale HOM05D004031 ORTHO05D006678 6.4e-33 146.7 707 23.8
C05p55850 Brassica napus HOM05D004031 ORTHO05D006678 5.6e-29 133.7 89 70.8
BolC5t34254H Brassica oleracea HOM05D004031 ORTHO05D006678 5.6e-29 133.7 89 70.8
Psat4g142800 Pisum sativum HOM05D003784 ORTHO05D004345 9.5e-29 132.9 86 70.9
CSS0030002 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 6.2e-28 130.2 117 58.1
CBR_g44463 Chara braunii HOM05D000019 ORTHO05D000002 1.5e-26 125.6 158 40.5
CBR_g32657 Chara braunii HOM05D004031 ORTHO05D006678 7.1e-24 116.7 239 33.1
Nn3g18463 Nelumbo nucifera HOM05D004031 ORTHO05D006678 7.1e-24 116.7 74 70.3
Cre08.g370250 Chlamydomonas reinhardtii HOM05D004031 ORTHO05D006678 1.4e-19 102.4 542 22.0
CBR_g32659 Chara braunii HOM05D001409 ORTHO05D001511 1.7e-17 95.5 153 36.6
MCO13G277 Micromonas commoda HOM05D004031 ORTHO05D006678 2.5e-13 81.6 417 24.5
SHI31749 Sapria himalayana HOM05D003430 ORTHO05D004809 3.4e-10 71.2 58 53.4
Nn2g13219 Nelumbo nucifera HOM05D004031 ORTHO05D006678 3.8e-09 67.8 46 63.0
SHI31750 Sapria himalayana HOM05D003430 ORTHO05D014065 2.1e-07 62.0 71 46.5


User provided reference genes

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