Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG3G5420 Aethionema arabicum HOM05D005910 ORTHO05D007088 9.2e-102 373.6 197 100.0
CARHR086590 Cardamine hirsuta HOM05D005910 ORTHO05D007088 5.6e-99 364.4 197 97.0
Carub.0003s1137 Capsella rubella HOM05D005910 ORTHO05D007088 7.3e-99 364.0 197 97.0
AT3G12030 Arabidopsis thaliana HOM05D005910 ORTHO05D007088 3.6e-98 361.7 197 96.4
AL3G23640 Arabidopsis lyrata HOM05D005910 ORTHO05D007088 6.1e-98 360.9 197 96.4
CARHR206550 Cardamine hirsuta HOM05D005910 ORTHO05D007088 6.1e-98 360.9 197 95.4
AL6G16750 Arabidopsis lyrata HOM05D005910 ORTHO05D007088 2.3e-97 359.0 197 94.9
AT5G06660 Arabidopsis thaliana HOM05D005910 ORTHO05D007088 4.0e-97 358.2 197 94.9
Sp6g36210 Schrenkiella parvula HOM05D005910 ORTHO05D007088 1.5e-96 356.3 197 94.4
BcaC09g48209 Brassica carinata HOM05D005910 ORTHO05D007088 2.0e-96 355.9 197 96.4
Thhalv10022159m.g Eutrema salsugineum HOM05D005910 ORTHO05D007088 2.0e-96 355.9 197 96.4
Carub.0006s0554 Capsella rubella HOM05D005910 ORTHO05D007088 2.6e-96 355.5 197 93.4
THA.LOC104799285 Tarenaya hassleriana HOM05D005910 ORTHO05D007088 2.6e-96 355.5 197 94.4
BraA01t04144Z Brassica rapa HOM05D005910 ORTHO05D007088 3.4e-96 355.1 197 95.4
Sp3g10260 Schrenkiella parvula HOM05D005910 ORTHO05D007088 4.4e-96 354.8 197 96.4
BolC1t05270H Brassica oleracea HOM05D005910 ORTHO05D007088 1.3e-95 353.2 197 94.9
BcaB04g21099 Brassica carinata HOM05D005910 ORTHO05D007088 1.7e-95 352.8 198 94.4
Thhalv10016091m.g Eutrema salsugineum HOM05D005910 ORTHO05D007088 2.2e-95 352.4 197 92.9
Cpa.g.sc85.46 Carica papaya HOM05D005910 ORTHO05D007088 3.6e-90 335.1 197 88.8
Atru.chr8.1156 Acer truncatum HOM05D005910 ORTHO05D007088 5.4e-86 321.2 197 86.8
ClCG10G017690 Citrullus lanatus HOM05D005910 ORTHO05D007088 3.9e-84 315.1 194 86.1
Sed0016712 Sechium edule HOM05D005910 ORTHO05D007088 6.6e-84 314.3 194 84.5
Dinv16345 Davidia involucrata HOM05D005910 ORTHO05D007088 3.3e-83 312.0 197 83.8
Gohir.A09G128900 Gossypium hirsutum HOM05D005910 ORTHO05D007088 3.3e-83 312.0 194 85.6
Manes.09G037701 Manihot esculenta HOM05D005910 ORTHO05D007088 4.3e-83 311.6 194 86.6
MELO3C009607.2 Cucumis melo HOM05D005910 ORTHO05D007088 5.6e-83 311.2 194 83.5
Gohir.D09G124900 Gossypium hirsutum HOM05D005910 ORTHO05D007088 1.6e-82 309.7 194 85.1
Gorai.006G143800 Gossypium raimondii HOM05D005910 ORTHO05D007088 1.6e-82 309.7 194 85.1
PGR142G2565 Punica granatum HOM05D005910 ORTHO05D007088 2.8e-82 308.9 194 84.5
COL.COLO4_29362 Corchorus olitorius HOM05D005910 ORTHO05D007088 3.6e-82 308.5 194 84.5
CiPaw.09G028200 Carya illinoinensis HOM05D005910 ORTHO05D007088 2.3e-81 305.8 194 84.5
Thecc.05G175100 Theobroma cacao HOM05D005910 ORTHO05D007088 2.3e-81 305.8 194 84.0
QL07p024560 Quercus lobata HOM05D005910 ORTHO05D007088 3.1e-81 305.4 197 82.7
DCAR_019862 Daucus carota HOM05D005910 ORTHO05D007088 5.2e-81 304.7 191 83.2
CSS0007798 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 1.2e-80 303.5 197 82.2
FAN02G0902 Fragaria x ananassa HOM05D005910 ORTHO05D007088 1.2e-80 303.5 194 83.0
Glyma.16G043900 Glycine max HOM05D005910 ORTHO05D007088 1.2e-80 303.5 190 82.1
FAN05G0623 Fragaria x ananassa HOM05D005910 ORTHO05D007088 2.0e-80 302.8 194 83.0
FAN14G5103 Fragaria x ananassa HOM05D005910 ORTHO05D007088 2.0e-80 302.8 194 83.0
Lalb_Chr22g0359441 Lupinus albus HOM05D005910 ORTHO05D007088 3.4e-80 302.0 190 83.2
FvH4_6g21840 Fragaria vesca HOM05D005910 ORTHO05D007088 4.4e-80 301.6 194 82.5
Psat3g091080 Pisum sativum HOM05D005910 ORTHO05D007088 4.4e-80 301.6 190 83.7
CANSAT64G0849 Cannabis sativa HOM05D005910 ORTHO05D007088 5.8e-80 301.2 194 83.0
Oeu057587.1 Olea europaea HOM05D005910 ORTHO05D007088 9.9e-80 300.4 191 81.2
Prupe.7G082200 Prunus persica HOM05D005910 ORTHO05D007088 9.9e-80 300.4 197 83.2
Duzib106G1486 Durio zibethinus HOM05D005910 ORTHO05D007088 1.3e-79 300.1 194 82.5
CiPaw.10G025100 Carya illinoinensis HOM05D005910 ORTHO05D007088 1.7e-79 299.7 194 84.0
Ca_08246_v3 Cicer arietinum L. HOM05D005910 ORTHO05D007088 2.2e-79 299.3 190 82.6
Phvul.001G097100 Phaseolus vulgaris HOM05D005910 ORTHO05D007088 2.2e-79 299.3 190 82.6
Medtr7g085050 Medicago truncatula HOM05D005910 ORTHO05D007088 2.9e-79 298.9 190 82.6
VMungo1383G3424 Vigna mungo HOM05D005910 ORTHO05D007088 2.9e-79 298.9 190 82.1
RcHm_v2.0_Chr3g0479191 Rosa chinensis HOM05D005910 ORTHO05D007088 3.7e-79 298.5 194 83.0
Hma1.2p1_0124F.1_g058350 Hydrangea macrophylla HOM05D005910 ORTHO05D007088 4.9e-79 298.1 191 82.2
Lj1g0011929 Lotus japonicus HOM05D005910 ORTHO05D007088 4.9e-79 298.1 190 82.6
TPR.G5912 Trifolium pratense HOM05D005910 ORTHO05D007088 4.9e-79 298.1 190 82.6
TWI77G0716 Tripterygium wilfordii HOM05D005910 ORTHO05D007088 4.9e-79 298.1 194 82.5
Glyma.19G108300 Glycine max HOM05D005910 ORTHO05D007088 8.3e-79 297.4 190 81.6
MD12G1054500 Malus domestica HOM05D005910 ORTHO05D007088 8.3e-79 297.4 194 80.9
Actinidia17287 Actinidia chinensis HOM05D005910 ORTHO05D007088 2.4e-78 295.8 197 82.2
CAN.G960.19 Capsicum annuum HOM05D005910 ORTHO05D007088 2.4e-78 295.8 195 78.5
Rhsim04G0093900 Rhododendron simsii HOM05D005910 ORTHO05D007088 3.2e-78 295.4 194 82.5
Cc06_g15530 Coffea canephora HOM05D005910 ORTHO05D007088 4.1e-78 295.0 197 82.2
Rhsim04G0095300 Rhododendron simsii HOM05D005910 ORTHO05D007088 5.4e-78 294.7 194 82.5
Lalb_Chr14g0364291 Lupinus albus HOM05D005910 ORTHO05D007088 9.2e-78 293.9 190 81.1
Solyc10g079000.1 Solanum lycopersicum HOM05D005910 ORTHO05D007088 1.2e-77 293.5 190 81.1
Sopen10g029620 Solanum pennellii HOM05D005910 ORTHO05D007088 1.2e-77 293.5 190 81.1
PGSC0003DMG400011451 Solanum tuberosum HOM05D005910 ORTHO05D007088 1.2e-77 293.5 190 81.1
GSVIVG01033465001 Vitis vinifera HOM05D005910 ORTHO05D007088 2.1e-77 292.7 191 81.7
CsaV3_3G038630 Cucumis sativus L. HOM05D005910 ORTHO05D007088 3.5e-77 292.0 180 83.9
Actinidia38597 Actinidia chinensis HOM05D005910 ORTHO05D007088 4.6e-77 291.6 197 80.7
PSO478G2464 Papaver somniferum HOM05D005910 ORTHO05D007088 4.6e-77 291.6 197 77.7
SGA_v2.0_scaffold69G23042 Striga asiatica HOM05D005910 ORTHO05D007088 4.6e-77 291.6 194 79.9
MSTRG.19925 Avicennia marina HOM05D005910 ORTHO05D007088 1.0e-76 290.4 190 80.5
Lsat_1_v5_gn_2_56160 Lactuca sativa HOM05D005910 ORTHO05D007088 6.6e-76 287.7 192 80.7
Manes.08G042400 Manihot esculenta HOM05D005910 ORTHO05D007088 1.1e-75 287.0 194 81.4
Migut.J01866 Erythranthe guttata HOM05D005910 ORTHO05D007088 7.3e-75 284.3 194 78.9
TAR623G1561 Trochodendron aralioides HOM05D005910 ORTHO05D007088 1.6e-74 283.1 191 80.6
Haze_20022 Corylus avellana HOM05D005910 ORTHO05D007088 6.2e-74 281.2 194 79.4
Haze_20025 Corylus avellana HOM05D005910 ORTHO05D007088 6.2e-74 281.2 194 79.4
Peaxi162Scf00463g00044 Petunia axillaris HOM05D005910 ORTHO05D007088 1.1e-73 280.4 197 77.2
Aqoxy7G00427 Aquilegia oxysepala HOM05D005910 ORTHO05D007088 1.4e-73 280.0 190 81.1
unitig_26.g10040 Utricularia gibba HOM05D005910 ORTHO05D007088 3.1e-73 278.9 195 76.4
TAR369G0766 Trochodendron aralioides HOM05D005910 ORTHO05D007088 6.8e-73 277.7 191 79.1
AUR62012008 Chenopodium quinoa HOM05D005910 ORTHO05D007088 1.2e-72 276.9 189 77.2
Sc13g0002410 Simmondsia chinensis HOM05D005910 ORTHO05D007088 1.2e-72 276.9 197 78.2
Nitab4.5_0009361g0020 Nicotiana tabacum HOM05D005910 ORTHO05D007088 2.6e-72 275.8 197 74.6
Potri.016G060300 Populus trichocarpa HOM05D005910 ORTHO05D007088 4.4e-72 275.0 197 75.6
Nitab4.5_0000009g0230 Nicotiana tabacum HOM05D005910 ORTHO05D007088 7.6e-72 274.2 197 74.6
Sed0026900 Sechium edule HOM05D005910 ORTHO05D007088 7.6e-72 274.2 197 75.1
AUR62015329 Chenopodium quinoa HOM05D005910 ORTHO05D007088 9.9e-72 273.9 189 76.2
ECA238G3575 Erigeron canadensis HOM05D005910 ORTHO05D007088 4.9e-71 271.6 190 77.4
Cfa020141 Carpinus fangiana HOM05D005910 ORTHO05D007088 1.1e-70 270.4 194 76.3
SHI31753 Sapria himalayana HOM05D005910 ORTHO05D007088 2.7e-69 265.8 185 77.8
EL10Ac3g06882 Beta vulgaris HOM05D005910 ORTHO05D007088 3.5e-69 265.4 188 73.9
HanXRQChr14g0438251 Helianthus annuus HOM05D005910 ORTHO05D007088 2.3e-68 262.7 190 75.3
HPP92_021275 Vanilla planifolia HOM05D005910 ORTHO05D007088 2.5e-67 259.2 198 70.2
Lsat_1_v5_gn_6_36581 Lactuca sativa HOM05D005910 ORTHO05D007088 9.6e-67 257.3 192 73.4
vmacro22120 Vaccinium macrocarpon HOM05D005910 ORTHO05D007088 9.6e-67 257.3 175 79.4
ATR0598G129 Amborella trichopoda HOM05D005910 ORTHO05D007088 1.1e-65 253.8 189 73.5
Pp3c21_11350 Physcomitrium patens HOM05D005910 ORTHO05D007088 5.3e-65 251.5 187 69.5
Mapoly0107s0023 Marchantia polymorpha HOM05D005910 ORTHO05D007088 7.6e-64 247.7 186 69.9
HanXRQChr03g0075461 Helianthus annuus HOM05D005910 ORTHO05D007088 4.2e-62 241.9 198 69.7
Zm00001eb055560 Zea mays HOM05D005910 ORTHO05D007088 5.4e-62 241.5 195 66.2
Zm00001eb215980 Zea mays HOM05D005910 ORTHO05D007088 1.6e-61 240.0 197 64.0
AagrBONN_evm.TU.Sc2ySwM_117.1513 Anthoceros agrestis HOM05D005910 ORTHO05D007088 2.7e-61 239.2 191 66.5
Ciclev10013918m.g Citrus clementina HOM05D005910 ORTHO05D007088 5.1e-60 235.0 137 89.8
SMO367G0437 Selaginella moellendorffii HOM05D005910 ORTHO05D007088 1.1e-59 233.8 186 66.1
Os03g0721400 Oryza sativa ssp. japonica HOM05D005910 ORTHO05D007088 1.5e-59 233.4 205 61.0
Dinv24042 Davidia involucrata HOM05D005910 ORTHO05D007088 1.8e-57 226.5 197 68.0
Lj1P1133T16 Lonicera japonica HOM05D005910 ORTHO05D007088 3.4e-56 222.2 137 84.7
Sabra16G0063200 Salix brachista HOM05D005910 ORTHO05D007088 3.8e-55 218.8 137 83.2
CBR_g49549 Chara braunii HOM05D005910 ORTHO05D007088 2.4e-54 216.1 186 59.1
CSS0031188 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 8.7e-52 207.6 199 61.8
SEGI_08450 Sequoiadendron giganteum HOM05D005910 ORTHO05D007088 4.0e-49 198.7 167 65.9
CSS0042896 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 7.6e-48 194.5 190 61.1
Actinidia38594 Actinidia chinensis HOM05D005910 ORTHO05D007088 1.1e-43 180.6 123 81.3
MD14G1053500 Malus domestica HOM05D005910 ORTHO05D007088 5.8e-40 168.3 115 78.3
CSS0024230 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 7.6e-40 167.9 202 52.0
MD11G1118600 Malus domestica HOM05D005910 ORTHO05D007088 6.5e-39 164.9 123 71.5
DCAR_009688 Daucus carota HOM05D005910 ORTHO05D007088 7.9e-37 157.9 102 78.4
Haze_26182 Corylus avellana HOM05D005910 ORTHO05D007088 2.4e-33 146.4 166 45.2
MD03G1239200 Malus domestica HOM05D005910 ORTHO05D007088 1.9e-30 136.7 135 59.3
QL03p020127 Quercus lobata HOM05D005910 ORTHO05D007088 2.1e-29 133.3 107 69.2
MD00G1019800 Malus domestica HOM05D005910 ORTHO05D007088 6.7e-28 128.3 93 71.0
QL07p006238 Quercus lobata HOM05D005910 ORTHO05D007088 1.5e-27 127.1 107 66.4
Glyma.07G000600 Glycine max HOM05D005910 ORTHO05D007088 3.2e-22 109.4 75 82.7
CDE06G1328 Ceratophyllum demersum HOM05D005910 ORTHO05D007088 5.5e-22 108.6 78 74.4
PRCOL_00005630 Prasinoderma coloniale HOM05D005910 ORTHO05D007088 3.7e-18 95.9 157 33.8
AUR62043130 Chenopodium quinoa HOM05D005910 ORTHO05D007088 1.2e-16 90.9 79 67.1
Sabra08G0162900 Salix brachista HOM05D003359 ORTHO05D007088 1.3e-15 87.4 45 88.9
Cre03.g182900 Chlamydomonas reinhardtii HOM05D005910 ORTHO05D007088 3.8e-15 85.9 162 33.3
HanXRQChr13g0398341 Helianthus annuus HOM05D005910 ORTHO05D007088 7.0e-09 65.1 98 45.9
SGA_v2.0_scaffold131G34402 Striga asiatica HOM05D005910 ORTHO05D007088 3.2e-06 56.2 54 64.8
SGA_v2.0_scaffold472G52090 Striga asiatica HOM05D005910 ORTHO05D007088 5.5e-06 55.5 54 64.8


User provided reference genes

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