Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG3G5080 Aethionema arabicum HOM05D003943 ORTHO05D004753 2.0e-135 485.7 243 100.0
THA.LOC104809953 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 1.8e-107 392.9 200 97.0
THA.LOC104826802 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 1.8e-107 392.9 200 97.0
Aa31sc52G210 Aethionema arabicum HOM05D003943 ORTHO05D004753 2.4e-107 392.5 200 97.0
A10p30010 Brassica napus HOM05D003943 ORTHO05D004753 4.4e-106 388.3 199 96.0
C09p70420 Brassica napus HOM05D003943 ORTHO05D004753 4.4e-106 388.3 199 96.0
BolC9t59788H Brassica oleracea HOM05D003943 ORTHO05D004753 4.4e-106 388.3 199 96.0
BraA10t45041Z Brassica rapa HOM05D003943 ORTHO05D004753 4.4e-106 388.3 199 96.0
Sp6g36490 Schrenkiella parvula HOM05D003943 ORTHO05D004753 4.4e-106 388.3 200 95.5
AL6G16440 Arabidopsis lyrata HOM05D003943 ORTHO05D004753 9.9e-106 387.1 200 95.5
AT5G06360 Arabidopsis thaliana HOM05D003943 ORTHO05D004753 9.9e-106 387.1 200 95.5
Carub.0006s0525 Capsella rubella HOM05D003943 ORTHO05D004753 9.9e-106 387.1 200 96.0
BcaB05g21673 Brassica carinata HOM05D003943 ORTHO05D004753 1.3e-105 386.7 199 95.5
C02p02670 Brassica napus HOM05D003943 ORTHO05D004753 1.3e-105 386.7 199 95.5
BolC2t06233H Brassica oleracea HOM05D003943 ORTHO05D004753 1.3e-105 386.7 199 95.5
BraA02t04878Z Brassica rapa HOM05D003943 ORTHO05D004753 1.3e-105 386.7 199 95.5
BcaC03g13169 Brassica carinata HOM05D003943 ORTHO05D004753 2.2e-105 386.0 199 95.0
Thhalv10014439m.g Eutrema salsugineum HOM05D003943 ORTHO05D004753 9.2e-104 380.6 200 94.0
Sabra16G0070600 Salix brachista HOM05D003943 ORTHO05D004753 1.6e-103 379.8 200 93.5
Sabra16G0072800 Salix brachista HOM05D003943 ORTHO05D004753 1.6e-103 379.8 200 93.5
Potri.006G203400 Populus trichocarpa HOM05D003943 ORTHO05D004753 2.7e-103 379.0 200 93.0
Manes.01G025400 Manihot esculenta HOM05D003943 ORTHO05D004753 3.5e-103 378.6 200 92.5
Potri.016G070400 Populus trichocarpa HOM05D003943 ORTHO05D004753 4.6e-103 378.3 200 92.5
Duzib093G1950 Durio zibethinus HOM05D003943 ORTHO05D004753 6.0e-103 377.9 200 92.0
Gohir.A09G134200 Gossypium hirsutum HOM05D003943 ORTHO05D004753 6.0e-103 377.9 200 92.0
Gorai.006G149400 Gossypium raimondii HOM05D003943 ORTHO05D004753 6.0e-103 377.9 200 92.0
TWI77G0554 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 6.0e-103 377.9 200 92.5
Gohir.D01G191300 Gossypium hirsutum HOM05D003943 ORTHO05D004753 7.8e-103 377.5 200 91.5
Manes.08G033500 Manihot esculenta HOM05D003943 ORTHO05D004753 7.8e-103 377.5 200 92.0
CiPaw.09G020900 Carya illinoinensis HOM05D003943 ORTHO05D004753 1.3e-102 376.7 200 92.5
Thecc.05G104300 Theobroma cacao HOM05D003943 ORTHO05D004753 1.7e-102 376.3 200 91.5
TWI74G1172 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 1.7e-102 376.3 200 92.0
CARHR207110 Cardamine hirsuta HOM05D003943 ORTHO05D004753 2.3e-102 375.9 200 90.0
Gorai.002G235200 Gossypium raimondii HOM05D003943 ORTHO05D004753 2.3e-102 375.9 200 91.0
arahy.Tifrunner.gnm1.ann1.07MWYB Arachis hypogaea HOM05D003943 ORTHO05D004753 3.9e-102 375.2 200 91.5
arahy.Tifrunner.gnm1.ann1.T05T6P Arachis hypogaea HOM05D003943 ORTHO05D004753 3.9e-102 375.2 200 91.5
COL.COLO4_29575 Corchorus olitorius HOM05D003943 ORTHO05D004753 3.9e-102 375.2 200 93.5
Lalb_Chr11g0067891 Lupinus albus HOM05D003943 ORTHO05D004753 3.9e-102 375.2 200 92.0
Lalb_Chr02g0144091 Lupinus albus HOM05D003943 ORTHO05D004753 5.1e-102 374.8 200 91.5
Ciclev10012509m.g Citrus clementina HOM05D003943 ORTHO05D004753 6.6e-102 374.4 200 92.0
CSS0000599 Camellia sinensis var. sinensis HOM05D003943 ORTHO05D004753 8.7e-102 374.0 200 92.0
Atru.chr12.911 Acer truncatum HOM05D003943 ORTHO05D004753 1.1e-101 373.6 200 92.0
CiPaw.10G017400 Carya illinoinensis HOM05D003943 ORTHO05D004753 1.1e-101 373.6 200 91.5
Atru.chr8.1362 Acer truncatum HOM05D003943 ORTHO05D004753 2.5e-101 372.5 200 91.5
Gohir.A01G201400 Gossypium hirsutum HOM05D003943 ORTHO05D004753 2.5e-101 372.5 200 90.5
Nitab4.5_0008073g0030 Nicotiana tabacum HOM05D003943 ORTHO05D004753 2.5e-101 372.5 200 92.0
Glyma.02G196900 Glycine max HOM05D003943 ORTHO05D004753 3.3e-101 372.1 200 90.5
Glyma.10G002300 Glycine max HOM05D003943 ORTHO05D004753 3.3e-101 372.1 200 90.5
Glyma.10G081400 Glycine max HOM05D003943 ORTHO05D004753 3.3e-101 372.1 200 90.5
VMungo0331G0074 Vigna mungo HOM05D003943 ORTHO05D004753 4.3e-101 371.7 200 90.5
VMungo0720G1310 Vigna mungo HOM05D003943 ORTHO05D004753 4.3e-101 371.7 200 90.5
Nn2g14305 Nelumbo nucifera HOM05D003943 ORTHO05D004753 5.6e-101 371.3 200 92.0
Phvul.010G103000 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 5.6e-101 371.3 200 90.5
unitig_32.g11085 Utricularia gibba HOM05D003943 ORTHO05D004753 5.6e-101 371.3 199 92.0
Sed0023950 Sechium edule HOM05D003943 ORTHO05D004753 7.3e-101 370.9 198 92.4
Ca_16636_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 9.6e-101 370.5 200 90.0
ClCG01G015010 Citrullus lanatus HOM05D003943 ORTHO05D004753 9.6e-101 370.5 200 91.5
Dinv20358 Davidia involucrata HOM05D003943 ORTHO05D004753 9.6e-101 370.5 200 91.0
Oeu049654.1 Olea europaea HOM05D003943 ORTHO05D004753 9.6e-101 370.5 200 90.5
Prupe.4G241300 Prunus persica HOM05D003943 ORTHO05D004753 1.2e-100 370.2 200 90.0
Sopen09g036280 Solanum pennellii HOM05D003943 ORTHO05D004753 1.2e-100 370.2 200 91.5
PGSC0003DMG400021625 Solanum tuberosum HOM05D003943 ORTHO05D004753 1.2e-100 370.2 200 91.5
MELO3C024586.2 Cucumis melo HOM05D003943 ORTHO05D004753 2.1e-100 369.4 200 90.5
Sed0024685 Sechium edule HOM05D003943 ORTHO05D004753 2.1e-100 369.4 198 91.9
Hund10875 Selenicereus undatus HOM05D003943 ORTHO05D004753 2.1e-100 369.4 200 90.5
TAR633G0404 Trochodendron aralioides HOM05D003943 ORTHO05D004753 2.1e-100 369.4 200 90.5
MSTRG.10894 Avicennia marina HOM05D003943 ORTHO05D004753 2.8e-100 369.0 200 90.5
Phvul.007G268100 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 2.8e-100 369.0 200 90.0
PGR004G2105 Punica granatum HOM05D003943 ORTHO05D004753 2.8e-100 369.0 200 91.0
PGR142G4032 Punica granatum HOM05D003943 ORTHO05D004753 2.8e-100 369.0 200 91.0
Oeu039454.1 Olea europaea HOM05D003943 ORTHO05D004753 3.6e-100 368.6 200 90.0
TAR623G0676 Trochodendron aralioides HOM05D003943 ORTHO05D004753 3.6e-100 368.6 198 91.4
CsaV3_6G041100 Cucumis sativus L. HOM05D003943 ORTHO05D004753 4.7e-100 368.2 200 90.0
Psat6g114680 Pisum sativum HOM05D003943 ORTHO05D004753 4.7e-100 368.2 200 89.0
SGA_v2.0_scaffold71G24009 Striga asiatica HOM05D003943 ORTHO05D004753 4.7e-100 368.2 199 90.5
Migut.I01176 Erythranthe guttata HOM05D003943 ORTHO05D004753 6.2e-100 367.9 199 91.0
Haze_03432 Corylus avellana HOM05D003943 ORTHO05D004753 8.1e-100 367.5 200 90.5
Haze_20185 Corylus avellana HOM05D003943 ORTHO05D004753 8.1e-100 367.5 200 90.5
GSVIVG01011153001 Vitis vinifera HOM05D003943 ORTHO05D004753 8.1e-100 367.5 200 91.0
Ca_11700_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 1.1e-99 367.1 200 89.0
Medtr3g088865 Medicago truncatula HOM05D003943 ORTHO05D004753 1.1e-99 367.1 200 88.5
QL07p036748 Quercus lobata HOM05D003943 ORTHO05D004753 1.4e-99 366.7 200 90.5
FvH4_1g24730 Fragaria vesca HOM05D003943 ORTHO05D004753 1.8e-99 366.3 200 89.5
FvH4_1g24810 Fragaria vesca HOM05D003943 ORTHO05D004753 1.8e-99 366.3 200 89.5
FAN19G3070 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.8e-99 366.3 200 89.5
SalBow6G5742 Salvia bowleyana HOM05D003943 ORTHO05D004753 1.8e-99 366.3 199 89.9
TPR.G2813 Trifolium pratense HOM05D003943 ORTHO05D004753 1.8e-99 366.3 200 88.5
TPR.G5876 Trifolium pratense HOM05D003943 ORTHO05D004753 1.8e-99 366.3 200 88.5
Eucgr.K02620 Eucalyptus grandis HOM05D003943 ORTHO05D004753 4.0e-99 365.2 200 90.0
Cpa.g.sc104.32 Carica papaya HOM05D003943 ORTHO05D004753 5.3e-99 364.8 200 89.0
Cfa010504 Carpinus fangiana HOM05D003943 ORTHO05D004753 5.3e-99 364.8 200 89.0
FAN19G1372 Fragaria x ananassa HOM05D003943 ORTHO05D004753 5.3e-99 364.8 200 89.0
Sabra06G0156600 Salix brachista HOM05D003943 ORTHO05D004753 9.0e-99 364.0 224 83.0
HPP92_002146 Vanilla planifolia HOM05D003943 ORTHO05D004753 9.0e-99 364.0 200 89.0
EL10Ac5g12966 Beta vulgaris HOM05D003943 ORTHO05D004753 1.2e-98 363.6 200 90.0
RcHm_v2.0_Chr2g0122251 Rosa chinensis HOM05D003943 ORTHO05D004753 1.2e-98 363.6 200 88.5
RcHm_v2.0_Chr4g0409741 Rosa chinensis HOM05D003943 ORTHO05D004753 1.2e-98 363.6 200 88.5
Ah.12g059190 Amaranthus hybridus HOM05D003943 ORTHO05D004753 1.5e-98 363.2 199 88.9
CANSAT64G2459 Cannabis sativa HOM05D003943 ORTHO05D004753 1.5e-98 363.2 200 88.5
FAN28G2380 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.5e-98 363.2 200 88.5
Lsat_1_v5_gn_4_88760 Lactuca sativa HOM05D003943 ORTHO05D004753 1.5e-98 363.2 200 88.0
Lsat_1_v5_gn_6_32361 Lactuca sativa HOM05D003943 ORTHO05D004753 1.5e-98 363.2 200 88.0
Lj6A21G25 Lonicera japonica HOM05D003943 ORTHO05D004753 1.5e-98 363.2 200 89.0
Lj6A3G40 Lonicera japonica HOM05D003943 ORTHO05D004753 1.5e-98 363.2 200 89.0
PSO339G3654 Papaver somniferum HOM05D003943 ORTHO05D004753 1.5e-98 363.2 200 87.0
PSO384G4082 Papaver somniferum HOM05D003943 ORTHO05D004753 1.5e-98 363.2 200 87.0
Lj1g0010263 Lotus japonicus HOM05D003943 ORTHO05D004753 2.0e-98 362.8 200 86.0
ATR0772G207 Amborella trichopoda HOM05D003943 ORTHO05D004753 2.6e-98 362.5 198 88.9
CDE10G1025 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 4.4e-98 361.7 200 88.5
Actinidia38793 Actinidia chinensis HOM05D003943 ORTHO05D004753 5.8e-98 361.3 200 89.0
HanXRQChr09g0277391 Helianthus annuus HOM05D003943 ORTHO05D004753 5.8e-98 361.3 199 89.4
HanXRQChr17g0533251 Helianthus annuus HOM05D003943 ORTHO05D004753 5.8e-98 361.3 199 89.4
Peaxi162Scf00286g00330 Petunia axillaris HOM05D003943 ORTHO05D004753 5.8e-98 361.3 202 89.6
MD05G1235300 Malus domestica HOM05D003943 ORTHO05D004753 7.6e-98 360.9 200 87.5
Medtr0508s0010 Medicago truncatula HOM05D003943 ORTHO05D004753 7.6e-98 360.9 200 87.5
Cc04_g00390 Coffea canephora HOM05D003943 ORTHO05D004753 1.3e-97 360.1 209 86.1
Actinidia21868 Actinidia chinensis HOM05D003943 ORTHO05D004753 1.7e-97 359.8 200 88.0
MD10G1211300 Malus domestica HOM05D003943 ORTHO05D004753 1.7e-97 359.8 200 87.5
Rhsim08G0248000 Rhododendron simsii HOM05D003943 ORTHO05D004753 1.7e-97 359.8 200 87.5
vmacro18760 Vaccinium macrocarpon HOM05D003943 ORTHO05D004753 1.7e-97 359.8 204 87.3
Aqoxy1G00659 Aquilegia oxysepala HOM05D003943 ORTHO05D004753 6.4e-97 357.8 200 86.5
Hma1.2p1_1104F.1_g257380 Hydrangea macrophylla HOM05D003943 ORTHO05D004753 6.4e-97 357.8 202 87.6
AUR62030745 Chenopodium quinoa HOM05D003943 ORTHO05D004753 4.2e-96 355.1 199 86.9
AUR62036383 Chenopodium quinoa HOM05D003943 ORTHO05D004753 4.2e-96 355.1 199 86.9
Dinv37798 Davidia involucrata HOM05D003943 ORTHO05D004753 1.2e-95 353.6 192 90.6
FAN23G0735 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.6e-95 353.2 195 88.7
ECA233G4676 Erigeron canadensis HOM05D003943 ORTHO05D004753 2.1e-95 352.8 199 86.4
Pp3c7_2280 Physcomitrium patens HOM05D003943 ORTHO05D004753 3.5e-95 352.1 200 85.0
SMO367G0573 Selaginella moellendorffii HOM05D003943 ORTHO05D004753 4.6e-95 351.7 200 84.5
Mapoly0020s0123 Marchantia polymorpha HOM05D003943 ORTHO05D004753 1.0e-94 350.5 200 85.0
Zm00001eb111290 Zea mays HOM05D003943 ORTHO05D004753 5.1e-94 348.2 198 85.4
Zm00001eb330440 Zea mays HOM05D003943 ORTHO05D004753 5.1e-94 348.2 198 85.4
AagrBONN_evm.TU.Sc2ySwM_369.90 Anthoceros agrestis HOM05D003943 ORTHO05D004753 1.5e-93 346.7 200 83.0
unitig_748.g7832 Utricularia gibba HOM05D003943 ORTHO05D004753 2.8e-92 342.4 180 92.8
Os07g0673100 Oryza sativa ssp. japonica HOM05D003943 ORTHO05D004753 4.8e-92 341.7 200 84.5
Lj2g0010046 Lotus japonicus HOM05D003943 ORTHO05D004753 5.8e-90 334.7 200 82.0
CBR_g12036 Chara braunii HOM05D003943 ORTHO05D004753 2.2e-89 332.8 198 79.8
MCO03G138 Micromonas commoda HOM05D003943 ORTHO05D004753 3.8e-89 332.0 198 78.3
DCAR_016668 Daucus carota HOM05D003943 ORTHO05D004753 6.4e-89 331.3 176 90.3
Nitab4.5_0003291g0080 Nicotiana tabacum HOM05D003943 ORTHO05D004753 1.1e-88 330.5 231 76.2
PRCOL_00000915 Prasinoderma coloniale HOM05D003943 ORTHO05D004753 1.1e-88 330.5 198 81.8
Sc14g0006610 Simmondsia chinensis HOM05D003943 ORTHO05D004753 1.1e-88 330.5 182 89.6
DCAR_017903 Daucus carota HOM05D003943 ORTHO05D004753 7.1e-88 327.8 178 88.2
FAN23G1436 Fragaria x ananassa HOM05D003943 ORTHO05D004753 2.7e-87 325.9 176 89.2
FAN26G0481 Fragaria x ananassa HOM05D003943 ORTHO05D004753 2.7e-87 325.9 176 89.2
SEGI_04875 Sequoiadendron giganteum HOM05D003943 ORTHO05D004753 3.9e-86 322.0 174 87.9
Gohir.D09G130700 Gossypium hirsutum HOM05D003943 ORTHO05D004753 2.1e-84 316.2 200 81.0
Cre12.g507300 Chlamydomonas reinhardtii HOM05D003943 ORTHO05D004753 4.8e-84 315.1 200 75.0
AagrBONN_evm.TU.Sc2ySwM_340.394 Anthoceros agrestis HOM05D003943 ORTHO05D004753 2.5e-80 302.8 202 75.2
PGSC0003DMG400029099 Solanum tuberosum HOM05D003943 ORTHO05D004753 3.5e-79 298.9 200 77.5
CAN.G710.48 Capsicum annuum HOM05D003943 ORTHO05D004753 3.1e-75 285.8 250 64.8
Rhsim05G0206200 Rhododendron simsii HOM05D003943 ORTHO05D004753 5.5e-72 275.0 200 72.0
Peaxi162Scf01149g00220 Petunia axillaris HOM05D003943 ORTHO05D004753 2.3e-70 269.6 140 93.6
Haze_27191 Corylus avellana HOM05D003943 ORTHO05D004753 4.3e-69 265.4 197 65.5
Cfa024104 Carpinus fangiana HOM05D003943 ORTHO05D123184 7.4e-61 238.0 198 60.1
TPR.G6300 Trifolium pratense HOM05D003943 ORTHO05D004753 1.2e-55 220.7 219 56.2
SHI12410 Sapria himalayana HOM05D003943 ORTHO05D004753 1.9e-48 196.8 97 94.8
BcaC06g32370 Brassica carinata HOM05D003943 ORTHO05D004753 5.7e-45 185.3 102 93.1
BcaNung06320 Brassica carinata HOM05D003943 ORTHO05D004753 5.7e-45 185.3 102 93.1
CDE10G0220 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 4.8e-44 182.2 92 93.5
Lsat_1_v5_gn_8_162181 Lactuca sativa HOM05D003943 ORTHO05D004753 1.6e-42 177.2 140 67.1
Duzib106G1686 Durio zibethinus HOM05D003943 ORTHO05D004753 3.2e-40 169.5 103 81.6
EL10Ac3g06422 Beta vulgaris HOM05D003943 ORTHO05D004753 5.2e-38 162.2 135 63.7
RcHm_v2.0_Chr7g0216591 Rosa chinensis HOM05D003943 ORTHO05D004753 2.6e-37 159.8 94 83.0
HanXRQChr03g0072971 Helianthus annuus HOM05D003943 ORTHO05D004753 5.7e-37 158.7 92 83.7
CDE10G0110 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 6.3e-36 155.2 95 81.1
SHI12413 Sapria himalayana HOM05D003943 ORTHO05D004753 1.5e-29 134.0 81 85.2
BcaC01g01015 Brassica carinata HOM05D003943 ORTHO05D004753 5.7e-29 132.1 80 86.2
Lsat_1_v5_gn_6_65181 Lactuca sativa HOM05D003943 ORTHO05D000236 9.8e-29 131.3 140 55.0
RcHm_v2.0_Chr7g0216551 Rosa chinensis HOM05D003943 ORTHO05D004753 1.4e-27 127.5 222 41.4
Actinidia21636 Actinidia chinensis HOM05D003943 ORTHO05D004753 1.8e-22 110.5 111 58.6
Lj9C540G13 Lonicera japonica HOM05D003943 ORTHO05D004753 3.0e-22 109.8 176 40.9
RcHm_v2.0_Chr7g0216581 Rosa chinensis HOM05D003943 ORTHO05D004753 2.6e-13 80.1 81 56.8
CAN.G1001.28 Capsicum annuum HOM05D003943 ORTHO05D005733 1.7e-09 67.4 59 61.0
C04p30500 Brassica napus HOM05D002284 ORTHO05D033292 3.3e-08 63.2 34 88.2
BcaC05g26689 Brassica carinata HOM05D003943 ORTHO05D004753 4.3e-08 62.8 38 76.3
BolC4t24585H Brassica oleracea HOM05D002284 ORTHO05D033292 2.8e-07 60.1 34 85.3


User provided reference genes

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