Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG3G4990 Aethionema arabicum HOM05D007252 ORTHO05D009074 3.1e-27 124.4 63 100.0
AT3G11591 Arabidopsis thaliana HOM05D007252 ORTHO05D009074 1.3e-20 102.4 61 83.6
CARHR086150 Cardamine hirsuta HOM05D007252 ORTHO05D009074 2.1e-20 101.7 61 83.6
BcaC09g48182 Brassica carinata HOM05D007252 ORTHO05D009074 6.9e-19 96.7 61 78.7
BolC1t05305H Brassica oleracea HOM05D007252 ORTHO05D009074 6.9e-19 96.7 61 78.7
BcaB04g21127 Brassica carinata HOM05D007252 ORTHO05D009074 2.0e-18 95.1 61 77.0
BNapus_Darmor_BZH_scaffold_145p00090 Brassica napus HOM05D007252 ORTHO05D009074 2.0e-18 95.1 61 77.0
BraA01t04175Z Brassica rapa HOM05D007252 ORTHO05D009074 2.0e-18 95.1 61 77.0
Cpa.g.sc104.83 Carica papaya HOM05D007252 ORTHO05D009074 1.2e-15 85.9 63 68.3
PGR142G0020 Punica granatum HOM05D007252 ORTHO05D009074 6.1e-15 83.6 63 68.3
Potri.006G207600 Populus trichocarpa HOM05D007252 ORTHO05D009074 2.3e-14 81.6 59 67.8
TWI74G0966 Tripterygium wilfordii HOM05D007252 ORTHO05D009074 8.7e-14 79.7 63 63.5
Manes.09G050900 Manihot esculenta HOM05D007252 ORTHO05D009074 1.5e-13 79.0 63 65.1
MD14G1032500 Malus domestica HOM05D007252 ORTHO05D009074 1.9e-13 78.6 62 66.1
Cfa016655 Carpinus fangiana HOM05D007252 ORTHO05D009074 2.5e-13 78.2 61 63.9
COL.COLO4_29654 Corchorus olitorius HOM05D007252 ORTHO05D009074 1.3e-12 75.9 63 61.9
FAN09G1620 Fragaria x ananassa HOM05D007252 ORTHO05D009074 1.6e-12 75.5 62 61.3
CiPaw.10G013800 Carya illinoinensis HOM05D007252 ORTHO05D009074 3.7e-12 74.3 62 61.3
RcHm_v2.0_Chr3g0474991 Rosa chinensis HOM05D007252 ORTHO05D009074 3.7e-12 74.3 62 61.3
Duzib093G1663 Durio zibethinus HOM05D007252 ORTHO05D009074 4.8e-12 73.9 63 60.3
Thecc.05G097600 Theobroma cacao HOM05D007252 ORTHO05D009074 4.8e-12 73.9 63 60.3
Gohir.D11G337600 Gossypium hirsutum HOM05D007252 ORTHO05D009074 1.4e-11 72.4 63 60.3
Gorai.007G367600 Gossypium raimondii HOM05D007252 ORTHO05D009074 1.4e-11 72.4 63 60.3
Prupe.7G100100 Prunus persica HOM05D007252 ORTHO05D009074 6.9e-11 70.1 63 58.7
Sc20g0006500 Simmondsia chinensis HOM05D007252 ORTHO05D009074 6.9e-11 70.1 57 59.6
Gohir.A11G318300 Gossypium hirsutum HOM05D007252 ORTHO05D009074 2.0e-10 68.6 63 57.1
Lalb_Chr21g0315921 Lupinus albus HOM05D007252 ORTHO05D009074 2.0e-10 68.6 63 54.0
Actinidia07909 Actinidia chinensis HOM05D007252 ORTHO05D009074 3.4e-10 67.8 58 60.3
CiPaw.10G013500 Carya illinoinensis HOM05D007252 ORTHO05D009074 5.9e-10 67.0 62 54.8
Gohir.D05G377900 Gossypium hirsutum HOM05D007252 ORTHO05D009074 8.5e-09 63.2 58 56.9
Sabra06G0159800 Salix brachista HOM05D002789 ORTHO05D009074 8.5e-09 63.2 47 63.8
Gorai.009G445700 Gossypium raimondii HOM05D007252 ORTHO05D009074 1.1e-08 62.8 58 56.9
Lj5g0009107 Lotus japonicus HOM05D007252 ORTHO05D009074 1.1e-08 62.8 63 52.4
Gohir.A04G010100 Gossypium hirsutum HOM05D007252 ORTHO05D009074 1.9e-08 62.0 58 56.9
CSS0032760 Camellia sinensis var. sinensis HOM05D007252 ORTHO05D009074 3.2e-08 61.2 53 56.6
Ciclev10010136m.g Citrus clementina HOM05D007252 ORTHO05D009074 3.2e-08 61.2 58 50.0
Migut.L01811 Erythranthe guttata HOM05D007252 ORTHO05D009074 3.2e-08 61.2 63 50.8
Medtr1g058260 Medicago truncatula HOM05D007252 ORTHO05D009074 4.2e-08 60.8 58 50.0
BcaB03g12504 Brassica carinata HOM05D007252 ORTHO05D009074 5.5e-08 60.5 53 52.8
BcaC09g50629 Brassica carinata HOM05D007252 ORTHO05D009074 5.5e-08 60.5 53 52.8
BcaC09g52252 Brassica carinata HOM05D007252 ORTHO05D009074 5.5e-08 60.5 53 52.8
A08p20750 Brassica napus HOM05D007252 ORTHO05D009074 5.5e-08 60.5 53 52.8
C01p22730 Brassica napus HOM05D007252 ORTHO05D009074 5.5e-08 60.5 53 52.8
BolC1t02202H Brassica oleracea HOM05D007252 ORTHO05D009074 5.5e-08 60.5 53 52.8
BraA08t34029Z Brassica rapa HOM05D007252 ORTHO05D009074 5.5e-08 60.5 53 52.8
Cfa020240 Carpinus fangiana HOM05D007252 ORTHO05D009074 5.5e-08 60.5 55 52.7
Nn7g36100 Nelumbo nucifera HOM05D002789 ORTHO05D003185 5.5e-08 60.5 53 54.7
Aa31LG5G12260 Aethionema arabicum HOM05D007252 ORTHO05D009074 7.2e-08 60.1 53 52.8
CSS0018987 Camellia sinensis var. sinensis HOM05D007252 ORTHO05D009074 7.2e-08 60.1 53 56.6
Manes.03G134300 Manihot esculenta HOM05D007252 ORTHO05D009074 7.2e-08 60.1 55 54.5
AL7G26180 Arabidopsis lyrata HOM05D007252 ORTHO05D009074 1.2e-07 59.3 53 52.8
A01p17930 Brassica napus HOM05D007252 ORTHO05D009074 1.6e-07 58.9 53 52.8
BraA01t01748Z Brassica rapa HOM05D007252 ORTHO05D009074 1.6e-07 58.9 53 52.8
Carub.0007s1418 Capsella rubella HOM05D007252 ORTHO05D009074 2.1e-07 58.5 53 50.9
QL08p064685 Quercus lobata HOM05D007252 ORTHO05D009074 2.1e-07 58.5 55 50.9
BcaC07g38242 Brassica carinata HOM05D007252 ORTHO05D009074 3.6e-07 57.8 53 50.9
C08p09910 Brassica napus HOM05D007252 ORTHO05D009074 3.6e-07 57.8 53 50.9
BolC8t48668H Brassica oleracea HOM05D007252 ORTHO05D009074 3.6e-07 57.8 53 50.9
COL.COLO4_09763 Corchorus olitorius HOM05D007252 ORTHO05D009074 4.6e-07 57.4 55 52.7
Sc07g0002910 Simmondsia chinensis HOM05D007252 ORTHO05D009074 4.6e-07 57.4 55 47.3
Glyma.02G200400 Glycine max HOM05D007252 ORTHO05D009074 1.4e-06 55.8 62 43.5
Sed0008758 Sechium edule HOM05D007252 ORTHO05D009074 1.4e-06 55.8 52 53.8
Lsat_1_v5_gn_0_15441 Lactuca sativa HOM05D007252 ORTHO05D009074 1.8e-06 55.5 55 49.1
DCAR_020730 Daucus carota HOM05D006095 ORTHO05D001225 2.3e-06 55.1 48 56.2
Thecc.07G024200 Theobroma cacao HOM05D007252 ORTHO05D009074 2.3e-06 55.1 55 50.9
AUR62015933 Chenopodium quinoa HOM05D007252 ORTHO05D009074 3.0e-06 54.7 55 49.1
Phvul.007G231000 Phaseolus vulgaris HOM05D007252 ORTHO05D009074 3.0e-06 54.7 58 46.6
Sabra08G0007100 Salix brachista HOM05D000045 ORTHO05D000067 3.0e-06 54.7 55 45.5
CAN.G337.42 Capsicum annuum HOM05D007252 ORTHO05D009074 5.1e-06 53.9 57 47.4
CARHR234280 Cardamine hirsuta HOM05D007252 ORTHO05D009074 5.1e-06 53.9 53 47.2
EL10Ac4g07630 Beta vulgaris HOM05D007252 ORTHO05D009074 6.7e-06 53.5 53 49.1
AUR62040676 Chenopodium quinoa HOM05D007252 ORTHO05D009074 6.7e-06 53.5 55 47.3
HanXRQChr03g0076961 Helianthus annuus HOM05D007252 ORTHO05D009074 6.7e-06 53.5 55 43.6
ECA240G2584 Erigeron canadensis HOM05D007252 ORTHO05D009074 8.8e-06 53.1 55 47.3


User provided reference genes

Program Settings