Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG3G4830 Aethionema arabicum HOM05D005118 ORTHO05D006038 1.9e-220 768.8 383 100.0
Aa31LG3G4790 Aethionema arabicum HOM05D005118 ORTHO05D006038 2.6e-129 466.1 270 85.9
AL3G23010 Arabidopsis lyrata HOM05D005118 ORTHO05D006038 1.2e-118 430.6 272 79.0
Sp3g09700 Schrenkiella parvula HOM05D005118 ORTHO05D006038 3.0e-117 426.0 272 76.5
CARHR145210 Cardamine hirsuta HOM05D005118 ORTHO05D006038 8.8e-117 424.5 272 78.3
Carub.0005s0168 Capsella rubella HOM05D005118 ORTHO05D006038 4.4e-116 422.2 272 76.5
A05p37870 Brassica napus HOM05D005118 ORTHO05D006038 2.4e-114 416.4 268 75.0
BraA05t22581Z Brassica rapa HOM05D005118 ORTHO05D006038 1.0e-112 411.0 266 75.6
C05p56660 Brassica napus HOM05D005118 ORTHO05D006038 3.8e-112 409.1 268 75.0
BolC5t34331H Brassica oleracea HOM05D005118 ORTHO05D006038 3.8e-112 409.1 268 75.0
BcaB06g25621 Brassica carinata HOM05D005118 ORTHO05D006038 1.1e-111 407.5 263 76.8
AT3G11470 Arabidopsis thaliana HOM05D005118 ORTHO05D006038 3.0e-109 399.4 247 78.1
Thhalv10018973m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 6.3e-107 391.7 262 74.4
BcaC05g29371 Brassica carinata HOM05D005118 ORTHO05D006038 1.3e-104 384.0 257 74.3
THA.LOC104816589 Tarenaya hassleriana HOM05D005118 ORTHO05D006038 7.3e-95 351.7 248 68.5
Thhalv10021266m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 6.8e-93 345.1 274 68.2
COL.COLO4_29702 Corchorus olitorius HOM05D005118 ORTHO05D006038 1.2e-92 344.4 273 60.4
Sp3g13570 Schrenkiella parvula HOM05D005118 ORTHO05D006038 1.5e-92 344.0 270 68.1
Gorai.002G239100 Gossypium raimondii HOM05D005118 ORTHO05D006038 4.1e-90 335.9 275 58.9
GSVIVG01016776001 Vitis vinifera HOM05D005118 ORTHO05D006038 9.2e-90 334.7 275 60.0
Gohir.D01G195000 Gossypium hirsutum HOM05D005118 ORTHO05D006038 1.2e-89 334.3 275 58.5
Psat6g079520 Pisum sativum HOM05D005118 ORTHO05D006038 1.2e-89 334.3 275 59.3
Gohir.A01G205500 Gossypium hirsutum HOM05D005118 ORTHO05D006038 2.7e-89 333.2 275 58.2
Lalb_Chr10g0096391 Lupinus albus HOM05D005118 ORTHO05D006038 2.3e-88 330.1 275 57.5
Ciclev10011946m.g Citrus clementina HOM05D005118 ORTHO05D006038 5.0e-88 328.9 298 55.4
Medtr8g095460 Medicago truncatula HOM05D005118 ORTHO05D006038 6.6e-88 328.6 276 58.0
TPR.G2549 Trifolium pratense HOM05D005118 ORTHO05D006038 1.1e-87 327.8 274 57.7
Thecc.05G091100 Theobroma cacao HOM05D005118 ORTHO05D006038 2.5e-87 326.6 274 59.1
Migut.J01020 Erythranthe guttata HOM05D005118 ORTHO05D006038 3.3e-87 326.2 265 59.6
CiPaw.09G015400 Carya illinoinensis HOM05D005118 ORTHO05D006038 7.3e-87 325.1 273 59.0
Medtr1g059790 Medicago truncatula HOM05D005118 ORTHO05D006038 9.5e-87 324.7 274 57.7
Prupe.7G104300 Prunus persica HOM05D005118 ORTHO05D006038 2.8e-86 323.2 274 59.9
Atru.chr8.1478 Acer truncatum HOM05D005118 ORTHO05D006038 6.2e-86 322.0 271 60.5
AT2G02765 Arabidopsis thaliana HOM05D005118 ORTHO05D006038 8.0e-86 321.6 202 76.7
Sabra06G0162900 Salix brachista HOM05D005118 ORTHO05D006038 1.0e-85 321.2 275 58.5
Atru.chr8.1769 Acer truncatum HOM05D005118 ORTHO05D006038 1.8e-85 320.5 276 59.1
QL05p009399 Quercus lobata HOM05D005118 ORTHO05D006038 1.8e-85 320.5 289 54.7
CsaV3_6G003860 Cucumis sativus L. HOM05D005118 ORTHO05D006038 4.0e-85 319.3 272 58.1
Eucgr.A02654 Eucalyptus grandis HOM05D005118 ORTHO05D006038 4.0e-85 319.3 273 58.6
TAR365G0960 Trochodendron aralioides HOM05D005118 ORTHO05D006038 4.0e-85 319.3 275 58.5
Rhsim03G0072700 Rhododendron simsii HOM05D005118 ORTHO05D006038 5.2e-85 318.9 274 58.8
arahy.Tifrunner.gnm1.ann1.72V09J Arachis hypogaea HOM05D005118 ORTHO05D006038 6.8e-85 318.5 274 55.5
arahy.Tifrunner.gnm1.ann1.W1QNQS Arachis hypogaea HOM05D005118 ORTHO05D006038 6.8e-85 318.5 274 55.5
Lj5g0005733 Lotus japonicus HOM05D005118 ORTHO05D006038 1.5e-84 317.4 276 56.5
BolC5t33871H Brassica oleracea HOM05D005118 ORTHO05D006038 2.0e-84 317.0 277 61.7
HanXRQChr08g0212801 Helianthus annuus HOM05D005118 ORTHO05D006038 2.0e-84 317.0 261 60.2
Ca_00895_v3 Cicer arietinum L. HOM05D005118 ORTHO05D006038 3.4e-84 316.2 275 55.3
Aqoxy3G03420 Aquilegia oxysepala HOM05D005118 ORTHO05D006038 7.5e-84 315.1 278 56.5
MELO3C011647.2 Cucumis melo HOM05D005118 ORTHO05D006038 9.8e-84 314.7 272 58.1
Glyma.13G154600 Glycine max HOM05D005118 ORTHO05D006038 9.8e-84 314.7 278 55.8
VMungo1309G0892 Vigna mungo HOM05D005118 ORTHO05D006038 1.7e-83 313.9 275 55.3
CSS0000835 Camellia sinensis var. sinensis HOM05D005118 ORTHO05D006038 2.2e-83 313.5 275 56.0
Oeu056875.2 Olea europaea HOM05D005118 ORTHO05D006038 2.2e-83 313.5 272 57.4
TWI77G0553 Tripterygium wilfordii HOM05D005118 ORTHO05D006038 3.7e-83 312.8 279 56.3
SalBow3G3316 Salvia bowleyana HOM05D005118 ORTHO05D006038 4.9e-83 312.4 274 56.9
Lsat_1_v5_gn_9_20681 Lactuca sativa HOM05D005118 ORTHO05D006038 6.4e-83 312.0 279 56.3
Nitab4.5_0001933g0040 Nicotiana tabacum HOM05D005118 ORTHO05D006038 6.4e-83 312.0 286 55.2
vmacro07419 Vaccinium macrocarpon HOM05D005118 ORTHO05D006038 8.3e-83 311.6 314 51.3
RcHm_v2.0_Chr3g0474251 Rosa chinensis HOM05D005118 ORTHO05D006038 1.9e-82 310.5 272 59.2
ECA247G3083 Erigeron canadensis HOM05D005118 ORTHO05D006038 3.2e-82 309.7 277 54.9
FAN02G2546 Fragaria x ananassa HOM05D005118 ORTHO05D006038 4.1e-82 309.3 272 57.4
CANSAT64G1535 Cannabis sativa HOM05D005118 ORTHO05D006038 7.0e-82 308.5 273 57.5
MD12G1027200 Malus domestica HOM05D005118 ORTHO05D006038 7.0e-82 308.5 275 58.2
Phvul.007G152100 Phaseolus vulgaris HOM05D005118 ORTHO05D006038 7.0e-82 308.5 264 56.8
FAN09G1525 Fragaria x ananassa HOM05D005118 ORTHO05D006038 9.2e-82 308.1 272 57.4
Sopen09g004710 Solanum pennellii HOM05D005118 ORTHO05D006038 1.2e-81 307.8 276 55.1
TWI53G1403 Tripterygium wilfordii HOM05D005118 ORTHO05D006038 1.6e-81 307.4 274 56.9
FvH4_6g19140 Fragaria vesca HOM05D005118 ORTHO05D006038 2.0e-81 307.0 270 57.8
FAN14G1754 Fragaria x ananassa HOM05D005118 ORTHO05D006038 2.0e-81 307.0 270 57.8
FAN05G3536 Fragaria x ananassa HOM05D005118 ORTHO05D006038 2.7e-81 306.6 272 57.0
EL10Ac7g16902 Beta vulgaris HOM05D001354 ORTHO05D007486 4.6e-81 305.8 270 57.0
ClCG08G004490 Citrullus lanatus HOM05D005118 ORTHO05D006038 4.6e-81 305.8 274 56.9
Solyc09g009960.3 Solanum lycopersicum HOM05D005118 ORTHO05D006038 4.6e-81 305.8 276 55.1
DCAR_013399 Daucus carota HOM05D005118 ORTHO05D006038 6.0e-81 305.4 282 56.0
AUR62006198 Chenopodium quinoa HOM05D005118 ORTHO05D006038 1.3e-80 304.3 266 56.8
MBI14_g17373_MAGBIO Magnolia biondii HOM05D005118 ORTHO05D006038 3.9e-80 302.8 273 53.1
Nn2g14484 Nelumbo nucifera HOM05D005118 ORTHO05D006038 6.6e-80 302.0 275 54.2
Peaxi162Scf00102g00213 Petunia axillaris HOM05D005118 ORTHO05D006038 2.5e-79 300.1 279 54.1
CAN.G397.66 Capsicum annuum HOM05D005118 ORTHO05D006038 2.1e-78 297.0 276 53.6
Sc02g0000340 Simmondsia chinensis HOM05D005118 ORTHO05D006038 3.6e-78 296.2 273 54.2
PSO782G2273 Papaver somniferum HOM05D005118 ORTHO05D006038 4.7e-78 295.8 275 54.5
Sed0011362 Sechium edule HOM05D005118 ORTHO05D006038 6.2e-78 295.4 275 54.5
PSO063G5626 Papaver somniferum HOM05D005118 ORTHO05D006038 1.8e-77 293.9 275 54.2
Lj6g0000791 Lotus japonicus HOM05D005118 ORTHO05D006038 2.0e-76 290.4 276 53.6
Lj6g0018590 Lotus japonicus HOM05D005118 ORTHO05D006038 2.0e-76 290.4 276 53.6
AL5G11970 Arabidopsis lyrata HOM05D005118 ORTHO05D006038 3.4e-76 289.7 204 69.1
C05p51840 Brassica napus HOM05D005118 ORTHO05D006038 4.4e-76 289.3 276 58.3
Oeu017686.1 Olea europaea HOM05D005118 ORTHO05D006038 5.8e-76 288.9 276 54.3
AUR62037021 Chenopodium quinoa HOM05D005118 ORTHO05D006038 9.8e-76 288.1 243 58.8
Rhsim03G0074200 Rhododendron simsii HOM05D005118 ORTHO05D006038 1.7e-75 287.3 264 55.3
unitig_748.g8118 Utricularia gibba HOM05D005118 ORTHO05D006038 1.3e-72 277.7 272 50.0
Sabra16G0082800 Salix brachista HOM05D005118 ORTHO05D006038 5.1e-72 275.8 320 46.9
Zm00001eb000710 Zea mays HOM05D005118 ORTHO05D006038 1.5e-71 274.2 270 50.7
Dinv21195 Davidia involucrata HOM05D005118 ORTHO05D006038 5.6e-71 272.3 233 57.9
Lj6g0005905 Lotus japonicus HOM05D005118 ORTHO05D006038 2.8e-70 270.0 256 53.9
Potri.006G211300 Populus trichocarpa HOM05D005118 ORTHO05D006038 2.8e-70 270.0 193 67.9
BcaB06g29561 Brassica carinata HOM05D005118 ORTHO05D006038 3.1e-69 266.5 277 54.2
Os08g0243100 Oryza sativa ssp. japonica HOM05D005118 ORTHO05D006038 3.1e-69 266.5 273 48.7
ATR0618G287 Amborella trichopoda HOM05D005118 ORTHO05D006038 4.0e-69 266.2 262 50.8
Peaxi162Scf00096g00416 Petunia axillaris HOM05D005118 ORTHO05D006038 8.9e-69 265.0 263 51.3
HPP92_018124 Vanilla planifolia HOM05D005118 ORTHO05D006038 3.4e-68 263.1 268 51.5
PGR004G0063 Punica granatum HOM05D005118 ORTHO05D006038 7.6e-68 261.9 272 50.4
BraA05t22230Z Brassica rapa HOM05D005118 ORTHO05D006038 9.9e-68 261.5 187 69.5
AUR62017509 Chenopodium quinoa HOM05D005118 ORTHO05D006038 6.4e-67 258.8 262 51.1
Duzib093G2169 Durio zibethinus HOM05D005118 ORTHO05D006038 5.4e-66 255.8 214 57.5
Nitab4.5_0012129g0010 Nicotiana tabacum HOM05D005118 ORTHO05D006038 5.1e-64 249.2 275 48.7
Rhsim03G0072000 Rhododendron simsii HOM05D005118 ORTHO05D006038 4.3e-63 246.1 220 55.9
Hund01804 Selenicereus undatus HOM05D005118 ORTHO05D006038 1.6e-62 244.2 269 48.7
Ah.08g210500 Amaranthus hybridus HOM05D000892 ORTHO05D009371 4.7e-62 242.7 270 48.1
Cc06_g05990 Coffea canephora HOM05D005118 ORTHO05D006038 2.6e-60 236.9 211 56.4
SGA_v2.0_scaffold31G12903 Striga asiatica HOM05D005118 ORTHO05D006038 4.9e-59 232.6 216 53.2
Lj2C139G10 Lonicera japonica HOM05D005118 ORTHO05D006038 1.1e-58 231.5 213 54.0
SEGI_18237 Sequoiadendron giganteum HOM05D005118 ORTHO05D006038 4.2e-58 229.6 292 42.5
Haze_12101 Corylus avellana HOM05D005118 ORTHO05D006038 2.1e-57 227.3 270 44.1
Manes.08G026600 Manihot esculenta HOM05D005118 ORTHO05D006038 3.0e-56 223.4 275 45.5
Dinv21192 Davidia involucrata HOM05D005118 ORTHO05D006038 1.6e-54 217.6 223 53.8
BcaC05g28982 Brassica carinata HOM05D005118 ORTHO05D006038 1.9e-50 204.1 265 48.3
Mapoly0006s0252 Marchantia polymorpha HOM05D005118 ORTHO05D006038 1.6e-49 201.1 288 41.0
HPP92_018147 Vanilla planifolia HOM05D005118 ORTHO05D006038 9.6e-47 191.8 203 49.8
AagrBONN_evm.TU.Sc2ySwM_340.158 Anthoceros agrestis HOM05D005118 ORTHO05D006038 1.6e-46 191.0 297 39.4
Pp3c5_18920 Physcomitrium patens HOM05D005118 ORTHO05D006038 2.1e-46 190.7 296 37.8
SMO144G0078 Selaginella moellendorffii HOM05D005118 ORTHO05D006038 3.1e-45 186.8 276 39.5
Potri.016G078400 Populus trichocarpa HOM05D005118 ORTHO05D006038 4.0e-45 186.4 171 55.6
SMO118G0036 Selaginella moellendorffii HOM05D005118 ORTHO05D006038 3.4e-44 183.3 280 40.7
Cpa.g.sc5.3 Carica papaya HOM05D005118 ORTHO05D006038 1.8e-40 171.0 162 56.8
VMungo0720G0644 Vigna mungo HOM05D005118 ORTHO05D006038 2.8e-38 163.7 118 61.9
VMungo0720G2492 Vigna mungo HOM05D005118 ORTHO05D006038 2.8e-38 163.7 166 49.4
Sabra06G0126100 Salix brachista HOM05D005118 ORTHO05D006038 1.8e-37 161.0 187 48.1
PGSC0003DMG402008870 Solanum tuberosum HOM05D005118 ORTHO05D006038 1.0e-35 155.2 119 61.3
CARHR086010 Cardamine hirsuta HOM05D005118 ORTHO05D006038 1.9e-31 141.0 107 68.2
MD14G1027400 Malus domestica HOM05D005118 ORTHO05D006038 9.6e-31 138.7 140 51.4
A05p34090 Brassica napus HOM05D005118 ORTHO05D006038 1.3e-30 138.3 163 47.2
Carub.0003s1079 Capsella rubella HOM05D005118 ORTHO05D006038 2.1e-30 137.5 99 70.7
FvH4_4g11630 Fragaria vesca HOM05D005118 ORTHO05D006038 5.3e-29 132.9 137 51.1
FAN12G1659 Fragaria x ananassa HOM05D005118 ORTHO05D006038 5.9e-28 129.4 107 59.8
Glyma.10G074300 Glycine max HOM05D005118 ORTHO05D006038 1.8e-24 117.9 118 47.5
PRCOL_00003909 Prasinoderma coloniale HOM05D005118 ORTHO05D006038 1.9e-23 114.4 242 32.6
TPR.G14778 Trifolium pratense HOM05D005118 ORTHO05D006038 1.0e-19 102.1 157 37.6
BcaB06g25617 Brassica carinata HOM05D005118 ORTHO05D006038 4.2e-18 96.7 60 78.3
BcaB06g25618 Brassica carinata HOM05D005118 ORTHO05D006038 4.2e-18 96.7 60 78.3
MCO02G431 Micromonas commoda HOM05D005118 ORTHO05D006038 5.1e-16 89.7 339 24.5
SEGI_32763 Sequoiadendron giganteum HOM05D005118 ORTHO05D006038 7.4e-15 85.9 83 49.4
AUR62015050 Chenopodium quinoa HOM05D005118 ORTHO05D006038 6.3e-14 82.8 58 67.2
CDE02G4411 Ceratophyllum demersum HOM05D000588 ORTHO05D000637 1.5e-12 78.2 106 43.4
Hund15021 Selenicereus undatus HOM05D005118 ORTHO05D006038 2.6e-12 77.4 71 50.7
Ah.16g107780 Amaranthus hybridus HOM05D005118 ORTHO05D006038 4.5e-12 76.6 64 60.9
CBR_g30340 Chara braunii HOM05D005118 ORTHO05D006038 4.5e-12 76.6 201 29.9
Cre01.g018500 Chlamydomonas reinhardtii HOM05D005118 ORTHO05D006038 5.5e-10 69.7 188 30.3
SMO172G0015 Selaginella moellendorffii HOM05D007318 ORTHO05D009289 1.0e-08 65.5 191 28.8
Eucgr.J00256 Eucalyptus grandis HOM05D007318 ORTHO05D009289 5.2e-08 63.2 210 24.8
arahy.Tifrunner.gnm1.ann1.CJJ3HV Arachis hypogaea HOM05D007318 ORTHO05D009289 1.1e-07 62.0 222 26.1
arahy.Tifrunner.gnm1.ann1.CYVU5X Arachis hypogaea HOM05D007318 ORTHO05D009289 1.1e-07 62.0 222 26.1
PGR044G0176 Punica granatum HOM05D007318 ORTHO05D009289 1.1e-07 62.0 209 26.3
Cc02_g09660 Coffea canephora HOM05D007318 ORTHO05D009289 2.0e-07 61.2 197 25.4
arahy.Tifrunner.gnm1.ann1.PPG341 Arachis hypogaea HOM05D007318 ORTHO05D009289 2.6e-07 60.8 222 25.7
Os11g0136500 Oryza sativa ssp. japonica HOM05D007318 ORTHO05D009289 2.6e-07 60.8 210 23.8
QL04p044887 Quercus lobata HOM05D007318 ORTHO05D009289 3.3e-07 60.5 164 27.4
Cpa.g.sc5.264 Carica papaya HOM05D007318 ORTHO05D009289 5.7e-07 59.7 161 27.3
Glyma.15G117500 Glycine max HOM05D007318 ORTHO05D009289 5.7e-07 59.7 164 26.8
Nitab4.5_0001437g0020 Nicotiana tabacum HOM05D007318 ORTHO05D009289 7.4e-07 59.3 193 26.4
ATR1096G030 Amborella trichopoda HOM05D007318 ORTHO05D009289 9.7e-07 58.9 193 25.9
Pp3c5_16220 Physcomitrium patens HOM05D007318 ORTHO05D009289 9.7e-07 58.9 216 25.0
Sopen11g002850 Solanum pennellii HOM05D007318 ORTHO05D009289 9.7e-07 58.9 243 25.9
CiPaw.14G032900 Carya illinoinensis HOM05D007318 ORTHO05D009289 1.3e-06 58.5 159 27.7
Lalb_Chr01g0010421 Lupinus albus HOM05D007318 ORTHO05D009289 1.7e-06 58.2 210 24.8
COL.COLO4_33011 Corchorus olitorius HOM05D007318 ORTHO05D009289 2.2e-06 57.8 141 27.0
RcHm_v2.0_Chr1g0332361 Rosa chinensis HOM05D007318 ORTHO05D009289 2.2e-06 57.8 228 21.5
Ca_20265_v3 Cicer arietinum L. HOM05D007318 ORTHO05D009289 2.8e-06 57.4 176 30.7
Sed0005914 Sechium edule HOM05D007318 ORTHO05D009289 2.8e-06 57.4 210 24.3
GSVIVG01001002001 Vitis vinifera HOM05D007318 ORTHO05D009289 2.8e-06 57.4 161 27.3
CAN.G645.12 Capsicum annuum HOM05D007318 ORTHO05D009289 3.7e-06 57.0 194 27.8
FvH4_7g05530 Fragaria vesca HOM05D007318 ORTHO05D009289 4.8e-06 56.6 211 23.2
Lj6g0015884 Lotus japonicus HOM05D007318 ORTHO05D009289 4.8e-06 56.6 213 25.8
SalBow6G3105 Salvia bowleyana HOM05D007318 ORTHO05D009289 4.8e-06 56.6 228 24.6
Nitab4.5_0011538g0040 Nicotiana tabacum HOM05D007318 ORTHO05D009289 6.3e-06 56.2 192 27.1
Phvul.007G242433 Phaseolus vulgaris HOM05D007318 ORTHO05D009289 6.3e-06 56.2 164 27.4
Haze_02511 Corylus avellana HOM05D007318 ORTHO05D009289 8.2e-06 55.8 167 26.9
Peaxi162Scf00173g00322 Petunia axillaris HOM05D007318 ORTHO05D009289 8.2e-06 55.8 192 27.1


User provided reference genes

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