Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG3G4550 Aethionema arabicum HOM05D004604 ORTHO05D005744 0.0e+00 1258.0 636 100.0
Carub.0003s1055 Capsella rubella HOM05D004604 ORTHO05D005744 2.9e-221 772.3 666 64.3
AL3G22760 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 3.0e-218 762.3 662 63.7
Sp3g09520 Schrenkiella parvula HOM05D004604 ORTHO05D005744 2.2e-213 746.1 666 62.2
BcaC05g29392 Brassica carinata HOM05D004604 ORTHO05D005744 1.5e-206 723.4 642 62.0
C05p56850 Brassica napus HOM05D004604 ORTHO05D005744 1.5e-206 723.4 642 62.0
BolC5t34349H Brassica oleracea HOM05D004604 ORTHO05D005744 4.4e-206 721.8 642 61.8
CARHR085800 Cardamine hirsuta HOM05D004604 ORTHO05D005744 6.0e-203 711.4 656 60.7
A05p38060 Brassica napus HOM05D004604 ORTHO05D005744 2.3e-202 709.5 643 61.0
BraA05t22598Z Brassica rapa HOM05D004604 ORTHO05D005744 2.3e-202 709.5 643 61.0
BcaB06g25636 Brassica carinata HOM05D004604 ORTHO05D005744 4.3e-201 705.3 646 60.8
THA.LOC104816553 Tarenaya hassleriana HOM05D004604 ORTHO05D005744 6.8e-199 698.0 690 56.7
Sp6g37190 Schrenkiella parvula HOM05D004604 ORTHO05D005744 1.7e-197 693.3 693 55.7
Aa31LG11G6730 Aethionema arabicum HOM05D004604 ORTHO05D005744 1.7e-194 683.3 678 56.6
BraA10t45107Z Brassica rapa HOM05D004604 ORTHO05D005744 4.4e-190 668.7 682 55.7
C09p71140 Brassica napus HOM05D004604 ORTHO05D005744 6.0e-187 658.3 667 55.0
AL6G15600 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 1.3e-186 657.1 681 55.4
AT5G05700 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 1.1e-185 654.1 691 54.7
A10p30660 Brassica napus HOM05D004604 ORTHO05D005744 5.6e-185 651.7 668 55.2
BolC9t59876H Brassica oleracea HOM05D004604 ORTHO05D005744 4.8e-184 648.7 665 54.4
BcaC06g32278 Brassica carinata HOM05D004604 ORTHO05D005744 9.9e-182 641.0 662 54.5
CARHR207580 Cardamine hirsuta HOM05D004604 ORTHO05D005744 1.9e-180 636.7 642 55.3
Carub.0006s0459 Capsella rubella HOM05D004604 ORTHO05D005744 7.6e-166 588.2 624 54.5
Manes.10G013900 Manihot esculenta HOM05D004604 ORTHO05D005744 1.9e-161 573.5 687 47.5
FAN01G3126 Fragaria x ananassa HOM05D004604 ORTHO05D005744 4.5e-158 562.4 705 48.4
arahy.Tifrunner.gnm1.ann1.E2DHW8 Arachis hypogaea HOM05D004604 ORTHO05D005744 7.7e-158 561.6 649 50.1
Ciclev10030943m.g Citrus clementina HOM05D004604 ORTHO05D005744 2.9e-157 559.7 670 48.5
RcHm_v2.0_Chr1g0369991 Rosa chinensis HOM05D004604 ORTHO05D005744 1.6e-155 553.9 667 49.2
FAN10G0865 Fragaria x ananassa HOM05D004604 ORTHO05D005744 2.1e-155 553.5 681 48.6
Lj1C953T18 Lonicera japonica HOM05D004604 ORTHO05D005744 1.0e-154 551.2 688 47.8
Gorai.011G285800 Gossypium raimondii HOM05D004604 ORTHO05D005744 5.1e-154 548.9 688 47.5
Gohir.A10G235000 Gossypium hirsutum HOM05D004604 ORTHO05D005744 2.0e-153 547.0 690 47.4
Potri.010G190100 Populus trichocarpa HOM05D004604 ORTHO05D005744 7.4e-153 545.0 673 46.7
CSS0014761 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 9.7e-153 544.7 691 45.9
Lj6g0016498 Lotus japonicus HOM05D004604 ORTHO05D005744 1.7e-152 543.9 669 47.8
Lalb_Chr18g0052631 Lupinus albus HOM05D004604 ORTHO05D005744 2.2e-152 543.5 658 48.2
Prupe.2G248700 Prunus persica HOM05D004604 ORTHO05D005744 2.8e-152 543.1 697 46.9
FvH4_7g24330 Fragaria vesca HOM05D004604 ORTHO05D005744 3.7e-152 542.7 673 47.5
MD07G1220300 Malus domestica HOM05D004604 ORTHO05D005744 1.8e-151 540.4 690 46.8
Glyma.18G028600 Glycine max HOM05D004604 ORTHO05D005744 5.3e-151 538.9 663 48.9
MD01G1132500 Malus domestica HOM05D004604 ORTHO05D005744 6.9e-151 538.5 689 46.7
Thecc.10G020600 Theobroma cacao HOM05D004604 ORTHO05D005744 6.9e-151 538.5 687 47.6
Rhsim03G0142100 Rhododendron simsii HOM05D004604 ORTHO05D005744 2.0e-150 537.0 676 47.0
ECA238G1235 Erigeron canadensis HOM05D004604 ORTHO05D005744 5.9e-150 535.4 636 48.1
TAR623G0226 Trochodendron aralioides HOM05D004604 ORTHO05D005744 7.7e-150 535.0 701 47.5
Hund13846 Selenicereus undatus HOM05D004604 ORTHO05D005744 1.0e-149 534.6 689 46.9
TWI09G1217 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 1.0e-149 534.6 669 46.8
FAN06G3796 Fragaria x ananassa HOM05D004604 ORTHO05D005744 1.3e-149 534.3 613 50.1
Medtr3g070310 Medicago truncatula HOM05D004604 ORTHO05D005744 1.7e-149 533.9 685 46.9
PGR044G2346 Punica granatum HOM05D004604 ORTHO05D005744 1.7e-149 533.9 708 45.6
CiPaw.02G191600 Carya illinoinensis HOM05D004604 ORTHO05D005744 2.9e-149 533.1 661 47.4
Sabra10G0146600 Salix brachista HOM05D004604 ORTHO05D005744 2.9e-149 533.1 663 45.9
AT3G11240 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 6.5e-149 531.9 473 62.6
Psat5g126400 Pisum sativum HOM05D004604 ORTHO05D005744 1.4e-148 530.8 689 46.2
Ca_15268_v3 Cicer arietinum L. HOM05D004604 ORTHO05D005744 2.5e-148 530.0 691 46.5
TPR.G2507 Trifolium pratense HOM05D004604 ORTHO05D005744 5.5e-148 528.9 662 48.2
Lalb_Chr15g0084181 Lupinus albus HOM05D004604 ORTHO05D005744 9.4e-148 528.1 662 47.3
Cpa.g.sc19.189 Carica papaya HOM05D004604 ORTHO05D005744 2.1e-147 526.9 690 45.7
Hma1.2p1_0446F.1_g154570 Hydrangea macrophylla HOM05D004604 ORTHO05D005744 3.6e-147 526.2 693 45.2
Nn2g11459 Nelumbo nucifera HOM05D004604 ORTHO05D005744 4.7e-147 525.8 674 46.3
Phvul.001G241900 Phaseolus vulgaris HOM05D004604 ORTHO05D005744 1.4e-146 524.2 641 47.6
CSS0028164 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 1.8e-146 523.9 691 46.7
Cfa001330 Carpinus fangiana HOM05D004604 ORTHO05D005744 2.3e-146 523.5 683 45.4
Dinv34395 Davidia involucrata HOM05D004604 ORTHO05D005744 3.9e-146 522.7 550 52.2
VMungo1383G0266 Vigna mungo HOM05D004604 ORTHO05D005744 5.2e-146 522.3 643 48.1
Glyma.11G228500 Glycine max HOM05D004604 ORTHO05D005744 6.7e-146 521.9 684 46.9
ClCG11G006230 Citrullus lanatus HOM05D004604 ORTHO05D005744 8.8e-146 521.5 694 44.2
CANSAT35G0855 Cannabis sativa HOM05D004604 ORTHO05D005744 1.1e-145 521.2 678 45.7
HanXRQChr14g0459851 Helianthus annuus HOM05D004604 ORTHO05D005744 1.7e-144 517.3 658 47.0
TWI73G0703 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 2.2e-144 516.9 703 44.8
Ah.16g103410 Amaranthus hybridus HOM05D004604 ORTHO05D005744 1.1e-143 514.6 686 45.3
Atru.chr12.19 Acer truncatum HOM05D004604 ORTHO05D005744 1.8e-143 513.8 694 46.7
Sopen06g017720 Solanum pennellii HOM05D004604 ORTHO05D005744 1.6e-142 510.8 676 45.9
Eucgr.J00226 Eucalyptus grandis HOM05D004604 ORTHO05D005744 2.0e-142 510.4 671 47.2
Aqoxy4G02603 Aquilegia oxysepala HOM05D004604 ORTHO05D005744 4.5e-142 509.2 678 44.5
CsaV3_6G001760 Cucumis sativus L. HOM05D004604 ORTHO05D005744 7.7e-142 508.4 663 46.5
HanXRQChr14g0459841 Helianthus annuus HOM05D004604 ORTHO05D005744 7.7e-142 508.4 636 45.9
Migut.F01374 Erythranthe guttata HOM05D004604 ORTHO05D005744 1.1e-140 504.6 627 46.9
Dinv17981 Davidia involucrata HOM05D004604 ORTHO05D005744 4.2e-140 502.7 528 53.2
Eucgr.J00228 Eucalyptus grandis HOM05D004604 ORTHO05D005744 5.5e-140 502.3 643 47.3
SGA_v2.0_scaffold76G25082 Striga asiatica HOM05D004604 ORTHO05D005744 7.2e-140 501.9 686 44.9
Solyc06g051760.3 Solanum lycopersicum HOM05D004604 ORTHO05D005744 9.4e-140 501.5 677 45.1
Migut.F01373 Erythranthe guttata HOM05D004604 ORTHO05D005744 1.2e-139 501.1 632 47.0
Duzib114G0112 Durio zibethinus HOM05D004604 ORTHO05D005744 2.1e-139 500.4 682 46.3
PSO384G4393 Papaver somniferum HOM05D004604 ORTHO05D005744 6.1e-139 498.8 671 44.9
Cc02_g06650 Coffea canephora HOM05D004604 ORTHO05D005744 1.0e-138 498.0 676 43.6
Nitab4.5_0000802g0040 Nicotiana tabacum HOM05D004604 ORTHO05D005744 1.0e-138 498.0 670 45.2
Lsat_1_v5_gn_2_122780 Lactuca sativa HOM05D004604 ORTHO05D005744 1.4e-138 497.7 690 43.6
Nitab4.5_0005174g0010 Nicotiana tabacum HOM05D004604 ORTHO05D005744 2.3e-138 496.9 645 46.4
PGSC0003DMG400023817 Solanum tuberosum HOM05D004604 ORTHO05D005744 6.7e-138 495.4 678 45.4
EL10Ac2g04814 Beta vulgaris HOM05D004604 ORTHO05D005744 8.8e-138 495.0 668 46.1
MSTRG.213 Avicennia marina HOM05D004604 ORTHO05D005744 1.2e-137 494.6 528 51.9
Potri.008G067000 Populus trichocarpa HOM05D004604 ORTHO05D005744 1.2e-137 494.6 556 49.1
Sabra08G0049200 Salix brachista HOM05D004604 ORTHO05D005744 1.5e-137 494.2 568 49.8
MELO3C008290.2 Cucumis melo HOM05D004604 ORTHO05D005744 9.7e-137 491.5 684 44.4
FAN03G0827 Fragaria x ananassa HOM05D004604 ORTHO05D005744 2.8e-136 490.0 716 45.1
Peaxi162Scf00825g00019 Petunia axillaris HOM05D004604 ORTHO05D005744 4.8e-136 489.2 658 44.7
ATR0618G256 Amborella trichopoda HOM05D004604 ORTHO05D005744 2.4e-135 486.9 561 50.1
Eucgr.J00230 Eucalyptus grandis HOM05D004604 ORTHO05D005744 9.1e-135 485.0 663 45.6
TAR369G0014 Trochodendron aralioides HOM05D004604 ORTHO05D005744 1.6e-134 484.2 545 50.6
Oeu048694.1 Olea europaea HOM05D004604 ORTHO05D005744 3.5e-134 483.0 530 50.8
CAN.G17.11 Capsicum annuum HOM05D004604 ORTHO05D005744 2.9e-133 479.9 674 43.8
PSO339G2357 Papaver somniferum HOM05D004604 ORTHO05D005744 6.5e-133 478.8 705 42.4
MBI05_g34496_MAGBIO Magnolia biondii HOM05D004604 ORTHO05D005744 3.2e-132 476.5 554 50.0
Sed0013753 Sechium edule HOM05D004604 ORTHO05D005744 2.6e-129 466.8 514 49.6
unitig_62.g23928 Utricularia gibba HOM05D004604 ORTHO05D005744 3.4e-129 466.5 681 43.2
Os05g0446800 Oryza sativa ssp. japonica HOM05D004604 ORTHO05D005744 5.7e-129 465.7 678 42.5
Hund15948 Selenicereus undatus HOM05D004604 ORTHO05D005744 1.4e-127 461.1 653 43.5
DCAR_028567 Daucus carota HOM05D004604 ORTHO05D005744 2.4e-127 460.3 640 44.7
GSVIVG01032843001 Vitis vinifera HOM05D004604 ORTHO05D005744 3.1e-127 459.9 643 44.0
arahy.Tifrunner.gnm1.ann1.C37ZT5 Arachis hypogaea HOM05D004604 ORTHO05D005744 4.1e-127 459.5 596 47.3
CDE03G0502 Ceratophyllum demersum HOM05D004604 ORTHO05D005744 4.1e-127 459.5 530 49.6
Cpa.g.sc19.187 Carica papaya HOM05D004604 ORTHO05D005744 9.1e-127 458.4 532 49.6
Zm00001eb348230 Zea mays HOM05D004604 ORTHO05D005744 2.7e-126 456.8 544 46.7
vmacro06977 Vaccinium macrocarpon HOM05D004604 ORTHO05D005744 5.9e-126 455.7 678 43.2
AUR62022867 Chenopodium quinoa HOM05D004604 ORTHO05D005744 5.0e-125 452.6 628 43.9
Cpa.g.sc19.188 Carica papaya HOM05D004604 ORTHO05D005744 1.0e-122 444.9 504 49.8
Eucgr.J00232 Eucalyptus grandis HOM05D004604 ORTHO05D005744 1.8e-119 434.1 615 44.2
SEGI_40640 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 5.0e-117 426.0 504 48.4
Haze_17214 Corylus avellana HOM05D004604 ORTHO05D005744 2.0e-113 414.1 695 39.7
Haze_17213 Corylus avellana HOM05D004604 ORTHO05D005744 1.3e-112 411.4 611 41.6
Gohir.D10G247400 Gossypium hirsutum HOM05D004604 ORTHO05D005744 1.3e-109 401.4 537 46.0
Sc11g0007180 Simmondsia chinensis HOM05D004604 ORTHO05D005744 1.8e-106 391.0 539 43.8
Actinidia29693 Actinidia chinensis HOM05D004604 ORTHO05D005744 8.9e-106 388.7 646 39.0
Peaxi162Scf01208g00144 Petunia axillaris HOM05D004604 ORTHO05D005744 1.2e-105 388.3 555 43.4
Pp3c3_24950 Physcomitrium patens HOM05D004604 ORTHO05D005744 1.5e-105 387.9 612 39.9
Thhalv10013820m.g Eutrema salsugineum HOM05D004604 ORTHO05D005744 1.7e-104 384.4 408 53.9
HanXRQChr06g0172261 Helianthus annuus HOM05D004604 ORTHO05D005744 2.2e-104 384.0 499 45.1
AagrBONN_evm.TU.Sc2ySwM_117.2751 Anthoceros agrestis HOM05D004604 ORTHO05D005744 2.4e-103 380.6 661 37.7
SEGI_28443 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 7.8e-102 375.6 503 44.7
SEGI_33236 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 7.8e-102 375.6 503 44.7
Eucgr.J00227 Eucalyptus grandis HOM05D004604 ORTHO05D005744 6.6e-101 372.5 454 48.9
SMO118G0549 Selaginella moellendorffii HOM05D004604 ORTHO05D005744 7.5e-97 359.0 571 40.1
Mapoly0067s0057 Marchantia polymorpha HOM05D004604 ORTHO05D005744 3.2e-95 353.6 527 41.6
AUR62012235 Chenopodium quinoa HOM05D004604 ORTHO05D005744 4.6e-86 323.2 537 39.3
COL.COLO4_25696 Corchorus olitorius HOM05D004604 ORTHO05D005744 2.5e-76 290.8 642 35.7
PRCOL_00002395 Prasinoderma coloniale HOM05D004604 ORTHO05D005744 1.3e-69 268.5 552 34.6
Actinidia33931 Actinidia chinensis HOM05D004604 ORTHO05D005744 1.5e-68 265.0 682 32.0
CBR_g49483 Chara braunii HOM05D004604 ORTHO05D005744 1.5e-65 255.0 522 34.9
arahy.Tifrunner.gnm1.ann1.3RRJ97 Arachis hypogaea HOM05D004604 ORTHO05D005744 2.2e-48 198.0 332 39.8
HPP92_018034 Vanilla planifolia HOM05D004604 ORTHO05D005744 1.4e-47 195.3 315 40.3
MCO15G553 Micromonas commoda HOM05D004604 ORTHO05D005744 1.2e-46 192.2 168 55.4
Cre13.g580600 Chlamydomonas reinhardtii HOM05D004604 ORTHO05D005744 2.9e-40 171.0 197 44.7
PSO339G5386 Papaver somniferum HOM05D004604 ORTHO05D005744 2.3e-37 161.4 108 67.6
Cfa022588 Carpinus fangiana HOM05D004604 ORTHO05D005744 7.0e-26 123.2 163 39.9
Peaxi162Scf01208g00156 Petunia axillaris HOM05D004604 ORTHO05D005744 4.7e-22 110.5 63 77.8
HPP92_018033 Vanilla planifolia HOM05D004604 ORTHO05D005744 4.1e-10 70.9 128 36.7
CBR_g49485 Chara braunii HOM05D000019 ORTHO05D000048 7.7e-09 66.6 41 68.3
CDE04G1491 Ceratophyllum demersum HOM05D004604 ORTHO05D005744 6.5e-08 63.5 62 48.4
CARHR207570 Cardamine hirsuta HOM05D004604 ORTHO05D116251 4.7e-06 57.4 70 45.7


User provided reference genes

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